Experiment: Community=arabino-guar; Passage=4
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt GFF4787 and GFF4788 overlap by 4 nucleotides GFF4788 and GFF4789 are separated by 13 nucleotides GFF4789 and GFF4790 are separated by 87 nucleotides GFF4790 and GFF4791 are separated by 5 nucleotides
GFF4787 - ADP-ribosylglycohydrolase family protein, at 158,493 to 159,389
GFF4787
GFF4788 - Uncharacterized protein COG3236, at 159,386 to 159,949
GFF4788
GFF4789 - FIG01126746: hypothetical protein, at 159,963 to 160,580
GFF4789
GFF4790 - Nudix-related transcriptional regulator NrtR, at 160,668 to 161,393
GFF4790
GFF4791 - RNA polymerase ECF-type sigma factor, at 161,399 to 162,634
GFF4791
Position (kb) 159
160
161 Strain fitness (log2 ratio) -3
-2
-1
0
1
2
3
4
5 at 158.974 kb on + strand, within GFF4787 at 158.975 kb on - strand, within GFF4787 at 158.975 kb on - strand, within GFF4787 at 158.975 kb on - strand, within GFF4787 at 159.130 kb on + strand, within GFF4787 at 159.130 kb on + strand, within GFF4787 at 159.130 kb on + strand, within GFF4787 at 159.130 kb on + strand, within GFF4787 at 159.131 kb on - strand, within GFF4787 at 159.131 kb on - strand, within GFF4787 at 159.154 kb on + strand, within GFF4787 at 159.216 kb on + strand, within GFF4787 at 159.217 kb on - strand, within GFF4787 at 159.217 kb on - strand, within GFF4787 at 159.373 kb on + strand at 159.374 kb on - strand at 159.783 kb on + strand, within GFF4788 at 159.882 kb on + strand, within GFF4788 at 159.882 kb on + strand, within GFF4788 at 160.231 kb on + strand, within GFF4789 at 160.348 kb on + strand, within GFF4789 at 160.348 kb on + strand, within GFF4789 at 160.349 kb on - strand, within GFF4789 at 160.349 kb on - strand, within GFF4789 at 160.435 kb on + strand, within GFF4789 at 160.435 kb on + strand, within GFF4789 at 160.466 kb on - strand, within GFF4789 at 160.611 kb on + strand at 160.612 kb on - strand at 160.617 kb on + strand at 160.618 kb on - strand at 160.630 kb on + strand at 160.630 kb on + strand at 160.630 kb on + strand at 160.630 kb on + strand at 160.630 kb on + strand at 160.631 kb on - strand at 160.631 kb on - strand at 160.631 kb on - strand at 160.631 kb on - strand at 160.631 kb on - strand at 160.633 kb on - strand at 160.636 kb on - strand at 160.918 kb on - strand, within GFF4790 at 160.989 kb on + strand, within GFF4790 at 160.989 kb on + strand, within GFF4790 at 160.989 kb on + strand, within GFF4790 at 160.989 kb on + strand, within GFF4790 at 160.990 kb on - strand, within GFF4790 at 160.990 kb on - strand, within GFF4790 at 160.990 kb on - strand, within GFF4790 at 161.148 kb on + strand, within GFF4790 at 161.148 kb on + strand, within GFF4790 at 161.148 kb on + strand, within GFF4790 at 161.148 kb on + strand, within GFF4790 at 161.149 kb on - strand, within GFF4790 at 161.149 kb on - strand, within GFF4790 at 161.211 kb on + strand, within GFF4790 at 161.211 kb on + strand, within GFF4790 at 161.211 kb on + strand, within GFF4790 at 161.211 kb on + strand, within GFF4790 at 161.211 kb on + strand, within GFF4790 at 161.212 kb on - strand, within GFF4790 at 161.212 kb on - strand, within GFF4790 at 161.212 kb on - strand, within GFF4790 at 161.212 kb on - strand, within GFF4790 at 161.391 kb on + strand at 161.391 kb on + strand at 161.391 kb on + strand at 161.392 kb on - strand at 161.392 kb on - strand at 161.427 kb on + strand at 161.427 kb on + strand at 161.428 kb on - strand at 161.473 kb on - strand at 161.544 kb on + strand, within GFF4791
Per-strain Table
Position Strand Gene LocusTag Fraction Community=arabino-guar; Passage=4 remove 158,974 + GFF4787 0.54 -1.9 158,975 - GFF4787 0.54 -1.5 158,975 - GFF4787 0.54 -1.0 158,975 - GFF4787 0.54 -0.7 159,130 + GFF4787 0.71 +2.8 159,130 + GFF4787 0.71 +0.2 159,130 + GFF4787 0.71 +1.9 159,130 + GFF4787 0.71 +1.8 159,131 - GFF4787 0.71 +0.4 159,131 - GFF4787 0.71 +4.8 159,154 + GFF4787 0.74 -2.1 159,216 + GFF4787 0.81 +1.0 159,217 - GFF4787 0.81 -0.8 159,217 - GFF4787 0.81 -3.6 159,373 + -2.5 159,374 - -0.9 159,783 + GFF4788 0.70 -1.1 159,882 + GFF4788 0.88 -0.4 159,882 + GFF4788 0.88 -0.1 160,231 + GFF4789 0.43 +1.1 160,348 + GFF4789 0.62 +1.4 160,348 + GFF4789 0.62 -1.3 160,349 - GFF4789 0.62 +0.5 160,349 - GFF4789 0.62 -1.9 160,435 + GFF4789 0.76 -0.1 160,435 + GFF4789 0.76 -1.6 160,466 - GFF4789 0.81 +3.5 160,611 + +1.7 160,612 - +0.1 160,617 + -0.1 160,618 - +0.1 160,630 + +1.5 160,630 + +0.0 160,630 + +0.7 160,630 + +0.3 160,630 + -1.5 160,631 - +1.7 160,631 - +1.1 160,631 - -2.2 160,631 - -0.9 160,631 - -0.7 160,633 - +1.8 160,636 - -1.6 160,918 - GFF4790 0.34 -2.1 160,989 + GFF4790 0.44 -0.1 160,989 + GFF4790 0.44 -0.2 160,989 + GFF4790 0.44 -0.6 160,989 + GFF4790 0.44 -1.1 160,990 - GFF4790 0.44 -1.6 160,990 - GFF4790 0.44 -0.3 160,990 - GFF4790 0.44 -1.3 161,148 + GFF4790 0.66 -0.9 161,148 + GFF4790 0.66 +0.1 161,148 + GFF4790 0.66 -0.9 161,148 + GFF4790 0.66 -2.3 161,149 - GFF4790 0.66 -2.1 161,149 - GFF4790 0.66 +0.7 161,211 + GFF4790 0.75 -2.4 161,211 + GFF4790 0.75 -0.1 161,211 + GFF4790 0.75 -3.3 161,211 + GFF4790 0.75 -0.9 161,211 + GFF4790 0.75 +0.4 161,212 - GFF4790 0.75 -1.5 161,212 - GFF4790 0.75 +0.8 161,212 - GFF4790 0.75 -0.6 161,212 - GFF4790 0.75 -0.3 161,391 + -3.1 161,391 + -0.9 161,391 + -1.1 161,392 - +0.2 161,392 - -0.3 161,427 + +0.1 161,427 + -1.5 161,428 - +0.4 161,473 - +3.1 161,544 + GFF4791 0.12 -1.6
Or see this region's nucleotide sequence