Experiment: Community=arabino-guar; Passage=4
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt GFF5091 and GFF5092 overlap by 4 nucleotides GFF5092 and GFF5093 overlap by 4 nucleotides GFF5093 and GFF5094 are separated by 2 nucleotides GFF5094 and GFF5095 are separated by 3 nucleotides
GFF5091 - 5-carboxymethyl-2-oxo-hex-3- ene-1,7-dioate decarboxylase (EC 4.1.1.68), at 194,172 to 194,804
GFF5091
GFF5092 - 2-hydroxyhepta-2,4-diene-1,7-dioate isomerase (EC 5.3.3.-), at 194,801 to 195,583
GFF5092
GFF5093 - 5-carboxymethyl-2-hydroxymuconate semialdehyde dehydrogenase (EC 1.2.1.60), at 195,580 to 197,043
GFF5093
GFF5094 - BUG/TctC family periplasmic protein, at 197,046 to 198,014
GFF5094
GFF5095 - hypothetical protein, at 198,018 to 198,353
GFF5095
Position (kb) 195
196
197
198 Strain fitness (log2 ratio) -4
-3
-2
-1
0
1
2
3
4 at 194.822 kb on + strand at 194.822 kb on + strand at 194.822 kb on + strand at 194.823 kb on - strand at 194.823 kb on - strand at 194.823 kb on - strand at 195.116 kb on + strand, within GFF5092 at 195.117 kb on - strand, within GFF5092 at 195.117 kb on - strand, within GFF5092 at 195.117 kb on - strand, within GFF5092 at 195.179 kb on + strand, within GFF5092 at 195.198 kb on - strand, within GFF5092 at 195.215 kb on + strand, within GFF5092 at 195.215 kb on + strand, within GFF5092 at 195.215 kb on + strand, within GFF5092 at 195.216 kb on - strand, within GFF5092 at 195.277 kb on + strand, within GFF5092 at 195.277 kb on + strand, within GFF5092 at 195.425 kb on + strand, within GFF5092 at 195.628 kb on + strand at 195.629 kb on - strand at 195.629 kb on - strand at 195.629 kb on - strand at 195.854 kb on + strand, within GFF5093 at 195.854 kb on + strand, within GFF5093 at 195.901 kb on + strand, within GFF5093 at 195.902 kb on - strand, within GFF5093 at 195.902 kb on - strand, within GFF5093 at 195.905 kb on - strand, within GFF5093 at 195.943 kb on + strand, within GFF5093 at 195.944 kb on - strand, within GFF5093 at 195.944 kb on - strand, within GFF5093 at 195.967 kb on + strand, within GFF5093 at 195.968 kb on - strand, within GFF5093 at 195.968 kb on - strand, within GFF5093 at 196.567 kb on + strand, within GFF5093 at 196.568 kb on - strand, within GFF5093 at 196.660 kb on + strand, within GFF5093 at 196.660 kb on + strand, within GFF5093 at 196.660 kb on + strand, within GFF5093 at 196.660 kb on + strand, within GFF5093 at 196.660 kb on + strand, within GFF5093 at 196.661 kb on - strand, within GFF5093 at 196.661 kb on - strand, within GFF5093 at 196.795 kb on + strand, within GFF5093 at 196.811 kb on - strand, within GFF5093 at 196.811 kb on - strand, within GFF5093 at 196.811 kb on - strand, within GFF5093 at 196.811 kb on - strand, within GFF5093 at 196.811 kb on - strand, within GFF5093 at 196.967 kb on - strand at 196.967 kb on - strand at 197.304 kb on + strand, within GFF5094 at 197.304 kb on + strand, within GFF5094 at 197.368 kb on - strand, within GFF5094 at 197.593 kb on - strand, within GFF5094 at 197.593 kb on - strand, within GFF5094 at 197.770 kb on + strand, within GFF5094 at 197.771 kb on - strand, within GFF5094 at 197.771 kb on - strand, within GFF5094 at 197.970 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction Community=arabino-guar; Passage=4 remove 194,822 + +0.6 194,822 + -0.8 194,822 + -3.4 194,823 - -2.4 194,823 - -1.7 194,823 - -2.0 195,116 + GFF5092 0.40 -0.0 195,117 - GFF5092 0.40 -3.6 195,117 - GFF5092 0.40 -1.8 195,117 - GFF5092 0.40 -3.2 195,179 + GFF5092 0.48 +0.3 195,198 - GFF5092 0.51 +0.6 195,215 + GFF5092 0.53 -2.4 195,215 + GFF5092 0.53 +4.2 195,215 + GFF5092 0.53 +0.9 195,216 - GFF5092 0.53 -2.7 195,277 + GFF5092 0.61 -0.0 195,277 + GFF5092 0.61 -0.3 195,425 + GFF5092 0.80 -1.6 195,628 + -0.3 195,629 - -1.3 195,629 - -1.6 195,629 - +1.2 195,854 + GFF5093 0.19 -0.8 195,854 + GFF5093 0.19 +1.0 195,901 + GFF5093 0.22 -0.8 195,902 - GFF5093 0.22 -2.0 195,902 - GFF5093 0.22 +1.9 195,905 - GFF5093 0.22 +3.0 195,943 + GFF5093 0.25 +1.2 195,944 - GFF5093 0.25 -0.8 195,944 - GFF5093 0.25 -1.3 195,967 + GFF5093 0.26 +1.2 195,968 - GFF5093 0.27 -2.2 195,968 - GFF5093 0.27 -0.0 196,567 + GFF5093 0.67 +0.2 196,568 - GFF5093 0.67 +0.6 196,660 + GFF5093 0.74 +0.1 196,660 + GFF5093 0.74 -1.5 196,660 + GFF5093 0.74 -0.6 196,660 + GFF5093 0.74 -3.7 196,660 + GFF5093 0.74 -0.5 196,661 - GFF5093 0.74 +2.0 196,661 - GFF5093 0.74 -0.2 196,795 + GFF5093 0.83 -1.4 196,811 - GFF5093 0.84 +1.1 196,811 - GFF5093 0.84 -1.0 196,811 - GFF5093 0.84 +0.1 196,811 - GFF5093 0.84 -3.0 196,811 - GFF5093 0.84 -2.0 196,967 - +0.6 196,967 - +2.2 197,304 + GFF5094 0.27 -1.3 197,304 + GFF5094 0.27 -0.8 197,368 - GFF5094 0.33 -4.0 197,593 - GFF5094 0.56 +1.8 197,593 - GFF5094 0.56 +0.6 197,770 + GFF5094 0.75 -1.8 197,771 - GFF5094 0.75 -1.5 197,771 - GFF5094 0.75 -2.0 197,970 + -1.1
Or see this region's nucleotide sequence