Strain Fitness in Variovorax sp. SCN45 around GFF5192

Experiment: Community=arabino-guar; Passage=4

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Community=arabino-guar; Passage=4
49,265	+		GFF5191	0.18	-1.9
49,265	+		GFF5191	0.18	+0.3
49,265	+		GFF5191	0.18	+0.2
49,265	+		GFF5191	0.18	-1.5
49,265	+		GFF5191	0.18	+0.8
49,266	-		GFF5191	0.18	-0.2
49,266	-		GFF5191	0.18	+2.0
49,269	-		GFF5191	0.18	-2.4
49,269	-		GFF5191	0.18	+2.2
49,541	+		GFF5191	0.47	-1.2
49,640	-		GFF5191	0.57	+1.9
50,033	-				-1.1
50,042	+				-0.5
50,042	+				+1.5
50,042	+				-3.4
50,043	-				-0.4
50,043	-				+0.6
50,043	-				+1.6
50,059	+				-0.2
50,059	+				+0.5
50,149	+				-2.4
50,233	+				+0.6
50,233	+				-1.2
50,234	-				+0.5
50,234	-				-0.1
50,234	-				-0.5
50,417	+		GFF5192	0.15	+2.1
50,417	+		GFF5192	0.15	-0.3
50,417	+		GFF5192	0.15	+1.7
50,417	+		GFF5192	0.15	-1.5
50,418	-		GFF5192	0.15	-0.4
51,073	-		GFF5192	0.60	+0.0
51,310	+		GFF5192	0.76	-0.7
51,310	+		GFF5192	0.76	+2.1
51,310	+		GFF5192	0.76	-0.3
51,311	-		GFF5192	0.76	+1.6
51,311	-		GFF5192	0.76	+0.2
51,407	-		GFF5192	0.82	-2.5
51,590	-				+1.2
51,677	-				+0.2
51,677	-				-1.8
51,948	+		GFF5193	0.25	-3.2
51,948	+		GFF5193	0.25	+0.5
52,090	-		GFF5193	0.40	+0.9
52,090	-		GFF5193	0.40	+0.1