Strain Fitness in Variovorax sp. SCN45 around GFF5158

Experiment: Community=arabino-guar; Passage=4

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Community=arabino-guar; Passage=4
10,479	+		GFF5157	0.46	-4.1
10,479	+		GFF5157	0.46	-1.9
10,479	+		GFF5157	0.46	-0.7
10,480	-		GFF5157	0.46	-0.7
10,480	-		GFF5157	0.46	-3.2
10,480	-		GFF5157	0.46	+0.2
10,480	-		GFF5157	0.46	+1.1
10,480	-		GFF5157	0.46	+2.1
10,539	+		GFF5157	0.49	+2.4
10,540	-		GFF5157	0.50	-1.1
10,540	-		GFF5157	0.50	-1.1
10,540	-		GFF5157	0.50	-2.9
10,540	-		GFF5157	0.50	-1.2
10,540	-		GFF5157	0.50	-2.2
10,540	-		GFF5157	0.50	-3.9
10,540	-		GFF5157	0.50	-1.2
10,614	+		GFF5157	0.54	+2.8
10,615	-		GFF5157	0.54	-0.5
10,620	+		GFF5157	0.54	-1.2
10,620	+		GFF5157	0.54	-2.5
10,620	+		GFF5157	0.54	-1.8
10,621	-		GFF5157	0.54	-3.9
10,621	-		GFF5157	0.54	+0.9
10,621	-		GFF5157	0.54	+0.4
10,698	+		GFF5157	0.58	+0.8
10,699	-		GFF5157	0.58	+1.7
10,699	-		GFF5157	0.58	+0.1
10,746	+		GFF5157	0.61	+0.4
10,747	-		GFF5157	0.61	-4.0
10,747	-		GFF5157	0.61	-2.2
10,747	-		GFF5157	0.61	-1.3
10,789	-		GFF5157	0.63	-2.5
10,872	+		GFF5157	0.67	+1.7
10,872	+		GFF5157	0.67	-2.8
10,872	+		GFF5157	0.67	-0.5
10,872	+		GFF5157	0.67	-1.7
10,872	+		GFF5157	0.67	-0.7
10,873	-		GFF5157	0.67	+1.2
10,873	-		GFF5157	0.67	+0.7
10,873	-		GFF5157	0.67	-3.9
10,873	-		GFF5157	0.67	-0.2
10,873	-		GFF5157	0.67	-1.4
10,873	-		GFF5157	0.67	-4.5
10,873	-		GFF5157	0.67	-1.5
10,962	+		GFF5157	0.72	+0.6
10,962	+		GFF5157	0.72	-2.8
10,963	-		GFF5157	0.72	-0.9
10,963	-		GFF5157	0.72	-4.6
10,963	-		GFF5157	0.72	+0.5
10,963	-		GFF5157	0.72	-3.2
11,115	+		GFF5157	0.80	+2.1
11,115	+		GFF5157	0.80	-0.4
11,115	+		GFF5157	0.80	-1.4
11,116	-		GFF5157	0.80	+2.1
11,116	-		GFF5157	0.80	-3.9
11,116	-		GFF5157	0.80	-1.1
11,202	+		GFF5157	0.85	-0.5
11,202	+		GFF5157	0.85	-1.6
11,202	+		GFF5157	0.85	-5.1
11,202	+		GFF5157	0.85	-0.2
11,202	+		GFF5157	0.85	-1.6
11,202	+		GFF5157	0.85	+0.5
11,202	+		GFF5157	0.85	-3.2
11,202	+		GFF5157	0.85	-2.3
11,203	-		GFF5157	0.85	-2.1
11,203	-		GFF5157	0.85	-2.8
11,203	-		GFF5157	0.85	-3.1
11,203	-		GFF5157	0.85	-2.2
11,203	-		GFF5157	0.85	-0.5
11,355	+				-0.5
11,355	+				+0.8
11,355	+				-1.8
11,355	+				-2.8
11,355	+				-1.4
11,356	-				-1.1
11,356	-				+1.6
11,567	+		GFF5158	0.11	+1.1
11,567	+		GFF5158	0.11	-3.4
11,567	+		GFF5158	0.11	+0.5
11,568	-		GFF5158	0.11	-5.6
11,568	-		GFF5158	0.11	-3.6
12,201	+		GFF5158	0.88	-1.7
12,201	+		GFF5158	0.88	-2.8
12,202	-		GFF5158	0.88	-2.9
12,202	-		GFF5158	0.88	-4.4
12,202	-		GFF5158	0.88	-5.5
12,202	-		GFF5158	0.88	-0.9
12,292	+				+1.1
12,292	+				+0.3
12,292	+				-2.2
12,292	+				+1.2
12,292	+				-1.1
12,292	+				+1.5
12,293	-				-0.5