Strain Fitness in Variovorax sp. SCN45 around GFF4767

Experiment: Community=arabino-guar; Passage=4

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntGFF4765 and GFF4766 are separated by 7 nucleotidesGFF4766 and GFF4767 are separated by 24 nucleotidesGFF4767 and GFF4768 are separated by 187 nucleotidesGFF4768 and GFF4769 overlap by 8 nucleotides GFF4765 - ADP-ribose pyrophosphatase (EC 3.6.1.13), at 132,213 to 132,830 GFF4765 GFF4766 - identified by similarity to GB:AAK22812.1; match to protein family HMM PF06676, at 132,838 to 133,302 GFF4766 GFF4767 - Efflux ABC transporter, permease/ATP-binding protein, at 133,327 to 135,087 GFF4767 GFF4768 - Transcriptional regulator, MarR family, at 135,275 to 135,724 GFF4768 GFF4769 - Outer membrane factor (OMF) lipoprotein associated wth EmrAB-OMF efflux system, at 135,717 to 137,189 GFF4769 Position (kb) 133 134 135 136Strain fitness (log2 ratio) -4 -3 -2 -1 0 1 2 3at 132.341 kb on + strand, within GFF4765at 132.341 kb on + strand, within GFF4765at 132.341 kb on + strand, within GFF4765at 132.342 kb on - strand, within GFF4765at 132.342 kb on - strand, within GFF4765at 132.342 kb on - strand, within GFF4765at 132.342 kb on - strand, within GFF4765at 132.342 kb on - strand, within GFF4765at 132.342 kb on - strand, within GFF4765at 132.357 kb on + strand, within GFF4765at 132.358 kb on - strand, within GFF4765at 132.358 kb on - strand, within GFF4765at 132.538 kb on - strand, within GFF4765at 132.538 kb on - strand, within GFF4765at 132.588 kb on + strand, within GFF4765at 132.589 kb on - strand, within GFF4765at 132.608 kb on + strand, within GFF4765at 132.608 kb on + strand, within GFF4765at 132.608 kb on + strand, within GFF4765at 132.608 kb on + strand, within GFF4765at 132.608 kb on + strand, within GFF4765at 132.608 kb on + strand, within GFF4765at 132.608 kb on + strand, within GFF4765at 132.608 kb on + strand, within GFF4765at 132.608 kb on + strand, within GFF4765at 132.608 kb on + strand, within GFF4765at 132.608 kb on + strand, within GFF4765at 132.609 kb on - strand, within GFF4765at 132.609 kb on - strand, within GFF4765at 132.609 kb on - strand, within GFF4765at 132.609 kb on - strand, within GFF4765at 132.609 kb on - strand, within GFF4765at 132.609 kb on - strand, within GFF4765at 132.609 kb on - strand, within GFF4765at 132.609 kb on - strand, within GFF4765at 132.609 kb on - strand, within GFF4765at 132.609 kb on - strand, within GFF4765at 132.609 kb on - strand, within GFF4765at 132.612 kb on + strand, within GFF4765at 132.612 kb on + strand, within GFF4765at 132.612 kb on + strand, within GFF4765at 132.613 kb on - strand, within GFF4765at 132.613 kb on - strand, within GFF4765at 132.613 kb on - strand, within GFF4765at 132.613 kb on - strand, within GFF4765at 132.613 kb on - strand, within GFF4765at 133.174 kb on + strand, within GFF4766at 133.300 kb on + strandat 133.300 kb on + strandat 133.300 kb on + strandat 133.301 kb on - strandat 133.301 kb on - strandat 133.303 kb on + strandat 133.303 kb on + strandat 133.303 kb on + strandat 133.303 kb on + strandat 133.303 kb on + strandat 133.304 kb on - strandat 133.304 kb on - strandat 133.304 kb on - strandat 133.304 kb on - strandat 133.304 kb on - strandat 133.304 kb on - strandat 133.361 kb on + strandat 133.361 kb on + strandat 133.362 kb on - strandat 133.362 kb on - strandat 