Experiment: Community=arabino-guar; Passage=4
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt GFF4490 and GFF4491 overlap by 26 nucleotides GFF4491 and GFF4492 overlap by 4 nucleotides GFF4492 and GFF4493 overlap by 4 nucleotides GFF4493 and GFF4494 are separated by 80 nucleotides
GFF4490 - Site-specific tyrosine recombinase XerC, at 135,454 to 136,470
GFF4490
GFF4491 - no description, at 136,445 to 137,080
GFF4491
GFF4492 - Protein of unknown function DUF484, at 137,077 to 137,781
GFF4492
GFF4493 - Diaminopimelate epimerase (EC 5.1.1.7), at 137,778 to 138,662
GFF4493
GFF4494 - hypothetical protein, at 138,743 to 139,057
GFF4494
Position (kb) 137
138 Strain fitness (log2 ratio) -4
-3
-2
-1
0
1
2
3
4 at 136.172 kb on + strand, within GFF4490 at 136.172 kb on + strand, within GFF4490 at 136.172 kb on + strand, within GFF4490 at 136.172 kb on + strand, within GFF4490 at 136.173 kb on - strand, within GFF4490 at 136.334 kb on + strand, within GFF4490 at 136.334 kb on + strand, within GFF4490 at 136.334 kb on + strand, within GFF4490 at 136.554 kb on + strand, within GFF4491 at 136.554 kb on + strand, within GFF4491 at 136.555 kb on - strand, within GFF4491 at 136.555 kb on - strand, within GFF4491 at 136.555 kb on - strand, within GFF4491 at 136.737 kb on + strand, within GFF4491 at 136.737 kb on + strand, within GFF4491 at 136.737 kb on + strand, within GFF4491 at 136.737 kb on + strand, within GFF4491 at 136.902 kb on + strand, within GFF4491 at 136.902 kb on + strand, within GFF4491 at 136.902 kb on + strand, within GFF4491 at 136.902 kb on + strand, within GFF4491 at 136.903 kb on - strand, within GFF4491 at 136.903 kb on - strand, within GFF4491 at 136.903 kb on - strand, within GFF4491 at 137.303 kb on + strand, within GFF4492 at 137.304 kb on - strand, within GFF4492 at 137.360 kb on + strand, within GFF4492 at 137.360 kb on + strand, within GFF4492 at 137.360 kb on + strand, within GFF4492 at 137.360 kb on + strand, within GFF4492 at 137.361 kb on - strand, within GFF4492 at 137.361 kb on - strand, within GFF4492 at 137.361 kb on - strand, within GFF4492 at 137.361 kb on - strand, within GFF4492 at 137.361 kb on - strand, within GFF4492 at 137.361 kb on - strand, within GFF4492 at 137.361 kb on - strand, within GFF4492 at 137.376 kb on - strand, within GFF4492 at 137.708 kb on + strand, within GFF4492 at 137.708 kb on + strand, within GFF4492 at 137.708 kb on + strand, within GFF4492 at 137.708 kb on + strand, within GFF4492 at 137.708 kb on + strand, within GFF4492 at 137.708 kb on + strand, within GFF4492 at 137.708 kb on + strand, within GFF4492 at 137.708 kb on + strand, within GFF4492 at 137.709 kb on - strand, within GFF4492 at 137.709 kb on - strand, within GFF4492 at 137.709 kb on - strand, within GFF4492 at 137.709 kb on - strand, within GFF4492 at 137.709 kb on - strand, within GFF4492 at 137.709 kb on - strand, within GFF4492 at 137.709 kb on - strand, within GFF4492 at 137.709 kb on - strand, within GFF4492 at 137.709 kb on - strand, within GFF4492 at 137.709 kb on - strand, within GFF4492 at 137.709 kb on - strand, within GFF4492 at 137.803 kb on - strand at 137.803 kb on - strand at 138.672 kb on - strand at 138.672 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction Community=arabino-guar; Passage=4 remove 136,172 + GFF4490 0.71 -2.3 136,172 + GFF4490 0.71 -4.6 136,172 + GFF4490 0.71 -0.2 136,172 + GFF4490 0.71 -2.6 136,173 - GFF4490 0.71 -0.2 136,334 + GFF4490 0.87 -2.1 136,334 + GFF4490 0.87 -0.2 136,334 + GFF4490 0.87 +1.1 136,554 + GFF4491 0.17 -0.5 136,554 + GFF4491 0.17 -1.4 136,555 - GFF4491 0.17 +1.5 136,555 - GFF4491 0.17 +1.1 136,555 - GFF4491 0.17 +4.0 136,737 + GFF4491 0.46 -2.3 136,737 + GFF4491 0.46 +0.1 136,737 + GFF4491 0.46 -3.3 136,737 + GFF4491 0.46 -0.7 136,902 + GFF4491 0.72 +0.2 136,902 + GFF4491 0.72 +0.2 136,902 + GFF4491 0.72 -1.5 136,902 + GFF4491 0.72 -1.6 136,903 - GFF4491 0.72 +1.1 136,903 - GFF4491 0.72 +0.3 136,903 - GFF4491 0.72 +1.3 137,303 + GFF4492 0.32 -1.2 137,304 - GFF4492 0.32 -3.1 137,360 + GFF4492 0.40 -0.2 137,360 + GFF4492 0.40 -3.3 137,360 + GFF4492 0.40 -2.1 137,360 + GFF4492 0.40 -2.1 137,361 - GFF4492 0.40 -1.4 137,361 - GFF4492 0.40 +0.5 137,361 - GFF4492 0.40 -0.2 137,361 - GFF4492 0.40 -1.4 137,361 - GFF4492 0.40 +0.5 137,361 - GFF4492 0.40 -0.2 137,361 - GFF4492 0.40 -1.5 137,376 - GFF4492 0.42 -2.2 137,708 + GFF4492 0.90 -0.3 137,708 + GFF4492 0.90 -2.2 137,708 + GFF4492 0.90 -0.7 137,708 + GFF4492 0.90 +0.7 137,708 + GFF4492 0.90 +1.1 137,708 + GFF4492 0.90 -2.0 137,708 + GFF4492 0.90 -0.7 137,708 + GFF4492 0.90 -0.9 137,709 - GFF4492 0.90 -2.4 137,709 - GFF4492 0.90 -2.9 137,709 - GFF4492 0.90 -2.1 137,709 - GFF4492 0.90 -3.4 137,709 - GFF4492 0.90 -0.9 137,709 - GFF4492 0.90 -4.0 137,709 - GFF4492 0.90 -1.5 137,709 - GFF4492 0.90 -2.8 137,709 - GFF4492 0.90 +0.5 137,709 - GFF4492 0.90 -1.2 137,709 - GFF4492 0.90 -0.9 137,803 - -3.1 137,803 - -4.7 138,672 - -0.7 138,672 - +1.1
Or see this region's nucleotide sequence