Strain Fitness in Variovorax sp. SCN45 around GFF5266

Experiment: Community=arabino-guar; Passage=4

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntGFF5265 and GFF5266 are separated by 247 nucleotidesGFF5266 and GFF5267 are separated by 2 nucleotides GFF5265 - Outer membrane lipoprotein, at 132,931 to 133,599 GFF5265 GFF5266 - Transaldolase (EC 2.2.1.2), at 133,847 to 134,803 GFF5266 GFF5267 - Glucose-6-phosphate isomerase (EC 5.3.1.9), at 134,806 to 136,359 GFF5267 Position (kb) 133 134 135Strain fitness (log2 ratio) -5 -4 -3 -2 -1 0 1 2 3at 132.932 kb on + strandat 132.946 kb on + strandat 132.947 kb on - strandat 132.947 kb on - strandat 132.947 kb on - strandat 132.947 kb on - strandat 132.947 kb on - strandat 132.947 kb on - strandat 132.947 kb on - strandat 132.984 kb on - strandat 133.082 kb on + strand, within GFF5265at 133.082 kb on + strand, within GFF5265at 133.109 kb on + strand, within GFF5265at 133.109 kb on + strand, within GFF5265at 133.109 kb on + strand, within GFF5265at 133.292 kb on + strand, within GFF5265at 133.293 kb on - strand, within GFF5265at 133.293 kb on - strand, within GFF5265at 133.293 kb on - strand, within GFF5265at 133.370 kb on + strand, within GFF5265at 133.370 kb on + strand, within GFF5265at 133.371 kb on - strand, within GFF5265at 133.622 kb on + strandat 133.629 kb on + strandat 133.695 kb on + strandat 133.695 kb on + strandat 133.696 kb on - strandat 133.722 kb on + strandat 133.722 kb on + strandat 133.722 kb on + strandat 133.723 kb on - strandat 133.723 kb on - strandat 133.723 kb on - strandat 133.723 kb on - strandat 133.723 kb on - strandat 133.770 kb on + strandat 133.770 kb on + strandat 133.771 kb on - strandat 133.771 kb on - strandat 133.837 kb on + strandat 134.180 kb on + strand, within GFF5266at 134.180 kb on + strand, within GFF5266at 134.180 kb on + strand, within GFF5266at 134.180 kb on + strand, within GFF5266at 134.180 kb on + strand, within GFF5266at 134.181 kb on - strand, within GFF5266at 134.181 kb on - strand, within GFF5266at 134.181 kb on - strand, within GFF5266at 134.375 kb on + strand, within GFF5266at 134.375 kb on + strand, within GFF5266at 134.376 kb on - strand, within GFF5266at 134.376 kb on - strand, within GFF5266at 134.376 kb on - strand, within GFF5266at 134.385 kb on - strand, within GFF5266at 134.385 kb on - strand, within GFF5266at 134.385 kb on - strand, within GFF5266at 134.385 kb on - strand, within GFF5266at 134.385 kb on - strand, within GFF5266at 134.385 kb on - strand, within GFF5266at 134.468 kb on + strand, within GFF5266at 134.468 kb on + strand, within GFF5266at 134.468 kb on + strand, within GFF5266at 134.468 kb on + strand, within GFF5266at 134.468 kb on + strand, within GFF5266at 134.468 kb on + strand, within GFF5266at 134.468 kb on + strand, within GFF5266at 134.469 kb on - strand, within GFF5266at 134.469 kb on - strand, within GFF5266at 134.469 kb on - strand, within GFF5266at 134.469 kb on - strand, within GFF5266at 134.474 kb on + strand, within GFF5266at 134.474 kb on + strand, within GFF5266at 134.475 kb on - strand, within GFF5266at 134.475 kb on - strand, within GFF5266at 134.475 kb on - strand, within GFF5266at 134.475 kb on - strand, within GFF5266at 134.477 kb on + strand, within GFF5266at 134.477 kb on + strand, within GFF5266at 134.477 kb on + strand, within GFF5266at 134.477 kb on + strand, within GFF5266at 134.477 kb on + strand, within GFF5266at 134.477 kb on + strand, within GFF5266at 134.477 kb on + strand, within GFF5266at 134.477 kb on + strand, within GFF5266at 134.478 kb on - strand, within GFF5266at 134.478 kb on - strand, within GFF5266at 134.478 kb on - strand, within GFF5266at 134.478 kb on - strand, within GFF5266at 134.672 kb on + strand, within GFF5266at 134.672 kb on + strand, within GFF5266at 134.672 kb on + strand, within GFF5266at 134.673 kb on - strand, within GFF5266at 134.801 kb on + strandat 134.801 kb on + strandat 134.801 kb on + strandat 134.801 kb on + strandat 134.801 kb on + strandat 134.801 kb on + strandat 134.802 kb on - strandat 134.802 kb on - strandat 134.802 kb on - strandat 134.802 kb on - strandat 134.950 kb on + strandat 134.950 kb on + strandat 134.950 kb on + strandat 134.950 kb on + strandat 134.950 kb on + strandat 134.950 kb on + strandat 134.950 kb on + strandat 134.950 kb on + strandat 134.951 kb on - strandat 134.951 kb on - strandat 134.951 kb on - strandat 134.951 kb on - strandat 134.951 kb on - strandat 134.951 kb on - strandat 134.951 kb on - strandat 134.951 kb on - strandat 135.196 kb on + strand, within GFF5267at 135.197 kb on - strand, within GFF5267at 135.590 kb on - strand, within GFF5267

