Experiment: Community=arabino-guar; Passage=4
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt GFF5190 and GFF5191 are separated by 114 nucleotides GFF5191 and GFF5192 are separated by 144 nucleotides
GFF5190 - L-arabinose 1-dehydrogenase (EC 1.1.1.376), at 48,205 to 48,978
GFF5190
GFF5191 - Galactose-binding protein regulator, at 49,093 to 50,052
GFF5191
GFF5192 - 2-ketoglutaric semialdehyde dehydrogenase (EC 1.2.1.26), at 50,197 to 51,663
GFF5192
Position (kb) 49
50
51 Strain fitness (log2 ratio) -3
-2
-1
0
1
2
3
4 at 48.112 kb on + strand at 48.112 kb on + strand at 48.112 kb on + strand at 48.112 kb on + strand at 48.113 kb on - strand at 48.113 kb on - strand at 48.113 kb on - strand at 48.113 kb on - strand at 48.128 kb on + strand at 48.547 kb on + strand, within GFF5190 at 48.547 kb on + strand, within GFF5190 at 48.550 kb on + strand, within GFF5190 at 48.550 kb on + strand, within GFF5190 at 48.550 kb on + strand, within GFF5190 at 48.550 kb on + strand, within GFF5190 at 48.550 kb on + strand, within GFF5190 at 48.551 kb on - strand, within GFF5190 at 48.551 kb on - strand, within GFF5190 at 48.551 kb on - strand, within GFF5190 at 48.551 kb on - strand, within GFF5190 at 48.551 kb on - strand, within GFF5190 at 48.686 kb on - strand, within GFF5190 at 48.694 kb on + strand, within GFF5190 at 48.695 kb on - strand, within GFF5190 at 48.695 kb on - strand, within GFF5190 at 48.976 kb on + strand at 48.976 kb on + strand at 48.976 kb on + strand at 48.976 kb on + strand at 48.976 kb on + strand at 48.976 kb on + strand at 48.977 kb on - strand at 48.977 kb on - strand at 48.977 kb on - strand at 48.977 kb on - strand at 48.977 kb on - strand at 48.985 kb on - strand at 48.985 kb on - strand at 48.985 kb on - strand at 49.118 kb on + strand at 49.119 kb on - strand at 49.119 kb on - strand at 49.265 kb on + strand, within GFF5191 at 49.265 kb on + strand, within GFF5191 at 49.265 kb on + strand, within GFF5191 at 49.265 kb on + strand, within GFF5191 at 49.265 kb on + strand, within GFF5191 at 49.266 kb on - strand, within GFF5191 at 49.266 kb on - strand, within GFF5191 at 49.269 kb on - strand, within GFF5191 at 49.269 kb on - strand, within GFF5191 at 49.541 kb on + strand, within GFF5191 at 49.640 kb on - strand, within GFF5191 at 50.033 kb on - strand at 50.042 kb on + strand at 50.042 kb on + strand at 50.042 kb on + strand at 50.043 kb on - strand at 50.043 kb on - strand at 50.043 kb on - strand at 50.059 kb on + strand at 50.059 kb on + strand at 50.149 kb on + strand at 50.233 kb on + strand at 50.233 kb on + strand at 50.234 kb on - strand at 50.234 kb on - strand at 50.234 kb on - strand at 50.417 kb on + strand, within GFF5192 at 50.417 kb on + strand, within GFF5192 at 50.417 kb on + strand, within GFF5192 at 50.417 kb on + strand, within GFF5192 at 50.418 kb on - strand, within GFF5192
Per-strain Table
Position Strand Gene LocusTag Fraction Community=arabino-guar; Passage=4 remove 48,112 + -2.2 48,112 + -0.2 48,112 + -3.3 48,112 + -0.4 48,113 - -1.1 48,113 - +0.2 48,113 - +0.3 48,113 - +0.6 48,128 + -3.2 48,547 + GFF5190 0.44 -0.4 48,547 + GFF5190 0.44 -0.5 48,550 + GFF5190 0.45 -0.1 48,550 + GFF5190 0.45 +2.1 48,550 + GFF5190 0.45 -2.1 48,550 + GFF5190 0.45 +4.1 48,550 + GFF5190 0.45 -0.2 48,551 - GFF5190 0.45 +1.9 48,551 - GFF5190 0.45 -3.3 48,551 - GFF5190 0.45 +0.3 48,551 - GFF5190 0.45 +1.6 48,551 - GFF5190 0.45 -1.8 48,686 - GFF5190 0.62 -0.9 48,694 + GFF5190 0.63 -0.2 48,695 - GFF5190 0.63 +0.8 48,695 - GFF5190 0.63 +2.1 48,976 + +2.1 48,976 + -2.1 48,976 + -0.9 48,976 + +2.1 48,976 + +0.4 48,976 + +1.2 48,977 - +1.1 48,977 - -0.7 48,977 - -1.6 48,977 - +1.1 48,977 - -2.0 48,985 - -1.9 48,985 - +2.4 48,985 - -1.8 49,118 + -2.2 49,119 - -1.2 49,119 - -0.0 49,265 + GFF5191 0.18 -1.9 49,265 + GFF5191 0.18 +0.3 49,265 + GFF5191 0.18 +0.2 49,265 + GFF5191 0.18 -1.5 49,265 + GFF5191 0.18 +0.8 49,266 - GFF5191 0.18 -0.2 49,266 - GFF5191 0.18 +2.0 49,269 - GFF5191 0.18 -2.4 49,269 - GFF5191 0.18 +2.2 49,541 + GFF5191 0.47 -1.2 49,640 - GFF5191 0.57 +1.9 50,033 - -1.1 50,042 + -0.5 50,042 + +1.5 50,042 + -3.4 50,043 - -0.4 50,043 - +0.6 50,043 - +1.6 50,059 + -0.2 50,059 + +0.5 50,149 + -2.4 50,233 + +0.6 50,233 + -1.2 50,234 - +0.5 50,234 - -0.1 50,234 - -0.5 50,417 + GFF5192 0.15 +2.1 50,417 + GFF5192 0.15 -0.3 50,417 + GFF5192 0.15 +1.7 50,417 + GFF5192 0.15 -1.5 50,418 - GFF5192 0.15 -0.4
Or see this region's nucleotide sequence