Experiment: Community=arabino-guar; Passage=4
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt GFF4949 and GFF4950 overlap by 4 nucleotides GFF4950 and GFF4951 overlap by 4 nucleotides
GFF4949 - ABC transporter, ATP-binding protein (cluster 2, ribose/xylose/arabinose/galactose) / ABC transporter, ATP-binding protein (cluster 2, ribose/xylose/arabinose/galactose), at 44,889 to 46,412
GFF4949
GFF4950 - ABC transporter, permease protein (cluster 2, ribose/xylose/arabinose/galactose), at 46,409 to 47,437
GFF4950
GFF4951 - Uncharacterized oxidoreductase YdjG, at 47,434 to 48,438
GFF4951
Position (kb) 46
47
48 Strain fitness (log2 ratio) -4
-3
-2
-1
0
1
2
3 at 45.483 kb on + strand, within GFF4949 at 45.483 kb on + strand, within GFF4949 at 45.484 kb on - strand, within GFF4949 at 45.484 kb on - strand, within GFF4949 at 45.484 kb on - strand, within GFF4949 at 45.509 kb on - strand, within GFF4949 at 45.630 kb on + strand, within GFF4949 at 45.630 kb on + strand, within GFF4949 at 45.630 kb on + strand, within GFF4949 at 45.630 kb on + strand, within GFF4949 at 45.630 kb on + strand, within GFF4949 at 45.631 kb on - strand, within GFF4949 at 45.631 kb on - strand, within GFF4949 at 45.631 kb on - strand, within GFF4949 at 45.631 kb on - strand, within GFF4949 at 45.631 kb on - strand, within GFF4949 at 45.631 kb on - strand, within GFF4949 at 45.634 kb on - strand, within GFF4949 at 45.634 kb on - strand, within GFF4949 at 45.867 kb on + strand, within GFF4949 at 45.867 kb on + strand, within GFF4949 at 45.868 kb on - strand, within GFF4949 at 45.897 kb on + strand, within GFF4949 at 45.898 kb on - strand, within GFF4949 at 45.898 kb on - strand, within GFF4949 at 45.930 kb on + strand, within GFF4949 at 46.309 kb on + strand at 46.574 kb on + strand, within GFF4950 at 47.054 kb on + strand, within GFF4950 at 47.084 kb on + strand, within GFF4950 at 47.084 kb on + strand, within GFF4950 at 47.166 kb on - strand, within GFF4950 at 47.166 kb on - strand, within GFF4950 at 47.166 kb on - strand, within GFF4950 at 47.836 kb on + strand, within GFF4951 at 47.837 kb on - strand, within GFF4951 at 47.848 kb on + strand, within GFF4951 at 47.848 kb on + strand, within GFF4951 at 47.849 kb on - strand, within GFF4951 at 47.849 kb on - strand, within GFF4951 at 47.849 kb on - strand, within GFF4951 at 47.978 kb on - strand, within GFF4951 at 47.978 kb on - strand, within GFF4951 at 48.091 kb on + strand, within GFF4951 at 48.314 kb on + strand, within GFF4951 at 48.314 kb on + strand, within GFF4951
Per-strain Table
Position Strand Gene LocusTag Fraction Community=arabino-guar; Passage=4 remove 45,483 + GFF4949 0.39 +0.9 45,483 + GFF4949 0.39 -1.0 45,484 - GFF4949 0.39 -2.9 45,484 - GFF4949 0.39 -0.4 45,484 - GFF4949 0.39 -1.1 45,509 - GFF4949 0.41 -0.1 45,630 + GFF4949 0.49 -1.6 45,630 + GFF4949 0.49 -2.0 45,630 + GFF4949 0.49 -2.4 45,630 + GFF4949 0.49 -1.0 45,630 + GFF4949 0.49 -1.3 45,631 - GFF4949 0.49 -0.5 45,631 - GFF4949 0.49 -0.3 45,631 - GFF4949 0.49 -2.1 45,631 - GFF4949 0.49 +0.0 45,631 - GFF4949 0.49 -1.8 45,631 - GFF4949 0.49 -2.7 45,634 - GFF4949 0.49 +0.2 45,634 - GFF4949 0.49 -0.9 45,867 + GFF4949 0.64 -1.2 45,867 + GFF4949 0.64 -4.3 45,868 - GFF4949 0.64 +1.0 45,897 + GFF4949 0.66 +0.3 45,898 - GFF4949 0.66 -2.4 45,898 - GFF4949 0.66 +1.3 45,930 + GFF4949 0.68 -0.2 46,309 + -1.6 46,574 + GFF4950 0.16 -2.2 47,054 + GFF4950 0.63 -1.5 47,084 + GFF4950 0.66 -1.7 47,084 + GFF4950 0.66 -0.6 47,166 - GFF4950 0.74 -1.5 47,166 - GFF4950 0.74 +0.1 47,166 - GFF4950 0.74 -1.3 47,836 + GFF4951 0.40 +2.8 47,837 - GFF4951 0.40 +0.2 47,848 + GFF4951 0.41 -0.3 47,848 + GFF4951 0.41 -1.7 47,849 - GFF4951 0.41 -1.0 47,849 - GFF4951 0.41 -0.1 47,849 - GFF4951 0.41 -0.3 47,978 - GFF4951 0.54 +0.6 47,978 - GFF4951 0.54 +2.8 48,091 + GFF4951 0.65 -0.1 48,314 + GFF4951 0.88 +0.3 48,314 + GFF4951 0.88 -1.1
Or see this region's nucleotide sequence