Experiment: Community=arabino-guar; Passage=4
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt GFF4707 and GFF4708 overlap by 20 nucleotides GFF4708 and GFF4709 are separated by 56 nucleotides GFF4709 and GFF4710 are separated by 7 nucleotides GFF4710 and GFF4711 overlap by 1 nucleotides
GFF4707 - UDP-glucose 4-epimerase (EC 5.1.3.2), at 71,143 to 72,144
GFF4707
GFF4708 - Transcriptional regulator RSp1267, LysR family, at 72,125 to 73,036
GFF4708
GFF4709 - putative membrane protein, at 73,093 to 73,896
GFF4709
GFF4710 - MutT/Nudix family protein, at 73,904 to 74,380
GFF4710
GFF4711 - Transamidase GatB domain protein, at 74,380 to 74,829
GFF4711
Position (kb) 73
74 Strain fitness (log2 ratio) -5
-4
-3
-2
-1
0
1
2 at 72.142 kb on + strand at 72.143 kb on - strand at 72.143 kb on - strand at 72.143 kb on - strand at 72.143 kb on - strand at 72.143 kb on - strand at 72.333 kb on + strand, within GFF4708 at 73.192 kb on + strand, within GFF4709 at 73.192 kb on + strand, within GFF4709 at 73.192 kb on + strand, within GFF4709 at 73.193 kb on - strand, within GFF4709 at 73.193 kb on - strand, within GFF4709 at 73.193 kb on - strand, within GFF4709 at 73.193 kb on - strand, within GFF4709 at 73.193 kb on - strand, within GFF4709 at 73.265 kb on + strand, within GFF4709 at 73.265 kb on + strand, within GFF4709 at 73.266 kb on - strand, within GFF4709 at 73.266 kb on - strand, within GFF4709 at 73.266 kb on - strand, within GFF4709 at 73.388 kb on + strand, within GFF4709 at 73.388 kb on + strand, within GFF4709 at 73.388 kb on + strand, within GFF4709 at 73.389 kb on + strand, within GFF4709 at 73.389 kb on - strand, within GFF4709 at 73.483 kb on + strand, within GFF4709 at 73.483 kb on + strand, within GFF4709 at 73.483 kb on + strand, within GFF4709 at 73.483 kb on + strand, within GFF4709 at 73.484 kb on - strand, within GFF4709 at 73.618 kb on + strand, within GFF4709 at 73.618 kb on + strand, within GFF4709 at 73.619 kb on - strand, within GFF4709 at 73.870 kb on + strand at 73.870 kb on + strand at 73.870 kb on + strand at 73.870 kb on + strand at 73.870 kb on + strand at 73.870 kb on + strand at 73.870 kb on + strand at 73.870 kb on + strand at 73.870 kb on + strand at 73.870 kb on + strand at 73.870 kb on + strand at 73.870 kb on + strand at 73.871 kb on - strand at 73.871 kb on - strand at 73.871 kb on - strand at 73.871 kb on - strand at 73.871 kb on - strand at 73.871 kb on - strand at 73.871 kb on - strand at 73.871 kb on - strand at 73.871 kb on - strand at 73.871 kb on - strand at 73.871 kb on - strand at 73.871 kb on - strand at 73.871 kb on - strand at 74.047 kb on + strand, within GFF4710 at 74.048 kb on - strand, within GFF4710 at 74.564 kb on + strand, within GFF4711 at 