Strain Fitness in Variovorax sp. SCN45 around GFF4636

Experiment: Community=arabino-guar; Passage=4

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntGFF4634 and GFF4635 overlap by 4 nucleotidesGFF4635 and GFF4636 are separated by 25 nucleotidesGFF4636 and GFF4637 are separated by 40 nucleotides GFF4634 - Transketolase, C-terminal section (EC 2.2.1.1), at 274,820 to 275,737 GFF4634 GFF4635 - Transketolase, N-terminal section (EC 2.2.1.1), at 275,734 to 276,546 GFF4635 GFF4636 - dTDP-glucose 4,6-dehydratase (EC 4.2.1.46), at 276,572 to 277,567 GFF4636 GFF4637 - CDP-4-dehydro-6-deoxy-D-glucose 3-dehydratase (EC 4.2.1.-), at 277,608 to 278,939 GFF4637 Position (kb) 276 277 278Strain fitness (log2 ratio) -5 -4 -3 -2 -1 0 1 2 3at 275.613 kb on + strand, within GFF4634at 275.613 kb on + strand, within GFF4634at 275.613 kb on + strand, within GFF4634at 275.613 kb on + strand, within GFF4634at 275.613 kb on + strand, within GFF4634at 275.613 kb on + strand, within GFF4634at 275.614 kb on - strand, within GFF4634at 275.614 kb on - strand, within GFF4634at 275.614 kb on - strand, within GFF4634at 275.614 kb on - strand, within GFF4634at 275.614 kb on - strand, within GFF4634at 275.656 kb on - strandat 275.775 kb on - strandat 275.798 kb on + strandat 275.798 kb on + strandat 275.825 kb on + strand, within GFF4635at 275.825 kb on + strand, within GFF4635at 275.825 kb on + strand, within GFF4635at 275.825 kb on + strand, within GFF4635at 275.825 kb on + strand, within GFF4635at 275.825 kb on + strand, within GFF4635at 275.826 kb on - strand, within GFF4635at 275.826 kb on - strand, within GFF4635at 275.826 kb on - strand, within GFF4635at 275.826 kb on - strand, within GFF4635at 275.826 kb on - strand, within GFF4635at 275.826 kb on - strand, within GFF4635at 275.826 kb on - strand, within GFF4635at 275.826 kb on - strand, within GFF4635at 276.012 kb on + strand, within GFF4635at 276.137 kb on + strand, within GFF4635at 276.137 kb on + strand, within GFF4635at 276.137 kb on + strand, within GFF4635at 276.138 kb on - strand, within GFF4635at 276.138 kb on - strand, within GFF4635at 276.184 kb on + strand, within GFF4635at 276.184 kb on + strand, within GFF4635at 276.185 kb on - strand, within GFF4635at 276.185 kb on - strand, within GFF4635at 276.214 kb on - strand, within GFF4635at 276.214 kb on - strand, within GFF4635at 276.284 kb on + strand, within GFF4635at 276.284 kb on + strand, within GFF4635at 276.284 kb on + strand, within GFF4635at 276.284 kb on + strand, within GFF4635at 276.284 kb on + strand, within GFF4635at 276.284 kb on + strand, within GFF4635at 276.284 kb on + strand, within GFF4635at 276.284 kb on + strand, within GFF4635at 276.284 kb on + strand, within GFF4635at 276.284 kb on + strand, within GFF4635at 276.285 kb on - strand, within GFF4635at 276.285 kb on - strand, within GFF4635at 276.285 kb on - strand, within GFF4635at 276.285 kb on - strand, within GFF4635at 276.285 