Experiment: Community=arabino-guar; Passage=4
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt GFF4902 and GFF4903 overlap by 4 nucleotides GFF4903 and GFF4904 are separated by 44 nucleotides GFF4904 and GFF4905 are separated by 16 nucleotides
GFF4902 - hypothetical protein, at 267,458 to 268,879
GFF4902
GFF4903 - no description, at 268,876 to 269,082
GFF4903
GFF4904 - hypothetical protein, at 269,127 to 269,723
GFF4904
GFF4905 - hypothetical protein, at 269,740 to 271,149
GFF4905
Position (kb) 268
269
270 Strain fitness (log2 ratio) -4
-3
-2
-1
0
1
2
3
4 at 268.205 kb on + strand, within GFF4902 at 268.205 kb on + strand, within GFF4902 at 268.205 kb on + strand, within GFF4902 at 268.205 kb on + strand, within GFF4902 at 268.205 kb on + strand, within GFF4902 at 268.206 kb on - strand, within GFF4902 at 268.270 kb on - strand, within GFF4902 at 268.270 kb on - strand, within GFF4902 at 268.270 kb on - strand, within GFF4902 at 268.270 kb on - strand, within GFF4902 at 268.270 kb on - strand, within GFF4902 at 268.448 kb on + strand, within GFF4902 at 268.448 kb on + strand, within GFF4902 at 268.449 kb on - strand, within GFF4902 at 268.449 kb on - strand, within GFF4902 at 268.449 kb on - strand, within GFF4902 at 268.802 kb on + strand at 268.802 kb on + strand at 269.024 kb on - strand, within GFF4903 at 269.126 kb on + strand at 269.126 kb on + strand at 269.127 kb on - strand at 269.140 kb on + strand at 269.371 kb on - strand, within GFF4904 at 269.385 kb on + strand, within GFF4904 at 269.385 kb on + strand, within GFF4904 at 269.385 kb on + strand, within GFF4904 at 269.385 kb on + strand, within GFF4904 at 269.385 kb on + strand, within GFF4904 at 269.385 kb on + strand, within GFF4904 at 269.386 kb on - strand, within GFF4904 at 269.386 kb on - strand, within GFF4904 at 269.386 kb on - strand, within GFF4904 at 269.386 kb on - strand, within GFF4904 at 269.386 kb on - strand, within GFF4904 at 269.386 kb on - strand, within GFF4904 at 269.400 kb on + strand, within GFF4904 at 269.400 kb on + strand, within GFF4904 at 269.400 kb on + strand, within GFF4904 at 269.400 kb on + strand, within GFF4904 at 269.400 kb on + strand, within GFF4904 at 269.401 kb on - strand, within GFF4904 at 269.401 kb on - strand, within GFF4904 at 269.401 kb on - strand, within GFF4904 at 269.401 kb on - strand, within GFF4904 at 269.401 kb on - strand, within GFF4904 at 269.401 kb on - strand, within GFF4904 at 269.401 kb on - strand, within GFF4904 at 269.415 kb on + strand, within GFF4904 at 269.415 kb on + strand, within GFF4904 at 269.415 kb on + strand, within GFF4904 at 269.415 kb on + strand, within GFF4904 at 269.415 kb on + strand, within GFF4904 at 269.416 kb on - strand, within GFF4904 at 269.416 kb on - strand, within GFF4904 at 269.416 kb on - strand, within GFF4904 