Experiment: Community=arabino-guar; Passage=4
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt GFF5111 and GFF5112 are separated by 9 nucleotides GFF5112 and GFF5113 are separated by 15 nucleotides GFF5113 and GFF5114 are separated by 89 nucleotides
GFF5111 - Permease of the drug/metabolite transporter (DMT) superfamily, at 212,928 to 213,818
GFF5111
GFF5112 - Glutathione peroxidase (EC 1.11.1.9) @ Thioredoxin peroxidase (EC 1.11.1.15), at 213,828 to 214,316
GFF5112
GFF5113 - hypothetical protein, at 214,332 to 214,775
GFF5113
GFF5114 - Glycolate dehydrogenase (EC 1.1.99.14), iron-sulfur subunit GlcF, at 214,865 to 216,097
GFF5114
Position (kb) 214
215 Strain fitness (log2 ratio) -3
-2
-1
0
1
2
3
4
5 at 213.609 kb on + strand, within GFF5111 at 213.610 kb on - strand, within GFF5111 at 213.840 kb on + strand at 213.840 kb on + strand at 213.841 kb on - strand at 213.981 kb on + strand, within GFF5112 at 213.981 kb on + strand, within GFF5112 at 213.981 kb on + strand, within GFF5112 at 213.999 kb on - strand, within GFF5112 at 213.999 kb on - strand, within GFF5112 at 214.083 kb on + strand, within GFF5112 at 214.083 kb on + strand, within GFF5112 at 214.084 kb on - strand, within GFF5112 at 214.084 kb on - strand, within GFF5112 at 214.084 kb on - strand, within GFF5112 at 214.084 kb on - strand, within GFF5112 at 214.146 kb on + strand, within GFF5112 at 214.251 kb on + strand, within GFF5112 at 214.252 kb on - strand, within GFF5112 at 214.333 kb on + strand at 214.333 kb on + strand at 214.333 kb on + strand at 214.333 kb on + strand at 214.333 kb on + strand at 214.334 kb on - strand at 214.334 kb on - strand at 214.334 kb on - strand at 214.334 kb on - strand at 214.334 kb on - strand at 214.334 kb on - strand at 214.334 kb on - strand at 214.334 kb on - strand at 214.424 kb on - strand, within GFF5113 at 214.424 kb on - strand, within GFF5113 at 214.424 kb on - strand, within GFF5113 at 214.534 kb on + strand, within GFF5113 at 214.534 kb on + strand, within GFF5113 at 214.534 kb on + strand, within GFF5113 at 214.534 kb on + strand, within GFF5113 at 214.534 kb on + strand, within GFF5113 at 214.535 kb on - strand, within GFF5113 at 214.535 kb on - strand, within GFF5113 at 214.633 kb on + strand, within GFF5113 at 214.634 kb on - strand, within GFF5113 at 214.722 kb on + strand, within GFF5113 at 214.722 kb on + strand, within GFF5113 at 214.723 kb on - strand, within GFF5113 at 214.723 kb on - strand, within GFF5113 at 215.025 kb on + strand, within GFF5114 at 215.052 kb on + strand, within GFF5114 at 215.052 kb on + strand, within GFF5114 at 215.052 kb on + strand, within GFF5114 at 215.052 kb on + strand, within GFF5114 at 215.053 kb on - strand, within GFF5114 at 215.053 kb on - strand, within GFF5114 at 215.053 kb on - strand, within GFF5114 at 215.053 kb on - strand, within GFF5114 at 215.298 kb on + strand, within GFF5114 at 215.299 kb on - strand, within GFF5114 at 215.299 kb on - strand, within GFF5114 at 215.299 kb on - strand, within GFF5114 at 215.299 kb on - strand, within GFF5114 at 215.383 kb on - strand, within GFF5114 at 215.397 kb on + strand, within GFF5114 at 215.397 kb on + strand, within GFF5114 at 215.397 kb on + strand, within GFF5114 at 215.398 kb on - strand, within GFF5114
Per-strain Table
Position Strand Gene LocusTag Fraction Community=arabino-guar; Passage=4 remove 213,609 + GFF5111 0.76 +4.9 213,610 - GFF5111 0.77 +0.1 213,840 + -0.5 213,840 + -0.1 213,841 - +0.0 213,981 + GFF5112 0.31 +0.0 213,981 + GFF5112 0.31 -1.1 213,981 + GFF5112 0.31 +2.1 213,999 - GFF5112 0.35 -2.0 213,999 - GFF5112 0.35 -2.0 214,083 + GFF5112 0.52 -0.7 214,083 + GFF5112 0.52 -0.4 214,084 - GFF5112 0.52 +2.2 214,084 - GFF5112 0.52 -0.7 214,084 - GFF5112 0.52 +2.7 214,084 - GFF5112 0.52 -0.9 214,146 + GFF5112 0.65 +3.5 214,251 + GFF5112 0.87 -0.4 214,252 - GFF5112 0.87 +0.4 214,333 + -0.4 214,333 + -2.0 214,333 + -1.5 214,333 + +1.5 214,333 + -3.7 214,334 - -1.8 214,334 - +1.3 214,334 - -2.5 214,334 - +1.7 214,334 - -0.9 214,334 - -2.6 214,334 - -0.6 214,334 - -1.6 214,424 - GFF5113 0.21 +0.7 214,424 - GFF5113 0.21 +0.6 214,424 - GFF5113 0.21 -1.5 214,534 + GFF5113 0.45 -0.5 214,534 + GFF5113 0.45 +1.0 214,534 + GFF5113 0.45 +0.2 214,534 + GFF5113 0.45 +0.6 214,534 + GFF5113 0.45 +1.1 214,535 - GFF5113 0.46 -2.0 214,535 - GFF5113 0.46 -2.0 214,633 + GFF5113 0.68 -1.1 214,634 - GFF5113 0.68 +1.2 214,722 + GFF5113 0.88 -2.4 214,722 + GFF5113 0.88 -0.8 214,723 - GFF5113 0.88 +0.3 214,723 - GFF5113 0.88 +0.9 215,025 + GFF5114 0.13 +1.5 215,052 + GFF5114 0.15 +3.4 215,052 + GFF5114 0.15 -1.5 215,052 + GFF5114 0.15 -0.1 215,052 + GFF5114 0.15 -0.5 215,053 - GFF5114 0.15 -0.6 215,053 - GFF5114 0.15 -2.8 215,053 - GFF5114 0.15 -2.7 215,053 - GFF5114 0.15 -2.8 215,298 + GFF5114 0.35 +1.2 215,299 - GFF5114 0.35 +1.9 215,299 - GFF5114 0.35 -2.0 215,299 - GFF5114 0.35 -1.4 215,299 - GFF5114 0.35 -0.3 215,383 - GFF5114 0.42 -1.9 215,397 + GFF5114 0.43 -0.6 215,397 + GFF5114 0.43 +0.3 215,397 + GFF5114 0.43 +2.2 215,398 - GFF5114 0.43 -3.3
Or see this region's nucleotide sequence