kb on - strand, within GFF4635at 276.335 kb on + strand, within GFF4635at 276.335 kb on + strand, within GFF4635at 276.335 kb on + strand, within GFF4635at 276.336 kb on - strand, within GFF4635at 276.336 kb on - strand, within GFF4635at 276.374 kb on + strand, within GFF4635at 276.374 kb on + strand, within GFF4635at 276.374 kb on + strand, within GFF4635at 276.410 kb on + strand, within GFF4635at 276.491 kb on + strandat 276.492 kb on - strandat 276.492 kb on - strandat 276.690 kb on + strand, within GFF4636at 276.690 kb on + strand, within GFF4636at 276.691 kb on - strand, within GFF4636at 276.691 kb on - strand, within GFF4636at 276.816 kb on + strand, within GFF4636at 276.817 kb on - strand, within GFF4636at 276.817 kb on - strand, within GFF4636at 276.817 kb on - strand, within GFF4636at 276.817 kb on - strand, within GFF4636at 276.817 kb on - strand, within GFF4636at 276.817 kb on - strand, within GFF4636at 276.817 kb on - strand, within GFF4636at 276.879 kb on + strand, within GFF4636at 276.879 kb on + strand, within GFF4636at 276.880 kb on - strand, within GFF4636at 276.886 kb on - strand, within GFF4636at 276.886 kb on - strand, within GFF4636at 276.960 kb on - strand, within GFF4636at 276.960 kb on - strand, within GFF4636at 276.960 kb on - strand, within GFF4636at 276.987 kb on + strand, within GFF4636at 276.987 kb on + strand, within GFF4636at 276.988 kb on - strand, within GFF4636at 276.988 kb on - strand, within GFF4636at 276.988 kb on - strand, within GFF4636at 277.080 kb on + strand, within GFF4636at 277.080 kb on + strand, within GFF4636at 277.081 kb on - strand, within GFF4636at 277.081 kb on - strand, within GFF4636at 277.152 kb on + strand, within GFF4636at 277.153 kb on - strand, within GFF4636at 277.232 kb on + strand, within GFF4636at 277.232 kb on + strand, within GFF4636at 277.232 kb on + strand, within GFF4636at 277.232 kb on + strand, within GFF4636at 277.233 kb on - strand, within GFF4636at 277.233 kb on - strand, within GFF4636at 277.233 kb on - strand, within GFF4636at 277.630 kb on + strandat 277.630 kb on + strandat 277.630 kb on + strandat 277.631 kb on - strandat 277.631 kb on - strandat 277.684 kb on + strandat 277.703 kb on + strandat 277.703 kb on + strandat 277.703 kb on + strandat 277.703 kb on + strandat 277.703 kb on + strandat 277.704 kb on - strandat 277.704 kb on - strandat 277.750 kb on + strand, within GFF4637at 277.750 kb on + strand, within GFF4637at 277.750 kb on + strand, within GFF4637at 277.750 kb on + strand, within GFF4637at 277.750 kb on + strand, within GFF4637at 277.750 kb on + strand, within GFF4637at 277.751 kb on - strand, within GFF4637at 277.751 kb on - strand, within GFF4637at 277.768 kb on + strand, within GFF4637at 277.768 kb on + strand, within GFF4637at 277.768 kb on + strand, within GFF4637at 277.768 kb on + strand, within GFF4637at 277.768 kb on + strand, within GFF4637at 277.768 kb on + strand, within GFF4637at 277.768 