Strain Fitness in Variovorax sp. SCN45 around GFF5085

Experiment: Community=arabino-guar; Passage=4

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntGFF5083 and GFF5084 are separated by 7 nucleotidesGFF5084 and GFF5085 are separated by 184 nucleotidesGFF5085 and GFF5086 are separated by 62 nucleotides GFF5083 - Transcriptional regulator, LysR family, at 186,886 to 187,833 GFF5083 GFF5084 - FIG00933367: hypothetical protein, at 187,841 to 188,278 GFF5084 GFF5085 - hypothetical protein, at 188,463 to 188,918 GFF5085 GFF5086 - Glycine betaine transporter OpuD, at 188,981 to 190,495 GFF5086 Position (kb) 188 189Strain fitness (log2 ratio) -3 -2 -1 0 1 2 3at 187.830 kb on + strandat 187.831 kb on + strandat 187.831 kb on + strandat 187.831 kb on + strandat 187.831 kb on + strandat 187.831 kb on + strandat 187.832 kb on - strandat 187.832 kb on - strandat 187.832 kb on - strandat 187.832 kb on - strandat 187.832 kb on - strandat 187.832 kb on - strandat 187.832 kb on - strandat 187.832 kb on - strandat 187.832 kb on - strandat 187.941 kb on + strand, within GFF5084at 187.942 kb on - strand, within GFF5084at 187.942 kb on - strand, within GFF5084at 187.942 kb on - strand, within GFF5084at 187.942 kb on - strand, within GFF5084at 187.968 kb on + strand, within GFF5084at 187.968 kb on + strand, within GFF5084at 187.969 kb on - strand, within GFF5084at 187.969 kb on - strand, within GFF5084at 188.091 kb on + strand, within GFF5084at 188.091 kb on + strand, within GFF5084at 188.092 kb on - strand, within GFF5084at 188.092 kb on - strand, within GFF5084at 188.092 kb on - strand, within GFF5084at 188.343 kb on + strandat 188.378 kb on + strandat 188.378 kb on + strandat 188.462 kb on + strandat 188.462 kb on + strandat 188.462 kb on + strandat 188.462 kb on + strandat 188.462 kb on + strandat 188.463 kb on - strandat 188.541 kb on + strand, within GFF5085at 188.541 kb on + strand, within GFF5085at 188.541 kb on + strand, within GFF5085at 188.541 kb on + strand, within GFF5085at 188.541 kb on + strand, within GFF5085at 188.542 kb on - strand, within GFF5085at 188.542 kb on - strand, within GFF5085at 188.592 kb on + strand, within GFF5085at 188.592 kb on + strand, within GFF5085at 188.592 kb on + strand, within GFF5085at 188.592 kb on + strand, within GFF5085at 188.592 kb on + strand, within GFF5085at 188.592 kb on + strand, within GFF5085at 188.592 kb on + strand, within GFF5085at 188.592 kb on + strand, within GFF5085at 188.592 kb on + strand, within GFF5085at 188.592 kb on + strand, within GFF5085at 188.592 kb on + strand, within GFF5085at 188.593 kb on - strand, within GFF5085at 188.593 kb on - strand, within GFF5085at 188.593 kb on - strand, within GFF5085at 188.593 kb on - strand, within GFF5085at 188.593 kb on - strand, within GFF5085at 188.593 kb on - strand, within GFF5085at 188.640 kb on + strand, within GFF5085at 188.641 kb on - strand, within GFF5085at 188.667 kb on + strand, within GFF5085at 188.835 kb on + strand, within GFF5085at 188.835 kb on + strand, within GFF5085at 188.835 kb on + strand, within GFF5085at 188.836 kb on - strand, within GFF5085at 188.925 kb on + strandat 188.926 kb on - strandat 188.926 kb on - strandat 188.926 kb on - strandat 189.131 kb on + strandat 189.131 kb on + strandat 189.131 kb on + strandat 189.131 kb on + strandat 189.131 kb on + strandat 189.132 kb on - strandat 189.132 kb on - strandat 189.368 kb on + strand, within GFF5086at 189.368 kb on + strand, within GFF5086at 189.368 kb on + strand, within GFF5086at 189.368 kb on + strand, within GFF5086at 189.368 kb on + strand, within GFF5086at 189.369 kb on - strand, within GFF5086at 189.369 kb on - strand, within GFF5086at 189.369 kb on - strand, within GFF5086at 189.369 kb on - strand, within GFF5086at 189.369 kb on - strand, within GFF5086at 189.577 kb on - strand, within GFF5086at 189.577 kb on - strand, within GFF5086at 189.657 kb on + strand, within GFF5086at 189.657 kb on + strand, within GFF5086at 189.657 kb on + strand, within GFF5086at 189.658 kb on - strand, within GFF5086at 189.658 kb on - strand, within GFF5086at 189.658 kb on - strand, within GFF5086at 189.658 kb on - strand, within GFF5086

