Experiment: Community=arabino-guar; Passage=4
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt GFF5197 and GFF5198 are separated by 139 nucleotides GFF5198 and GFF5199 overlap by 4 nucleotides
GFF5197 - Galactofuranose ABC transporter, ATP-binding protein, at 56,536 to 58,050
GFF5197
GFF5198 - ABC transporter, permease protein (cluster 2, ribose/xylose/arabinose/galactose), at 58,190 to 59,224
GFF5198
GFF5199 - Galactofuranose ABC transporter, permease protein 2, at 59,221 to 60,258
GFF5199
Position (kb) 58
59
60 Strain fitness (log2 ratio) -3
-2
-1
0
1
2
3 at 57.191 kb on + strand, within GFF5197 at 58.027 kb on + strand at 58.028 kb on - strand at 58.028 kb on - strand at 58.028 kb on - strand at 58.189 kb on + strand at 58.189 kb on + strand at 58.189 kb on + strand at 58.189 kb on + strand at 58.190 kb on - strand at 58.190 kb on - strand at 58.190 kb on - strand at 58.431 kb on + strand, within GFF5198 at 58.670 kb on + strand, within GFF5198 at 58.671 kb on - strand, within GFF5198 at 58.674 kb on - strand, within GFF5198 at 58.674 kb on - strand, within GFF5198 at 58.674 kb on - strand, within GFF5198 at 58.871 kb on + strand, within GFF5198 at 58.872 kb on - strand, within GFF5198 at 59.073 kb on - strand, within GFF5198 at 59.073 kb on - strand, within GFF5198 at 59.073 kb on - strand, within GFF5198 at 59.178 kb on + strand at 59.179 kb on - strand at 59.179 kb on - strand at 59.314 kb on + strand at 59.695 kb on + strand, within GFF5199 at 59.696 kb on - strand, within GFF5199 at 59.870 kb on - strand, within GFF5199 at 59.992 kb on + strand, within GFF5199 at 59.992 kb on + strand, within GFF5199 at 59.992 kb on + strand, within GFF5199 at 59.992 kb on + strand, within GFF5199 at 59.993 kb on - strand, within GFF5199 at 60.091 kb on + strand, within GFF5199 at 60.091 kb on + strand, within GFF5199
Per-strain Table
Position Strand Gene LocusTag Fraction Community=arabino-guar; Passage=4 remove 57,191 + GFF5197 0.43 -2.5 58,027 + +0.3 58,028 - +1.0 58,028 - +0.2 58,028 - -0.6 58,189 + -2.5 58,189 + +2.1 58,189 + -2.7 58,189 + +1.5 58,190 - -1.2 58,190 - -0.9 58,190 - -0.7 58,431 + GFF5198 0.23 +0.1 58,670 + GFF5198 0.46 +1.6 58,671 - GFF5198 0.46 +1.1 58,674 - GFF5198 0.47 -2.6 58,674 - GFF5198 0.47 +1.1 58,674 - GFF5198 0.47 -2.2 58,871 + GFF5198 0.66 -3.7 58,872 - GFF5198 0.66 -0.5 59,073 - GFF5198 0.85 +0.8 59,073 - GFF5198 0.85 -0.7 59,073 - GFF5198 0.85 +0.2 59,178 + +0.5 59,179 - -0.7 59,179 - -0.5 59,314 + -2.1 59,695 + GFF5199 0.46 +0.9 59,696 - GFF5199 0.46 -2.3 59,870 - GFF5199 0.63 -2.8 59,992 + GFF5199 0.74 +0.3 59,992 + GFF5199 0.74 -0.2 59,992 + GFF5199 0.74 -1.6 59,992 + GFF5199 0.74 +2.8 59,993 - GFF5199 0.74 +1.1 60,091 + GFF5199 0.84 +3.3 60,091 + GFF5199 0.84 +0.4
Or see this region's nucleotide sequence