at 269.416 kb on - strand, within GFF4904 at 269.416 kb on - strand, within GFF4904 at 269.660 kb on + strand, within GFF4904 at 269.661 kb on - strand, within GFF4904 at 270.011 kb on - strand, within GFF4905 at 270.011 kb on - strand, within GFF4905 at 270.011 kb on - strand, within GFF4905 at 270.022 kb on + strand, within GFF4905 at 270.023 kb on - strand, within GFF4905 at 270.023 kb on - strand, within GFF4905 at 270.023 kb on - strand, within GFF4905 at 270.023 kb on - strand, within GFF4905 at 270.023 kb on - strand, within GFF4905 at 270.024 kb on - strand, within GFF4905 at 270.073 kb on + strand, within GFF4905 at 270.073 kb on + strand, within GFF4905 at 270.073 kb on + strand, within GFF4905
Per-strain Table
Position Strand Gene LocusTag Fraction Community=arabino-guar; Passage=4 remove 268,205 + GFF4902 0.53 +0.2 268,205 + GFF4902 0.53 -2.1 268,205 + GFF4902 0.53 -2.1 268,205 + GFF4902 0.53 +1.6 268,205 + GFF4902 0.53 +4.6 268,206 - GFF4902 0.53 -1.1 268,270 - GFF4902 0.57 +1.9 268,270 - GFF4902 0.57 +1.5 268,270 - GFF4902 0.57 +2.5 268,270 - GFF4902 0.57 +1.7 268,270 - GFF4902 0.57 -1.3 268,448 + GFF4902 0.70 +0.7 268,448 + GFF4902 0.70 +0.3 268,449 - GFF4902 0.70 +1.3 268,449 - GFF4902 0.70 +2.7 268,449 - GFF4902 0.70 +0.3 268,802 + +0.9 268,802 + -1.1 269,024 - GFF4903 0.71 -2.1 269,126 + -1.0 269,126 + -1.0 269,127 - -2.5 269,140 + -0.2 269,371 - GFF4904 0.41 -0.7 269,385 + GFF4904 0.43 -3.0 269,385 + GFF4904 0.43 -1.1 269,385 + GFF4904 0.43 +0.7 269,385 + GFF4904 0.43 -2.8 269,385 + GFF4904 0.43 -1.1 269,385 + GFF4904 0.43 -0.5 269,386 - GFF4904 0.43 +0.6 269,386 - GFF4904 0.43 -0.2 269,386 - GFF4904 0.43 +0.6 269,386 - GFF4904 0.43 +1.9 269,386 - GFF4904 0.43 -1.3 269,386 - GFF4904 0.43 +0.7 269,400 + GFF4904 0.46 -0.2 269,400 + GFF4904 0.46 -1.3 269,400 + GFF4904 0.46 -0.6 269,400 + GFF4904 0.46 +1.0 269,400 + GFF4904 0.46 -2.2 269,401 - GFF4904 0.46 -1.1 269,401 - GFF4904 0.46 +0.3 269,401 - GFF4904 0.46 -0.8 269,401 - GFF4904 0.46 -2.6 269,401 - GFF4904 0.46 +0.8 269,401 - GFF4904 0.46 +2.5 269,401 - GFF4904 0.46 +0.3 269,415 + GFF4904 0.48 -0.0 269,415 + GFF4904 0.48 -1.6 269,415 + GFF4904 0.48 -1.2 269,415 + GFF4904 0.48 -1.8 269,415 + GFF4904 0.48 -1.5 269,416 - GFF4904 0.48 +0.4 269,416 - GFF4904 0.48 +0.6 269,416 - GFF4904 0.48 -0.9 269,416 - GFF4904 0.48 -3.5 269,416 - GFF4904 0.48 -0.3 269,660 + GFF4904 0.89 +1.2 269,661 - GFF4904 0.89 -0.6 270,011 - GFF4905 0.19 -1.2 270,011 - GFF4905 0.19 -0.9 270,011 - GFF4905 0.19 +1.0 270,022 + GFF4905 0.20 -0.2 270,023 - GFF4905 0.20 +1.1 270,023 - GFF4905 0.20 -0.1 270,023 - GFF4905 0.20 +2.5 270,023 - GFF4905 0.20 +1.3 270,023 - GFF4905 0.20 -4.1 270,024 - GFF4905 0.20 +1.1 270,073 + GFF4905 0.24 +0.7 270,073 + GFF4905 0.24 +1.5 270,073 + GFF4905 0.24 +0.8
Or see this region's nucleotide sequence