Experiment: Community=arabino-guar; Passage=4
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt GFF5194 and GFF5195 overlap by 4 nucleotides GFF5195 and GFF5196 overlap by 14 nucleotides
GFF5194 - L-arabinose ABC transporter, substrate-binding protein AraF, at 52,683 to 53,753
GFF5194
GFF5195 - L-arabinose ABC transporter, ATP-binding protein AraG, at 53,750 to 55,321
GFF5195
GFF5196 - L-arabinose ABC transporter, permease protein AraH, at 55,308 to 56,522
GFF5196
Position (kb) 53
54
55
56 Strain fitness (log2 ratio) -5
-4
-3
-2
-1
0
1
2
3 at 52.842 kb on + strand, within GFF5194 at 52.861 kb on - strand, within GFF5194 at 52.861 kb on - strand, within GFF5194 at 53.064 kb on + strand, within GFF5194 at 53.064 kb on + strand, within GFF5194 at 53.208 kb on + strand, within GFF5194 at 53.238 kb on + strand, within GFF5194 at 53.358 kb on + strand, within GFF5194 at 53.358 kb on + strand, within GFF5194 at 53.358 kb on + strand, within GFF5194 at 53.359 kb on - strand, within GFF5194 at 53.359 kb on - strand, within GFF5194 at 53.634 kb on + strand, within GFF5194 at 53.634 kb on + strand, within GFF5194 at 53.635 kb on - strand, within GFF5194 at 53.665 kb on - strand at 53.730 kb on + strand at 53.730 kb on + strand at 53.730 kb on + strand at 53.730 kb on + strand at 53.951 kb on + strand, within GFF5195 at 53.952 kb on - strand, within GFF5195 at 53.952 kb on - strand, within GFF5195 at 54.134 kb on + strand, within GFF5195 at 54.134 kb on + strand, within GFF5195 at 55.106 kb on + strand, within GFF5195 at 55.107 kb on - strand, within GFF5195 at 55.115 kb on + strand, within GFF5195 at 55.116 kb on - strand, within GFF5195 at 55.209 kb on - strand at 55.209 kb on - strand at 55.515 kb on + strand, within GFF5196 at 55.515 kb on + strand, within GFF5196 at 55.515 kb on + strand, within GFF5196 at 55.516 kb on - strand, within GFF5196 at 55.633 kb on - strand, within GFF5196 at 55.983 kb on + strand, within GFF5196 at 56.041 kb on - strand, within GFF5196 at 56.055 kb on + strand, within GFF5196 at 56.148 kb on + strand, within GFF5196
Per-strain Table
Position Strand Gene LocusTag Fraction Community=arabino-guar; Passage=4 remove 52,842 + GFF5194 0.15 -1.3 52,861 - GFF5194 0.17 +1.1 52,861 - GFF5194 0.17 -2.2 53,064 + GFF5194 0.36 +0.1 53,064 + GFF5194 0.36 -2.5 53,208 + GFF5194 0.49 +1.3 53,238 + GFF5194 0.52 -2.0 53,358 + GFF5194 0.63 +1.1 53,358 + GFF5194 0.63 -0.0 53,358 + GFF5194 0.63 -4.9 53,359 - GFF5194 0.63 +0.5 53,359 - GFF5194 0.63 +0.5 53,634 + GFF5194 0.89 -1.6 53,634 + GFF5194 0.89 -2.1 53,635 - GFF5194 0.89 +0.4 53,665 - +1.1 53,730 + +0.7 53,730 + -0.7 53,730 + -0.2 53,730 + +1.4 53,951 + GFF5195 0.13 -2.1 53,952 - GFF5195 0.13 -3.6 53,952 - GFF5195 0.13 +0.9 54,134 + GFF5195 0.24 -0.9 54,134 + GFF5195 0.24 +0.5 55,106 + GFF5195 0.86 -1.8 55,107 - GFF5195 0.86 -0.1 55,115 + GFF5195 0.87 +0.0 55,116 - GFF5195 0.87 +2.9 55,209 - +0.8 55,209 - -1.6 55,515 + GFF5196 0.17 -2.1 55,515 + GFF5196 0.17 -0.2 55,515 + GFF5196 0.17 +0.4 55,516 - GFF5196 0.17 -0.9 55,633 - GFF5196 0.27 -1.2 55,983 + GFF5196 0.56 -2.9 56,041 - GFF5196 0.60 +0.9 56,055 + GFF5196 0.61 +2.0 56,148 + GFF5196 0.69 -1.8
Or see this region's nucleotide sequence