kb on + strand, within GFF4637at 277.768 kb on + strand, within GFF4637at 277.769 kb on - strand, within GFF4637at 277.769 kb on - strand, within GFF4637at 277.769 kb on - strand, within GFF4637at 277.769 kb on - strand, within GFF4637at 277.769 kb on - strand, within GFF4637at 277.769 kb on - strand, within GFF4637at 277.831 kb on + strand, within GFF4637at 277.831 kb on + strand, within GFF4637at 277.831 kb on + strand, within GFF4637at 277.831 kb on + strand, within GFF4637at 277.831 kb on + strand, within GFF4637at 277.831 kb on + strand, within GFF4637at 277.832 kb on - strand, within GFF4637at 277.832 kb on - strand, within GFF4637at 277.969 kb on + strand, within GFF4637at 277.970 kb on - strand, within GFF4637at 277.970 kb on - strand, within GFF4637at 278.045 kb on + strand, within GFF4637at 278.065 kb on + strand, within GFF4637at 278.065 kb on + strand, within GFF4637at 278.065 kb on + strand, within GFF4637at 278.066 kb on - strand, within GFF4637at 278.066 kb on - strand, within GFF4637at 278.066 kb on - strand, within GFF4637at 278.066 kb on - strand, within GFF4637at 278.066 kb on - strand, within GFF4637at 278.080 kb on + strand, within GFF4637at 278.080 kb on + strand, within GFF4637at 278.080 kb on + strand, within GFF4637at 278.080 kb on + strand, within GFF4637at 278.080 kb on + strand, within GFF4637at 278.080 kb on + strand, within GFF4637at 278.080 kb on + strand, within GFF4637at 278.081 kb on - strand, within GFF4637at 278.081 kb on - strand, within GFF4637at 278.081 kb on - strand, within GFF4637at 278.081 kb on - strand, within GFF4637at 278.086 kb on + strand, within GFF4637at 278.086 kb on + strand, within GFF4637at 278.086 kb on + strand, within GFF4637at 278.086 kb on + strand, within GFF4637at 278.086 kb on + strand, within GFF4637at 278.086 kb on + strand, within GFF4637at 278.086 kb on + strand, within GFF4637at 278.086 kb on + strand, within GFF4637at 278.086 kb on + strand, within GFF4637at 278.086 kb on + strand, within GFF4637at 278.086 kb on + strand, within GFF4637at 278.086 kb on + strand, within GFF4637at 278.087 kb on - strand, within GFF4637at 278.087 kb on - strand, within GFF4637at 278.087 kb on - strand, within GFF4637at 278.087 kb on - strand, within GFF4637at 278.087 kb on - strand, within GFF4637at 278.170 kb on + strand, within GFF4637at 278.170 kb on + strand, within GFF4637at 278.171 kb on - strand, within GFF4637at 278.171 kb on - strand, within GFF4637at 278.171 kb on - strand, within GFF4637at 278.171 kb on - strand, within GFF4637at 278.226 kb on - strand, within GFF4637at 278.275 kb on + strand, within GFF4637at 278.275 kb on + strand, within GFF4637at 278.276 kb on - strand, within GFF4637at 278.276 kb on - strand, within GFF4637at 278.276 kb on - strand, within GFF4637at 278.306 kb on + strand, within GFF4637at 278.306 kb on + strand, within GFF4637at 278.306 kb on + strand, within GFF4637at 278.307 kb on - strand, within GFF4637at 