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Per-strain Table

Position Strand Gene LocusTag Fraction Community=arabino-guar; Passage=4
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187,830 + -0.1
187,831 + -3.4
187,831 + -0.7
187,831 + +0.6
187,831 + -0.4
187,831 + -1.0
187,832 - +0.8
187,832 - +0.6
187,832 - -0.0
187,832 - -1.3
187,832 - -0.3
187,832 - -2.1
187,832 - -1.3
187,832 - +0.6
187,832 - +1.6
187,941 + GFF5084 0.23 -1.3
187,942 - GFF5084 0.23 -2.3
187,942 - GFF5084 0.23 -1.0
187,942 - GFF5084 0.23 -0.4
187,942 - GFF5084 0.23 -3.6
187,968 + GFF5084 0.29 -0.1
187,968 + GFF5084 0.29 -1.4
187,969 - GFF5084 0.29 -2.4
187,969 - GFF5084 0.29 +1.6
188,091 + GFF5084 0.57 -1.9
188,091 + GFF5084 0.57 +0.6
188,092 - GFF5084 0.57 +0.4
188,092 - GFF5084 0.57 -0.1
188,092 - GFF5084 0.57 +1.8
188,343 + +0.4
188,378 + -2.8
188,378 + +0.4
188,462 + -1.0
188,462 + -2.5
188,462 + -0.2
188,462 + +0.6
188,462 + -0.4
188,463 - -0.9
188,541 + GFF5085 0.17 +0.2
188,541 + GFF5085 0.17 +1.1
188,541 + GFF5085 0.17 +1.8
188,541 + GFF5085 0.17 +2.5
188,541 + GFF5085 0.17 +0.3
188,542 - GFF5085 0.17 -1.7
188,542 - GFF5085 0.17 -1.3
188,592 + GFF5085 0.28 -0.1
188,592 + GFF5085 0.28 +0.6
188,592 + GFF5085 0.28 -1.0
188,592 + GFF5085 0.28 -0.4
188,592 + GFF5085 0.28 -2.1
188,592 + GFF5085 0.28 -3.4
188,592 + GFF5085 0.28 +1.2
188,592 + GFF5085 0.28 -2.6
188,592 + GFF5085 0.28 +1.3
188,592 + GFF5085 0.28 +0.3
188,592 + GFF5085 0.28 +0.6
188,593 - GFF5085 0.29 -0.2
188,593 - GFF5085 0.29 -0.2
188,593 - GFF5085 0.29 -0.4
188,593 - GFF5085 0.29 +2.7
188,593 - GFF5085 0.29 +1.4
188,593 - GFF5085 0.29 +0.9
188,640 + GFF5085 0.39 +1.5
188,641 - GFF5085 0.39 -2.2
188,667 + GFF5085 0.45 -2.3
188,835 + GFF5085 0.82 +0.2
188,835 + GFF5085 0.82 -2.0
188,835 + GFF5085 0.82 -0.8
188,836 - GFF5085 0.82 +0.5
188,925 + -0.6
188,926 - -1.9
188,926 - +0.8
188,926 - -2.6
189,131 + -2.0
189,131 + -0.9
189,131 + -0.1
189,131 + +0.3
189,131 + +3.1
189,132 - -0.5
189,132 - -1.0
189,368 + GFF5086 0.26 -3.1
189,368 + GFF5086 0.26 +1.3
189,368 + GFF5086 0.26 -1.7
189,368 + GFF5086 0.26 +1.2
189,368 + GFF5086 0.26 -2.4
189,369 - GFF5086 0.26 +0.2
189,369 - GFF5086 0.26 -2.1
189,369 - GFF5086 0.26 +1.6
189,369 - GFF5086 0.26 -2.8
189,369 - GFF5086 0.26 +1.4
189,577 - GFF5086 0.39 +1.8
189,577 - GFF5086 0.39 +1.3
189,657 + GFF5086 0.45 -0.8
189,657 + GFF5086 0.45 -0.1
189,657 + GFF5086 0.45 -1.9
189,658 - GFF5086 0.45 -1.7
189,658 - GFF5086 0.45 -2.7
189,658 - GFF5086 0.45 -2.4
189,658 - GFF5086 0.45 -2.3

Or see this region's nucleotide sequence