133.667 kb on + strand, within GFF4767at 133.668 kb on - strand, within GFF4767at 133.668 kb on - strand, within GFF4767at 133.870 kb on + strand, within GFF4767at 133.895 kb on + strand, within GFF4767at 133.895 kb on + strand, within GFF4767at 133.895 kb on + strand, within GFF4767at 133.895 kb on + strand, within GFF4767at 133.895 kb on + strand, within GFF4767at 133.896 kb on - strand, within GFF4767at 133.896 kb on - strand, within GFF4767at 133.896 kb on - strand, within GFF4767at 133.899 kb on - strand, within GFF4767at 134.025 kb on - strand, within GFF4767at 134.174 kb on + strand, within GFF4767at 134.174 kb on + strand, within GFF4767at 134.174 kb on + strand, within GFF4767at 134.174 kb on + strand, within GFF4767at 134.174 kb on + strand, within GFF4767at 134.174 kb on + strand, within GFF4767at 134.175 kb on - strand, within GFF4767at 134.219 kb on + strand, within GFF4767at 134.219 kb on + strand, within GFF4767at 134.219 kb on + strand, within GFF4767at 134.220 kb on - strand, within GFF4767at 134.220 kb on - strand, within GFF4767at 134.220 kb on - strand, within GFF4767at 134.220 kb on - strand, within GFF4767at 134.220 kb on - strand, within GFF4767at 134.285 kb on + strand, within GFF4767at 134.286 kb on - strand, within GFF4767at 134.286 kb on - strand, within GFF4767at 134.286 kb on - strand, within GFF4767at 134.429 kb on + strand, within GFF4767at 134.429 kb on + strand, within GFF4767at 134.429 kb on + strand, within GFF4767at 134.429 kb on + strand, within GFF4767at 134.429 kb on + strand, within GFF4767at 134.430 kb on - strand, within GFF4767at 134.430 kb on - strand, within GFF4767at 134.430 kb on - strand, within GFF4767at 134.430 kb on - strand, within GFF4767at 134.591 kb on + strand, within GFF4767at 134.591 kb on + strand, within GFF4767at 134.591 kb on + strand, within GFF4767at 134.591 kb on + strand, within GFF4767at 134.592 kb on - strand, within GFF4767at 134.592 kb on - strand, within GFF4767at 134.592 kb on - strand, within GFF4767at 134.592 kb on - strand, within GFF4767at 134.592 kb on - strand, within GFF4767at 134.592 kb on - strand, within GFF4767at 134.592 kb on - strand, within GFF4767at 134.827 kb on - strand, within GFF4767at 134.827 kb on - strand, within GFF4767at 134.828 kb on + strand, within GFF4767at 134.828 kb on + strand, within GFF4767at 134.829 kb on - strand, within GFF4767at 134.829 kb on - strand, within GFF4767at 134.829 kb on - strand, within GFF4767at 134.829 kb on - strand, within GFF4767at 134.829 kb on - strand, within GFF4767at 134.829 kb on - strand, within GFF4767at 135.102 kb on + strandat 135.102 kb on + strandat 135.102 kb on + strandat 135.103 kb on - strandat 135.103 kb on - strandat 135.103 kb on - strandat 135.103 kb on - strandat 135.103 kb on - strandat 135.123 kb on - strandat 135.257 kb on + strandat 135.258 kb on - strandat 135.272 kb on + strandat 135.272 kb on + strandat 135.272 kb on + strandat 135.272 kb on + strandat 135.272 kb on + strandat 135.272 kb on + strandat 135.272 kb on + strandat 135.272 kb on + strandat 135.272 kb on + strandat 135.272 kb on + strandat 135.272 kb on + strandat 135.272 kb on + strandat 135.272 kb on + strandat 135.272 kb on + strandat 135.272 kb on + strandat 135.273 kb on - strandat 135.273 kb on - strandat 135.273 kb on - strandat 135.273 kb on - strandat 135.273 kb on - strandat 135.273 kb on - strandat 135.273 kb on - strandat 135.273 kb on - strandat 135.273 kb on - strandat 135.273 kb on - strandat 135.273 kb on - strandat 135.296 kb on + strandat 135.296 kb on + strandat 135.297 kb on - strandat 135.324 kb on + strand, within GFF4768at 135.336 kb on + strand, within GFF4768at 135.336 kb on + strand, within GFF4768at 135.336 kb on + strand, within GFF4768at 135.371 kb on + strand, within GFF4768at 135.372 kb on - strand, within GFF4768at 135.392 kb on + strand, within GFF4768at 135.392 kb on + strand, within GFF4768at 135.590 kb on + strand, within GFF4768at 135.590 kb on + strand, within GFF4768at 135.590 kb on + strand, within GFF4768at 135.590 kb on + strand, within GFF4768at 135.590 kb on + strand, within GFF4768at 135.590 kb on + strand, within GFF4768at 135.590 kb on + strand, within GFF4768at 135.591 kb on - strand, within GFF4768at 135.591 kb on - strand, within GFF4768at 135.591 kb on - strand, within GFF4768at 135.591 kb on - strand, within GFF4768at 135.591 kb on - strand, within GFF4768at 135.591 kb on - strand, within GFF4768at 135.591 kb on - strand, within GFF4768at 135.662 kb on + strand, within GFF4768at 135.662 kb on + strand, within GFF4768at 135.662 kb on + strand, within GFF4768at 135.662 kb on + strand, within GFF4768at 135.662 kb on + strand, within GFF4768at 135.662 kb on + strand, within GFF4768at 135.662 kb on + strand, within GFF4768at 135.663 kb on - strand, within GFF4768at 135.663 kb on - strand, within GFF4768at 135.663 kb on - strand, within GFF4768at 135.663 kb on - strand, within GFF4768at 135.712 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction Community=arabino-guar; Passage=4
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132,341 + GFF4765 0.21 -1.4
132,341 + GFF4765 0.21 -2.3
132,341 + GFF4765 0.21 +0.8
132,342 - GFF4765 0.21 +0.4
132,342 - GFF4765 0.21 +1.6
132,342 - GFF4765 0.21 -3.2
132,342 - GFF4765 0.21 -1.8
132,342 - GFF4765 0.21 -1.3
132,342 - GFF4765 0.21 -0.3
132,357 + GFF4765 0.23 -0.1
132,358 - GFF4765 0.23 -2.3
132,358 - GFF4765 0.23 +0.3
132,538 - GFF4765 0.53 -1.5
132,538 - GFF4765 0.53 -0.9
132,588 + GFF4765 0.61 -2.8
132,589 - GFF4765 0.61 -1.8
132,608 + GFF4765 0.64 -3.3
132,608 + GFF4765 0.64 +1.5
132,608 + GFF4765 0.64 -0.2
132,608 + GFF4765 0.64 +0.4
132,608 + GFF4765 0.64 -3.2
132,608 + GFF4765 0.64 -2.0
132,608 + GFF4765 0.64 -2.1
132,608 + GFF4765 0.64 +2.0
132,608 + GFF4765 0.64 -1.5
132,608 + GFF4765 0.64 +0.4
132,608 + GFF4765 0.64 -1.5
132,609 - GFF4765 0.64 -0.4
132,609 - GFF4765 0.64 -1.6
132,609 - GFF4765 0.64 +0.3
132,609 - GFF4765 0.64 -1.3
132,609 - GFF4765 0.64 -0.6
132,609 - GFF4765 0.64 -2.2
132,609 - GFF4765 0.64 -3.7
132,609 - GFF4765 0.64 +2.5
132,609 - GFF4765 0.64 -1.6
132,609 - GFF4765 0.64 -1.3
132,609 - GFF4765 0.64 -1.2
132,612 + GFF4765 0.65 +3.5
132,612 + GFF4765 0.65 -1.1
132,612 + GFF4765 0.65 -1.2
132,613 - GFF4765 0.65 +0.9
132,613 - GFF4765 0.65 -3.3
132,613 - GFF4765 0.65 -1.5
132,613 - GFF4765 0.65 +0.5
132,613 - GFF4765 0.65 -3.0
133,174 + GFF4766 0.72 +1.4
133,300 + -1.3
133,300 + +0.6
133,300 + -0.5
133,301 - +0.8
133,301 - +1.6
133,303 + +2.7
133,303 + +2.4
133,303 + -0.1
133,303 + -1.3
133,303 + +0.4
133,304 - +1.0
133,304 - +0.3
133,304 - -0.6
133,304 - -0.1
133,304 - -1.1
133,304 - -2.0
133,361 + +0.5
133,361 + -1.9
133,362 - -1.0