278.307 kb on - strand, within GFF4637at 278.307 kb on - strand, within GFF4637at 278.326 kb on + strand, within GFF4637at 278.410 kb on + strand, within GFF4637at 278.410 kb on + strand, within GFF4637at 278.410 kb on + strand, within GFF4637at 278.410 kb on + strand, within GFF4637at 278.410 kb on + strand, within GFF4637at 278.410 kb on + strand, within GFF4637at 278.411 kb on - strand, within GFF4637at 278.411 kb on - strand, within GFF4637at 278.411 kb on - strand, within GFF4637at 278.411 kb on - strand, within GFF4637at 278.411 kb on - strand, within GFF4637at 278.426 kb on + strand, within GFF4637at 278.427 kb on - strand, within GFF4637at 278.494 kb on + strand, within GFF4637at 278.494 kb on + strand, within GFF4637at 278.494 kb on + strand, within GFF4637at 278.494 kb on + strand, within GFF4637at 278.494 kb on + strand, within GFF4637at 278.494 kb on + strand, within GFF4637at 278.494 kb on + strand, within GFF4637at 278.494 kb on + strand, within GFF4637at 278.495 kb on - strand, within GFF4637at 278.495 kb on - strand, within GFF4637at 278.495 kb on - strand, within GFF4637at 278.495 kb on - strand, within GFF4637at 278.495 kb on - strand, within GFF4637at 278.495 kb on - strand, within GFF4637at 278.495 kb on - strand, within GFF4637at 278.495 kb on - strand, within GFF4637at 278.504 kb on + strand, within GFF4637at 278.504 kb on + strand, within GFF4637at 278.504 kb on + strand, within GFF4637at 278.504 kb on + strand, within GFF4637at 278.505 kb on - strand, within GFF4637at 278.505 kb on - strand, within GFF4637at 278.505 kb on - strand, within GFF4637at 278.505 kb on - strand, within GFF4637at 278.505 kb on - strand, within GFF4637at 278.505 kb on - strand, within GFF4637at 278.505 kb on - strand, within GFF4637at 278.505 kb on - strand, within GFF4637at 278.505 kb on - strand, within GFF4637

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Per-strain Table

Position Strand Gene LocusTag Fraction Community=arabino-guar; Passage=4
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275,613 + GFF4634 0.86 +1.1
275,613 + GFF4634 0.86 -0.9
275,613 + GFF4634 0.86 -1.0
275,613 + GFF4634 0.86 +2.1
275,613 + GFF4634 0.86 -3.3
275,613 + GFF4634 0.86 +0.1
275,614 - GFF4634 0.86 +0.2
275,614 - GFF4634 0.86 -1.2
275,614 - GFF4634 0.86 -1.8
275,614 - GFF4634 0.86 +0.6
275,614 - GFF4634 0.86 -4.9
275,656 - -0.1
275,775 - +0.5
275,798 + -1.6
275,798 + -0.1
275,825 + GFF4635 0.11 -0.2
275,825 + GFF4635 0.11 +1.7
275,825 + GFF4635 0.11 -2.5
275,825 + GFF4635 0.11 -2.5
275,825 + GFF4635 0.11 +0.8
275,825 + GFF4635 0.11 -0.4
275,826 - GFF4635 0.11 +1.1
275,826 - GFF4635 0.11 +2.2
275,826 - GFF4635 0.11 -0.8
275,826 - GFF4635 0.11 -1.8
275,826 - GFF4635 0.11 +2.1
275,826 - GFF4635 0.11 -1.9
275,826 - GFF4635 0.11 +0.3
275,826 - GFF4635 0.11 -2.6
276,012 + GFF4635 0.34 -0.9
276,137 + GFF4635 0.50 -1.3
276,137 + GFF4635 0.50 -0.6
276,137 + GFF4635 0.50 -0.5
276,138 - GFF4635 0.50 +0.5