74.564 kb on + strand, within GFF4711 at 74.564 kb on + strand, within GFF4711 at 74.564 kb on + strand, within GFF4711 at 74.564 kb on + strand, within GFF4711 at 74.564 kb on + strand, within GFF4711 at 74.565 kb on - strand, within GFF4711 at 74.565 kb on - strand, within GFF4711 at 74.565 kb on - strand, within GFF4711 at 74.565 kb on - strand, within GFF4711 at 74.565 kb on - strand, within GFF4711 at 74.565 kb on - strand, within GFF4711 at 74.565 kb on - strand, within GFF4711 at 74.565 kb on - strand, within GFF4711 at 74.565 kb on - strand, within GFF4711 at 74.565 kb on - strand, within GFF4711 at 74.565 kb on - strand, within GFF4711 at 74.565 kb on - strand, within GFF4711 at 74.565 kb on - strand, within GFF4711 at 74.565 kb on - strand, within GFF4711 at 74.565 kb on - strand, within GFF4711
Per-strain Table
Position Strand Gene LocusTag Fraction Community=arabino-guar; Passage=4 remove 72,142 + -0.5 72,143 - -1.5 72,143 - -0.3 72,143 - -0.4 72,143 - +0.1 72,143 - -2.7 72,333 + GFF4708 0.23 +1.0 73,192 + GFF4709 0.12 +0.9 73,192 + GFF4709 0.12 -3.8 73,192 + GFF4709 0.12 -1.2 73,193 - GFF4709 0.12 -0.5 73,193 - GFF4709 0.12 +1.7 73,193 - GFF4709 0.12 +0.3 73,193 - GFF4709 0.12 +1.3 73,193 - GFF4709 0.12 -2.4 73,265 + GFF4709 0.21 -3.1 73,265 + GFF4709 0.21 -2.0 73,266 - GFF4709 0.22 -0.1 73,266 - GFF4709 0.22 +1.8 73,266 - GFF4709 0.22 -1.3 73,388 + GFF4709 0.37 +0.6 73,388 + GFF4709 0.37 +0.1 73,388 + GFF4709 0.37 -1.6 73,389 + GFF4709 0.37 +1.2 73,389 - GFF4709 0.37 +0.0 73,483 + GFF4709 0.49 +1.6 73,483 + GFF4709 0.49 +0.5 73,483 + GFF4709 0.49 -1.3 73,483 + GFF4709 0.49 +1.8 73,484 - GFF4709 0.49 -4.2 73,618 + GFF4709 0.65 +1.4 73,618 + GFF4709 0.65 +2.7 73,619 - GFF4709 0.65 -2.3 73,870 + -5.2 73,870 + +1.3 73,870 + +0.8 73,870 + +0.1 73,870 + -0.7 73,870 + -1.3 73,870 + +1.3 73,870 + +0.5 73,870 + -1.0 73,870 + +0.4 73,870 + +1.4 73,870 + -1.4 73,871 - -2.2 73,871 - +1.1 73,871 - -0.0 73,871 - -0.1 73,871 - +0.8 73,871 - +1.0 73,871 - -1.5 73,871 - -0.3 73,871 - -2.1 73,871 - +0.6 73,871 - +0.5 73,871 - -1.5 73,871 - +2.7 74,047 + GFF4710 0.30 -0.4 74,048 - GFF4710 0.30 +0.9 74,564 + GFF4711 0.41 -2.6 74,564 + GFF4711 0.41 -0.1 74,564 + GFF4711 0.41 -1.9 74,564 + GFF4711 0.41 +1.8 74,564 + GFF4711 0.41 +0.4 74,564 + GFF4711 0.41 +1.7 74,565 - GFF4711 0.41 +1.1 74,565 - GFF4711 0.41 -0.3 74,565 - GFF4711 0.41 -2.6 74,565 - GFF4711 0.41 +0.4 74,565 - GFF4711 0.41 -2.8 74,565 - GFF4711 0.41 -2.3 74,565 - GFF4711 0.41 +2.3 74,565 - GFF4711 0.41 +1.0 74,565 - GFF4711 0.41 -0.4 74,565 - GFF4711 0.41 -1.5 74,565 - GFF4711 0.41 +1.0 74,565 - GFF4711 0.41 -1.9 74,565 - GFF4711 0.41 -1.4 74,565 - GFF4711 0.41 +0.3 74,565 - GFF4711 0.41 +0.2
Or see this region's nucleotide sequence