Experiment: Community=arabino-guar; Passage=4
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt GFF5238 and GFF5239 are separated by 4 nucleotides GFF5239 and GFF5240 are separated by 35 nucleotides
GFF5238 - General secretion pathway protein L, at 104,202 to 105,269
GFF5238
GFF5239 - hypothetical protein, at 105,274 to 105,504
GFF5239
GFF5240 - General secretion pathway protein K, at 105,540 to 106,511
GFF5240
Position (kb) 105
106 Strain fitness (log2 ratio) -3
-2
-1
0
1
2
3
4
5 at 104.344 kb on + strand, within GFF5238 at 104.345 kb on - strand, within GFF5238 at 104.345 kb on - strand, within GFF5238 at 104.345 kb on - strand, within GFF5238 at 104.650 kb on + strand, within GFF5238 at 104.650 kb on + strand, within GFF5238 at 104.651 kb on - strand, within GFF5238 at 105.440 kb on + strand, within GFF5239 at 105.440 kb on + strand, within GFF5239 at 105.441 kb on - strand, within GFF5239 at 105.441 kb on - strand, within GFF5239 at 105.454 kb on - strand, within GFF5239 at 105.454 kb on - strand, within GFF5239 at 105.618 kb on + strand at 105.618 kb on + strand at 105.619 kb on - strand at 105.667 kb on + strand, within GFF5240 at 105.668 kb on - strand, within GFF5240 at 105.668 kb on - strand, within GFF5240 at 105.668 kb on - strand, within GFF5240 at 105.668 kb on - strand, within GFF5240 at 105.895 kb on + strand, within GFF5240 at 105.895 kb on + strand, within GFF5240 at 105.895 kb on + strand, within GFF5240 at 105.895 kb on + strand, within GFF5240 at 105.895 kb on + strand, within GFF5240 at 105.896 kb on - strand, within GFF5240 at 105.896 kb on - strand, within GFF5240
Per-strain Table
Position Strand Gene LocusTag Fraction Community=arabino-guar; Passage=4 remove 104,344 + GFF5238 0.13 +4.8 104,345 - GFF5238 0.13 -1.8 104,345 - GFF5238 0.13 +0.0 104,345 - GFF5238 0.13 +1.1 104,650 + GFF5238 0.42 -1.1 104,650 + GFF5238 0.42 +2.1 104,651 - GFF5238 0.42 +1.8 105,440 + GFF5239 0.72 -1.4 105,440 + GFF5239 0.72 -0.2 105,441 - GFF5239 0.72 -3.0 105,441 - GFF5239 0.72 -0.2 105,454 - GFF5239 0.78 +0.2 105,454 - GFF5239 0.78 -0.2 105,618 + +0.7 105,618 + +3.1 105,619 - +1.8 105,667 + GFF5240 0.13 -1.4 105,668 - GFF5240 0.13 +0.5 105,668 - GFF5240 0.13 -0.4 105,668 - GFF5240 0.13 -1.2 105,668 - GFF5240 0.13 -2.1 105,895 + GFF5240 0.37 +1.1 105,895 + GFF5240 0.37 +2.0 105,895 + GFF5240 0.37 -1.4 105,895 + GFF5240 0.37 -0.7 105,895 + GFF5240 0.37 +1.8 105,896 - GFF5240 0.37 -1.4 105,896 - GFF5240 0.37 -0.6
Or see this region's nucleotide sequence