276,138 - GFF4635 0.50 +1.4
276,184 + GFF4635 0.55 +1.1
276,184 + GFF4635 0.55 +0.5
276,185 - GFF4635 0.55 -2.5
276,185 - GFF4635 0.55 +1.0
276,214 - GFF4635 0.59 +1.0
276,214 - GFF4635 0.59 -1.5
276,284 + GFF4635 0.68 -4.4
276,284 + GFF4635 0.68 +2.5
276,284 + GFF4635 0.68 +1.7
276,284 + GFF4635 0.68 -2.1
276,284 + GFF4635 0.68 +0.0
276,284 + GFF4635 0.68 +1.5
276,284 + GFF4635 0.68 -0.5
276,284 + GFF4635 0.68 +0.5
276,284 + GFF4635 0.68 +0.8
276,284 + GFF4635 0.68 +1.2
276,285 - GFF4635 0.68 +0.6
276,285 - GFF4635 0.68 -1.1
276,285 - GFF4635 0.68 -0.9
276,285 - GFF4635 0.68 +1.2
276,285 - GFF4635 0.68 -3.4
276,335 + GFF4635 0.74 -0.3
276,335 + GFF4635 0.74 +0.8
276,335 + GFF4635 0.74 +0.6
276,336 - GFF4635 0.74 -2.4
276,336 - GFF4635 0.74 -1.1
276,374 + GFF4635 0.79 +1.4
276,374 + GFF4635 0.79 -4.6
276,374 + GFF4635 0.79 -2.1
276,410 + GFF4635 0.83 +0.3
276,491 + -2.9
276,492 - +0.5
276,492 - -3.0
276,690 + GFF4636 0.12 -2.8
276,690 + GFF4636 0.12 -0.5
276,691 - GFF4636 0.12 -1.5
276,691 - GFF4636 0.12 +1.7
276,816 + GFF4636 0.24 -1.8
276,817 - GFF4636 0.25 -1.3
276,817 - GFF4636 0.25 -1.1
276,817 - GFF4636 0.25 +0.9
276,817 - GFF4636 0.25 -0.0
276,817 - GFF4636 0.25 +2.9
276,817 - GFF4636 0.25 -0.6
276,817 - GFF4636 0.25 -2.0
276,879 + GFF4636 0.31 -0.5
276,879 + GFF4636 0.31 -1.6
276,880 - GFF4636 0.31 -1.1
276,886 - GFF4636 0.32 -0.3
276,886 - GFF4636 0.32 -0.9
276,960 - GFF4636 0.39 +0.5
276,960 - GFF4636 0.39 -1.8
276,960 - GFF4636 0.39 -0.3
276,987 + GFF4636 0.42 -2.4
276,987 + GFF4636 0.42 +1.2
276,988 - GFF4636 0.42 -0.5
276,988 - GFF4636 0.42 -0.7
276,988 - GFF4636 0.42 +0.9
277,080 + GFF4636 0.51 +1.1
277,080 + GFF4636 0.51 +0.1
277,081 - GFF4636 0.51 -1.1
277,081 - GFF4636 0.51 -4.2
277,152 + GFF4636 0.58 -1.2
277,153 - GFF4636 0.58 -2.6
277,232 + GFF4636 0.66 +0.4
277,232 + GFF4636 0.66 +2.5
277,232 + GFF4636 0.66 -1.9
277,232 + GFF4636 0.66 -3.8
277,233 - GFF4636 0.66 +0.1
277,233 - GFF4636 0.66 -3.6
277,233 - GFF4636 0.66 +0.1
277,630 + -1.1
277,630 + +1.3
277,630 + +0.8
277,631 - +1.0
277,631 - +0.5
277,684 + -2.1
277,703 + -1.1
277,703 + -2.6
277,703 + -0.8
277,703 + -0.2
277,703 + -3.7
277,704 - -3.1
277,704 - -1.4
277,750 + GFF4637 0.11 -2.4
277,750 + GFF4637 0.11 -0.2
277,750 + GFF4637 0.11 -1.2
277,750 + GFF4637 0.11 -2.6
277,750 + GFF4637 0.11 +1.1
277,750 + GFF4637 0.11 +0.1
277,751 - GFF4637 0.11 -0.2
277,751 - GFF4637 0.11 +0.6
277,768 + GFF4637 0.12 +0.7
277,768 + GFF4637 0.12 -2.5
277,768 + GFF4637 0.12 -3.2
277,768 + GFF4637 0.12 -1.5
277,768 + GFF4637 0.12 -2.8
277,768 + GFF4637 0.12 -2.8
277,768 + GFF4637 0.12 -0.9
277,768 + GFF4637 0.12 -0.7
277,769 - GFF4637 0.12 +1.6
277,769 - GFF4637 0.12 +1.9
277,769 - GFF4637 0.12 -1.8
277,769 - GFF4637 0.12 +2.0
277,769 - GFF4637 0.12 +1.8
277,769 - GFF4637 0.12 -1.1
277,831 + GFF4637 0.17 +1.8
277,831 + GFF4637 0.17 +1.5
277,831 + GFF4637 0.17 -1.5
277,831 + GFF4637 0.17 -0.3
277,831 + GFF4637 0.17 -2.8