133,362 - -1.8
133,667 + GFF4767 0.19 -0.5
133,668 - GFF4767 0.19 -0.3
133,668 - GFF4767 0.19 -1.9
133,870 + GFF4767 0.31 +2.6
133,895 + GFF4767 0.32 +0.1
133,895 + GFF4767 0.32 -1.8
133,895 + GFF4767 0.32 -2.1
133,895 + GFF4767 0.32 -3.6
133,895 + GFF4767 0.32 -0.6
133,896 - GFF4767 0.32 -0.6
133,896 - GFF4767 0.32 -2.5
133,896 - GFF4767 0.32 +0.4
133,899 - GFF4767 0.32 -0.3
134,025 - GFF4767 0.40 +0.1
134,174 + GFF4767 0.48 +0.1
134,174 + GFF4767 0.48 -0.3
134,174 + GFF4767 0.48 -0.6
134,174 + GFF4767 0.48 +1.7
134,174 + GFF4767 0.48 -0.4
134,174 + GFF4767 0.48 +0.9
134,175 - GFF4767 0.48 +1.5
134,219 + GFF4767 0.51 -0.0
134,219 + GFF4767 0.51 -1.3
134,219 + GFF4767 0.51 -3.2
134,220 - GFF4767 0.51 -2.3
134,220 - GFF4767 0.51 -0.6
134,220 - GFF4767 0.51 +0.9
134,220 - GFF4767 0.51 +0.1
134,220 - GFF4767 0.51 -1.5
134,285 + GFF4767 0.54 -3.5
134,286 - GFF4767 0.54 -1.1
134,286 - GFF4767 0.54 -0.3
134,286 - GFF4767 0.54 +0.4
134,429 + GFF4767 0.63 -2.2
134,429 + GFF4767 0.63 -0.8
134,429 + GFF4767 0.63 -0.1
134,429 + GFF4767 0.63 -0.2
134,429 + GFF4767 0.63 -2.2
134,430 - GFF4767 0.63 +0.7
134,430 - GFF4767 0.63 -1.1
134,430 - GFF4767 0.63 +0.8
134,430 - GFF4767 0.63 +0.7
134,591 + GFF4767 0.72 +0.1
134,591 + GFF4767 0.72 -0.3
134,591 + GFF4767 0.72 -2.2
134,591 + GFF4767 0.72 +0.4
134,592 - GFF4767 0.72 -1.0
134,592 - GFF4767 0.72 -0.9
134,592 - GFF4767 0.72 +1.7
134,592 - GFF4767 0.72 -1.3
134,592 - GFF4767 0.72 +0.6
134,592 - GFF4767 0.72 -0.9
134,592 - GFF4767 0.72 -0.7
134,827 - GFF4767 0.85 -1.3
134,827 - GFF4767 0.85 -1.5
134,828 + GFF4767 0.85 +1.9
134,828 + GFF4767 0.85 +0.4
134,829 - GFF4767 0.85 +0.7
134,829 - GFF4767 0.85 -0.4
134,829 - GFF4767 0.85 +0.5
134,829 - GFF4767 0.85 +0.6
134,829 - GFF4767 0.85 -3.2
134,829 - GFF4767 0.85 -2.4
135,102 + +0.3
135,102 + +0.0
135,102 + +1.3
135,103 - -1.1
135,103 - -1.7
135,103 - +0.7
135,103 - +0.7
135,103 - -0.9
135,123 - +1.9
135,257 + -3.1
135,258 - -2.4
135,272 + -0.7
135,272 + +2.0
135,272 + -0.1
135,272 + -0.1
135,272 + -1.3
135,272 + -2.0
135,272 + -0.8
135,272 + -2.1
135,272 + -1.6
135,272 + -0.6
135,272 + -2.4
135,272 + -0.7
135,272 + +0.7
135,272 + -0.4
135,272 + -1.3
135,273 - -0.3
135,273 - -3.2
135,273 - -1.5
135,273 - -1.4
135,273 - +1.1
135,273 - -2.0
135,273 - +0.0
135,273 - -1.1
135,273 - -0.3
135,273 - -1.0
135,273 - +1.0
135,296 + -1.4
135,296 + -2.5
135,297 - -0.9
135,324 + GFF4768 0.11 -0.3
135,336 + GFF4768 0.14 -1.9
135,336 + GFF4768 0.14 -0.9
135,336 + GFF4768 0.14 -1.6
135,371 + GFF4768 0.21 -1.1
135,372 - GFF4768 0.22 -2.4
135,392 + GFF4768 0.26 +1.6
135,392 + GFF4768 0.26 +0.1
135,590 + GFF4768 0.70 -3.3
135,590 + GFF4768 0.70 -2.9
135,590 + GFF4768 0.70 -4.2
135,590 + GFF4768 0.70 -1.3
135,590 + GFF4768 0.70 -1.1
135,590 + GFF4768 0.70 -2.4
135,590 + GFF4768 0.70 -1.2
135,591 - GFF4768 0.70 -0.1
135,591 - GFF4768 0.70 -2.4
135,591 - GFF4768 0.70 -0.3
135,591 - GFF4768 0.70 -0.9
135,591 - GFF4768 0.70 +0.7
135,591 - GFF4768 0.70 -1.8
135,591 - GFF4768 0.70 -0.6
135,662 + GFF4768 0.86 -4.3
135,662 + GFF4768 0.86 -3.4
135,662 + GFF4768 0.86 -1.1
135,662 + GFF4768 0.86 +0.1
135,662 + GFF4768 0.86 -0.6
135,662 + GFF4768 0.86 -3.5
135,662 + GFF4768 0.86 -1.3
135,663 - GFF4768 0.86 -1.5
135,663 - GFF4768 0.86 -2.6
135,663 - GFF4768 0.86 -2.5
135,663 - GFF4768 0.86 +0.4
135,712 + -2.6

Or see this region's nucleotide sequence