Strain Fitness in Variovorax sp. SCN45 around GFF4794

Experiment: Community=arabino-guar; Passage=4

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntGFF4793 and GFF4794 are separated by 4 nucleotidesGFF4794 and GFF4795 overlap by 4 nucleotidesGFF4795 and GFF4796 are separated by 116 nucleotides GFF4793 - Homoserine dehydrogenase (EC 1.1.1.3), at 163,162 to 164,523 GFF4793 GFF4794 - Ectoine hydroxylase (EC 1.17.-.-), at 164,528 to 165,403 GFF4794 GFF4795 - predicted biotin regulatory protein BioR (GntR family), at 165,400 to 166,107 GFF4795 GFF4796 - L-threo-3-hydroxyaspartate ammonia-lyase (EC 4.3.1.16), at 166,224 to 167,183 GFF4796 Position (kb) 164 165 166Strain fitness (log2 ratio) -3 -2 -1 0 1 2at 163.541 kb on + strand, within GFF4793at 163.542 kb on - strand, within GFF4793at 163.553 kb on + strand, within GFF4793at 163.553 kb on + strand, within GFF4793at 163.553 kb on + strand, within GFF4793at 163.553 kb on + strand, within GFF4793at 163.583 kb on + strand, within GFF4793at 163.583 kb on + strand, within GFF4793at 163.584 kb on - strand, within GFF4793at 163.607 kb on + strand, within GFF4793at 163.607 kb on + strand, within GFF4793at 163.607 kb on + strand, within GFF4793at 163.607 kb on + strand, within GFF4793at 163.608 kb on - strand, within GFF4793at 163.655 kb on + strand, within GFF4793at 163.655 kb on + strand, within GFF4793at 163.655 kb on + strand, within GFF4793at 163.655 kb on + strand, within GFF4793at 163.781 kb on + strand, within GFF4793at 163.925 kb on + strand, within GFF4793at 163.925 kb on + strand, within GFF4793at 163.925 kb on + strand, within GFF4793at 163.925 kb on + strand, within GFF4793at 163.925 kb on + strand, within GFF4793at 163.926 kb on - strand, within GFF4793at 164.075 kb on + strand, within GFF4793at 164.432 kb on + strandat 164.432 kb on + strandat 164.432 kb on + strandat 164.432 kb on + strandat 164.432 kb on + strandat 164.432 kb on + strandat 164.433 kb on - strandat 164.433 kb on - strandat 164.605 kb on - strandat 164.676 kb on + strand, within GFF4794at 164.676 kb on + strand, within GFF4794at 164.677 kb on - strand, within GFF4794at 164.677 kb on - strand, within GFF4794at 164.677 kb on - strand, within GFF4794at 164.677 kb on - strand, within GFF4794at 164.730 kb on + strand, within GFF4794at 164.731 kb on - strand, within GFF4794at 164.904 kb on + strand, within GFF4794at 164.904 kb on + strand, within GFF4794at 164.905 kb on - strand, within GFF4794at 164.905 kb on - strand, within GFF4794at 164.905 kb on - strand, within GFF4794at 165.066 kb on + strand, within GFF4794at 165.135 kb on + strand, within GFF4794at 165.135 kb on + strand, within GFF4794at 165.135 kb on + strand, within GFF4794at 165.135 kb on + strand, within GFF4794at 165.135 kb on + strand, within GFF4794at 165.135 kb on + strand, within GFF4794at 165.135 kb on + strand, within GFF4794at 165.135 kb on + strand, within GFF4794at 165.135 kb on + strand, within GFF4794at 165.135 kb on + strand, within GFF4794at 165.135 kb on + strand, within GFF4794at 165.136 kb on - strand, within GFF4794at 165.136 kb on - strand, within GFF4794at 165.136 kb on - strand, within GFF4794at 165.136 kb on - strand, within GFF4794at 165.136 kb on - strand, within GFF4794at 165.136 kb on - strand, within GFF4794at 165.289 kb on - strand, within GFF4794at 165.289 kb on - strand, within GFF4794at 165.289 kb on - strand, within GFF4794at 165.357 kb on + strandat 165.357 kb on + strandat 165.357 kb on + strandat 165.358 kb on - strandat 165.686 kb on + strand, within GFF4795at 165.686 kb on + strand, within GFF4795at 165.686 kb on + strand, within GFF4795at 165.686 kb on + strand, within GFF4795at 165.686 kb on + strand, within GFF4795at 165.686 kb on + strand, within GFF4795at 165.687 kb on - strand, within GFF4795at 165.687 kb on - strand, within GFF4795at 165.687 kb on - strand, within GFF4795at 165.687 kb on - strand, within GFF4795at 165.845 kb on + strand, within GFF4795at 165.846 kb on - strand, within GFF4795at 166.052 kb on + strandat 166.135 kb on + strandat 166.163 kb on + strandat 166.164 kb on - strandat 166.164 kb on - strandat 166.231 kb on + strandat 