Experiment: Community=arabino-guar; Passage=4
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt GFF5199 and GFF5200 are separated by 8 nucleotides GFF5200 and GFF5201 are separated by 9 nucleotides GFF5201 and GFF5202 are separated by 52 nucleotides
GFF5199 - Galactofuranose ABC transporter, permease protein 2, at 59,221 to 60,258
GFF5199
GFF5200 - L-arabonate dehydratase (EC 4.2.1.25), at 60,267 to 62,003
GFF5200
GFF5201 - L-2-keto-3-deoxyarabonate dehydratase (EC 4.2.1.43), at 62,013 to 62,930
GFF5201
GFF5202 - hypothetical protein, at 62,983 to 63,261
GFF5202
Position (kb) 60
61
62
63 Strain fitness (log2 ratio) -3
-2
-1
0
1
2
3 at 59.314 kb on + strand at 59.695 kb on + strand, within GFF5199 at 59.696 kb on - strand, within GFF5199 at 59.870 kb on - strand, within GFF5199 at 59.992 kb on + strand, within GFF5199 at 59.992 kb on + strand, within GFF5199 at 59.992 kb on + strand, within GFF5199 at 59.992 kb on + strand, within GFF5199 at 59.993 kb on - strand, within GFF5199 at 60.091 kb on + strand, within GFF5199 at 60.091 kb on + strand, within GFF5199 at 60.262 kb on + strand at 60.327 kb on + strand at 60.676 kb on + strand, within GFF5200 at 60.948 kb on + strand, within GFF5200 at 60.948 kb on + strand, within GFF5200 at 61.218 kb on + strand, within GFF5200 at 61.219 kb on - strand, within GFF5200 at 61.512 kb on + strand, within GFF5200 at 61.512 kb on + strand, within GFF5200 at 61.512 kb on + strand, within GFF5200 at 61.512 kb on + strand, within GFF5200 at 61.593 kb on + strand, within GFF5200 at 61.701 kb on + strand, within GFF5200 at 61.706 kb on + strand, within GFF5200 at 61.706 kb on + strand, within GFF5200 at 61.911 kb on + strand at 61.911 kb on + strand at 61.911 kb on + strand at 62.026 kb on - strand at 62.223 kb on + strand, within GFF5201 at 62.260 kb on - strand, within GFF5201 at 62.385 kb on + strand, within GFF5201 at 62.385 kb on + strand, within GFF5201 at 62.385 kb on + strand, within GFF5201 at 62.385 kb on + strand, within GFF5201 at 62.386 kb on - strand, within GFF5201 at 62.386 kb on - strand, within GFF5201 at 62.506 kb on - strand, within GFF5201 at 62.506 kb on - strand, within GFF5201 at 62.515 kb on + strand, within GFF5201 at 62.516 kb on - strand, within GFF5201 at 62.731 kb on - strand, within GFF5201 at 62.731 kb on - strand, within GFF5201 at 62.757 kb on + strand, within GFF5201 at 62.758 kb on - strand, within GFF5201
Per-strain Table
Position Strand Gene LocusTag Fraction Community=arabino-guar; Passage=4 remove 59,314 + -2.1 59,695 + GFF5199 0.46 +0.9 59,696 - GFF5199 0.46 -2.3 59,870 - GFF5199 0.63 -2.8 59,992 + GFF5199 0.74 +0.3 59,992 + GFF5199 0.74 -0.2 59,992 + GFF5199 0.74 -1.6 59,992 + GFF5199 0.74 +2.8 59,993 - GFF5199 0.74 +1.1 60,091 + GFF5199 0.84 +3.3 60,091 + GFF5199 0.84 +0.4 60,262 + +1.1 60,327 + +1.9 60,676 + GFF5200 0.24 -3.4 60,948 + GFF5200 0.39 -1.4 60,948 + GFF5200 0.39 +1.0 61,218 + GFF5200 0.55 -0.5 61,219 - GFF5200 0.55 -0.4 61,512 + GFF5200 0.72 +0.3 61,512 + GFF5200 0.72 -1.7 61,512 + GFF5200 0.72 +2.7 61,512 + GFF5200 0.72 -0.1 61,593 + GFF5200 0.76 -1.5 61,701 + GFF5200 0.83 -0.5 61,706 + GFF5200 0.83 -0.6 61,706 + GFF5200 0.83 -1.9 61,911 + +0.4 61,911 + -2.8 61,911 + -0.0 62,026 - -1.1 62,223 + GFF5201 0.23 -1.4 62,260 - GFF5201 0.27 -1.9 62,385 + GFF5201 0.41 -0.9 62,385 + GFF5201 0.41 +0.4 62,385 + GFF5201 0.41 +1.3 62,385 + GFF5201 0.41 -0.9 62,386 - GFF5201 0.41 -0.7 62,386 - GFF5201 0.41 -2.8 62,506 - GFF5201 0.54 -2.5 62,506 - GFF5201 0.54 -0.5 62,515 + GFF5201 0.55 +1.0 62,516 - GFF5201 0.55 -0.0 62,731 - GFF5201 0.78 -1.4 62,731 - GFF5201 0.78 -1.1 62,757 + GFF5201 0.81 -1.1 62,758 - GFF5201 0.81 +0.2
Or see this region's nucleotide sequence