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Per-strain Table

Position Strand Gene LocusTag Fraction Community=arabino-guar; Passage=4
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132,932 + -0.1
132,946 + -2.1
132,947 - -1.8
132,947 - -0.2
132,947 - +1.0
132,947 - +2.8
132,947 - -2.4
132,947 - -1.4
132,947 - -0.0
132,984 - -1.6
133,082 + GFF5265 0.23 +1.2
133,082 + GFF5265 0.23 -1.5
133,109 + GFF5265 0.27 -0.5
133,109 + GFF5265 0.27 -1.2
133,109 + GFF5265 0.27 -1.7
133,292 + GFF5265 0.54 +0.2
133,293 - GFF5265 0.54 -1.7
133,293 - GFF5265 0.54 +0.6
133,293 - GFF5265 0.54 -1.1
133,370 + GFF5265 0.66 -2.4
133,370 + GFF5265 0.66 +1.1
133,371 - GFF5265 0.66 -1.6
133,622 + +1.8
133,629 + -0.2
133,695 + +0.6
133,695 + -0.7
133,696 - -0.9
133,722 + +1.4
133,722 + -1.4
133,722 + +1.2
133,723 - -0.2
133,723 - -0.4
133,723 - -1.1
133,723 - -1.2
133,723 - -2.9
133,770 + +1.7
133,770 + -1.4
133,771 - -3.1
133,771 - -0.7
133,837 + -3.6
134,180 + GFF5266 0.35 +1.0
134,180 + GFF5266 0.35 -0.9
134,180 + GFF5266 0.35 -3.5
134,180 + GFF5266 0.35 -1.6
134,180 + GFF5266 0.35 -3.5
134,181 - GFF5266 0.35 -2.9
134,181 - GFF5266 0.35 -0.9
134,181 - GFF5266 0.35 -1.2
134,375 + GFF5266 0.55 -1.6
134,375 + GFF5266 0.55 +0.6
134,376 - GFF5266 0.55 -3.2
134,376 - GFF5266 0.55 -1.1
134,376 - GFF5266 0.55 -1.5
134,385 - GFF5266 0.56 -2.1
134,385 - GFF5266 0.56 -0.2
134,385 - GFF5266 0.56 +0.5
134,385 - GFF5266 0.56 -1.1
134,385 - GFF5266 0.56 -2.2
134,385 - GFF5266 0.56 -2.2
134,468 + GFF5266 0.65 -1.6
134,468 + GFF5266 0.65 -1.8
134,468 + GFF5266 0.65 -3.2
134,468 + GFF5266 0.65 -3.3
134,468 + GFF5266 0.65 -5.0
134,468 + GFF5266 0.65 -0.0
134,468 + GFF5266 0.65 -4.4
134,469 - GFF5266 0.65 -0.2
134,469 - GFF5266 0.65 -2.5
134,469 - GFF5266 0.65 +0.1
134,469 - GFF5266 0.65 -0.7
134,474 + GFF5266 0.66 -1.6
134,474 + GFF5266 0.66 -2.8
134,475 - GFF5266 0.66 -1.6
134,475 - GFF5266 0.66 -2.8
134,475 - GFF5266 0.66 -2.1
134,475 - GFF5266 0.66 -0.8
134,477 + GFF5266 0.66 -2.8
134,477 + GFF5266 0.66 -0.1
134,477 + GFF5266 0.66 -2.6
134,477 + GFF5266 0.66 +0.9
134,477 + GFF5266 0.66 -1.7
134,477 + GFF5266 0.66 -3.7
134,477 + GFF5266 0.66 -1.3
134,477 + GFF5266 0.66 -1.4
134,478 - GFF5266 0.66 -3.4
134,478 - GFF5266 0.66 -0.7
134,478 - GFF5266 0.66 -0.5
134,478 - GFF5266 0.66 -0.2
134,672 + GFF5266 0.86 +1.1
134,672 + GFF5266 0.86 -4.2
134,672 + GFF5266 0.86 -1.5
134,673 - GFF5266 0.86 -2.0
134,801 + +0.5
134,801 + -0.2
134,801 + -0.2
134,801 + +0.8
134,801 + -3.9
134,801 + -0.7
134,802 - -1.1
134,802 - -1.0
134,802 - +1.2
134,802 - -0.2
134,950 + -3.1
134,950 + -1.2
134,950 + +0.5
134,950 + -1.8
134,950 + -1.5
134,950 + +0.5
134,950 + -2.5
134,950 + -1.5
134,951 - +0.5
134,951 - -0.9
134,951 - +2.1
134,951 - -0.7
134,951 - +0.1
134,951 - -0.7
134,951 - +1.1
134,951 - -0.5
135,196 + GFF5267 0.25 -0.2
135,197 - GFF5267 0.25 -0.2
135,590 - GFF5267 0.50 -0.9

Or see this region's nucleotide sequence