277,831 + GFF4637 0.17 -1.6
277,832 - GFF4637 0.17 +3.4
277,832 - GFF4637 0.17 +1.5
277,969 + GFF4637 0.27 +1.7
277,970 - GFF4637 0.27 -0.7
277,970 - GFF4637 0.27 -4.2
278,045 + GFF4637 0.33 +0.3
278,065 + GFF4637 0.34 -1.7
278,065 + GFF4637 0.34 +1.1
278,065 + GFF4637 0.34 -0.1
278,066 - GFF4637 0.34 -1.6
278,066 - GFF4637 0.34 -1.2
278,066 - GFF4637 0.34 +1.5
278,066 - GFF4637 0.34 +2.4
278,066 - GFF4637 0.34 +0.2
278,080 + GFF4637 0.35 -1.5
278,080 + GFF4637 0.35 -2.1
278,080 + GFF4637 0.35 +0.1
278,080 + GFF4637 0.35 -1.1
278,080 + GFF4637 0.35 +2.7
278,080 + GFF4637 0.35 +0.8
278,080 + GFF4637 0.35 -1.5
278,081 - GFF4637 0.36 -2.7
278,081 - GFF4637 0.36 +0.2
278,081 - GFF4637 0.36 -4.1
278,081 - GFF4637 0.36 -1.6
278,086 + GFF4637 0.36 +0.2
278,086 + GFF4637 0.36 -3.3
278,086 + GFF4637 0.36 -1.2
278,086 + GFF4637 0.36 -3.3
278,086 + GFF4637 0.36 -1.1
278,086 + GFF4637 0.36 -2.0
278,086 + GFF4637 0.36 -0.5
278,086 + GFF4637 0.36 -0.2
278,086 + GFF4637 0.36 +0.5
278,086 + GFF4637 0.36 -1.8
278,086 + GFF4637 0.36 -0.9
278,086 + GFF4637 0.36 +1.3
278,087 - GFF4637 0.36 -3.1
278,087 - GFF4637 0.36 -1.1
278,087 - GFF4637 0.36 +1.4
278,087 - GFF4637 0.36 -1.3
278,087 - GFF4637 0.36 -2.1
278,170 + GFF4637 0.42 -1.1
278,170 + GFF4637 0.42 +0.1
278,171 - GFF4637 0.42 +0.5
278,171 - GFF4637 0.42 -3.8
278,171 - GFF4637 0.42 -1.4
278,171 - GFF4637 0.42 -1.2
278,226 - GFF4637 0.46 -2.7
278,275 + GFF4637 0.50 -0.7
278,275 + GFF4637 0.50 -2.1
278,276 - GFF4637 0.50 +0.2
278,276 - GFF4637 0.50 +0.1
278,276 - GFF4637 0.50 +2.2
278,306 + GFF4637 0.52 -2.7
278,306 + GFF4637 0.52 -1.2
278,306 + GFF4637 0.52 -2.2
278,307 - GFF4637 0.52 +1.1
278,307 - GFF4637 0.52 -1.8
278,307 - GFF4637 0.52 -0.2
278,326 + GFF4637 0.54 +2.0
278,410 + GFF4637 0.60 +1.2
278,410 + GFF4637 0.60 -1.4
278,410 + GFF4637 0.60 +0.7
278,410 + GFF4637 0.60 -2.2
278,410 + GFF4637 0.60 +0.6
278,410 + GFF4637 0.60 -2.4
278,411 - GFF4637 0.60 -2.8
278,411 - GFF4637 0.60 +0.6
278,411 - GFF4637 0.60 +1.4
278,411 - GFF4637 0.60 -3.5
278,411 - GFF4637 0.60 -2.1
278,426 + GFF4637 0.61 -2.8
278,427 - GFF4637 0.61 -3.4
278,494 + GFF4637 0.67 -0.7
278,494 + GFF4637 0.67 -0.1
278,494 + GFF4637 0.67 -4.1
278,494 + GFF4637 0.67 -0.2
278,494 + GFF4637 0.67 +0.8
278,494 + GFF4637 0.67 +2.3
278,494 + GFF4637 0.67 -0.7
278,494 + GFF4637 0.67 +0.0
278,495 - GFF4637 0.67 +3.3
278,495 - GFF4637 0.67 -3.2
278,495 - GFF4637 0.67 -4.5
278,495 - GFF4637 0.67 -3.1
278,495 - GFF4637 0.67 -1.1
278,495 - GFF4637 0.67 -4.9
278,495 - GFF4637 0.67 -2.5
278,495 - GFF4637 0.67 -1.4
278,504 + GFF4637 0.67 -0.2
278,504 + GFF4637 0.67 -0.5
278,504 + GFF4637 0.67 -3.0
278,504 + GFF4637 0.67 -1.6
278,505 - GFF4637 0.67 +0.3
278,505 - GFF4637 0.67 -3.8
278,505 - GFF4637 0.67 -1.4
278,505 - GFF4637 0.67 -2.1
278,505 - GFF4637 0.67 +0.1
278,505 - GFF4637 0.67 +2.0
278,505 - GFF4637 0.67 +2.1
278,505 - GFF4637 0.67 -1.5
278,505 - GFF4637 0.67 -1.2

Or see this region's nucleotide sequence