166.231 kb on + strandat 166.231 kb on + strandat 166.231 kb on + strandat 166.231 kb on + strandat 166.231 kb on + strandat 166.231 kb on + strandat 166.231 kb on + strandat 166.231 kb on + strandat 166.232 kb on - strandat 166.232 kb on - strandat 166.232 kb on - strandat 166.232 kb on - strandat 166.232 kb on - strandat 166.232 kb on - strandat 166.232 kb on - strandat 166.232 kb on - strandat 166.232 kb on - strandat 166.232 kb on - strandat 166.232 kb on - strandat 166.232 kb on - strandat 166.232 kb on - strandat 166.232 kb on - strandat 166.235 kb on + strandat 166.235 kb on + strandat 166.235 kb on + strandat 166.235 kb on + strandat 166.235 kb on + strandat 166.235 kb on + strandat 166.236 kb on - strandat 166.236 kb on - strandat 166.236 kb on - strandat 166.236 kb on - strandat 166.236 kb on - strandat 166.239 kb on + strandat 166.239 kb on + strandat 166.239 kb on + strandat 166.239 kb on + strandat 166.240 kb on - strandat 166.240 kb on - strandat 166.240 kb on - strandat 166.240 kb on - strandat 166.240 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction Community=arabino-guar; Passage=4
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163,541 + GFF4793 0.28 -0.8
163,542 - GFF4793 0.28 +0.1
163,553 + GFF4793 0.29 +0.8
163,553 + GFF4793 0.29 -0.2
163,553 + GFF4793 0.29 -0.1
163,553 + GFF4793 0.29 -0.3
163,583 + GFF4793 0.31 -0.3
163,583 + GFF4793 0.31 -1.0
163,584 - GFF4793 0.31 -2.3
163,607 + GFF4793 0.33 -0.5
163,607 + GFF4793 0.33 -1.0
163,607 + GFF4793 0.33 -1.1
163,607 + GFF4793 0.33 -1.8
163,608 - GFF4793 0.33 -0.3
163,655 + GFF4793 0.36 -0.9
163,655 + GFF4793 0.36 +1.6
163,655 + GFF4793 0.36 -0.6
163,655 + GFF4793 0.36 +1.7
163,781 + GFF4793 0.45 +0.8
163,925 + GFF4793 0.56 +0.2
163,925 + GFF4793 0.56 +0.2
163,925 + GFF4793 0.56 +1.7
163,925 + GFF4793 0.56 -2.3
163,925 + GFF4793 0.56 +0.3
163,926 - GFF4793 0.56 -2.0
164,075 + GFF4793 0.67 -1.5
164,432 + -0.5
164,432 + -2.7
164,432 + +0.7
164,432 + +0.3
164,432 + -0.6
164,432 + +1.7
164,433 - +0.0
164,433 - +0.7
164,605 - +0.5
164,676 + GFF4794 0.17 -1.5
164,676 + GFF4794 0.17 -1.0
164,677 - GFF4794 0.17 -0.6
164,677 - GFF4794 0.17 +0.3
164,677 - GFF4794 0.17 -1.5
164,677 - GFF4794 0.17 -0.2
164,730 + GFF4794 0.23 -1.9
164,731 - GFF4794 0.23 -0.3
164,904 + GFF4794 0.43 -0.0
164,904 + GFF4794 0.43 +1.3
164,905 - GFF4794 0.43 -3.2
164,905 - GFF4794 0.43 +0.1
164,905 - GFF4794 0.43 -2.7
165,066 + GFF4794 0.61 +2.7
165,135 + GFF4794 0.69 +0.7
165,135 + GFF4794 0.69 -3.1
165,135 + GFF4794 0.69 +0.4
165,135 + GFF4794 0.69 -1.8
165,135 + GFF4794 0.69 -1.3
165,135 + GFF4794 0.69 -1.5
165,135 + GFF4794 0.69 -1.1
165,135 + GFF4794 0.69 -0.7
165,135 + GFF4794 0.69 +0.4
165,135 + GFF4794 0.69 -2.2
165,135 + GFF4794 0.69 -0.9
165,136 - GFF4794 0.69 -1.5
165,136 - GFF4794 0.69 +0.4
165,136 - GFF4794 0.69 +0.1
165,136 - GFF4794 0.69 -0.3
165,136 - GFF4794 0.69 -1.0
165,136 - GFF4794 0.69 +0.0
165,289 - GFF4794 0.87 -1.2
165,289 - GFF4794 0.87 +1.7
165,289 - GFF4794 0.87 -1.9
165,357 + -1.6
165,357 + +1.0
165,357 + +0.1
165,358 - -3.2
165,686 + GFF4795 0.40 -0.9
165,686 + GFF4795 0.40 -0.1
165,686 + GFF4795 0.40 +0.7
165,686 + GFF4795 0.40 -0.3
165,686 + GFF4795 0.40 +0.4
165,686 + GFF4795 0.40 -2.0
165,687 - GFF4795 0.41 +2.0
165,687 - GFF4795 0.41 +0.4
165,687 - GFF4795 0.41 -0.2
165,687 - GFF4795 0.41 +1.3
165,845 + GFF4795 0.63 +0.6
165,846 - GFF4795 0.63 -1.2
166,052 + +1.0
166,135 + -0.2
166,163 + -1.1
166,164 - -2.4
166,164 - +1.4
166,231 + -0.4
166,231 + +1.3
166,231 + -2.1
166,231 + -1.1
166,231 + +0.1
166,231 + -1.8
166,231 + +2.0
166,231 + +0.9
166,231 + +0.5
166,232 - -0.4
166,232 - -2.4
166,232 - +0.1
166,232 - +1.6
166,232 - -2.1
166,232 - +0.6
166,232 - -3.6
166,232 - +0.5
166,232 - +0.8
166,232 - +1.7
166,232 - -1.5
166,232 - -1.6
166,232 - -2.0
166,232 - +2.7
166,235 + -1.3
166,235 + -1.4
166,235 + -3.3
166,235 + +2.1
166,235 + -2.2
166,235 + +0.5
166,236 - -2.0
166,236 - +0.4
166,236 - -0.9
166,236 - -1.1
166,236 - -3.0
166,239 + -0.2
166,239 + +0.1
166,239 + +1.0
166,239 + -1.0
166,240 - +1.3
166,240 - +1.7
166,240 - -1.3
166,240 - -1.1
166,240 - -2.9

Or see this region's nucleotide sequence