Experiment: Community=arabino-guar; Passage=4
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt GFF4428 and GFF4429 are separated by 117 nucleotides GFF4429 and GFF4430 overlap by 4 nucleotides GFF4430 and GFF4431 are separated by 21 nucleotides
GFF4428 - Signal recognition particle protein Ffh, at 65,911 to 67,299
GFF4428
GFF4429 - Inner membrane protein YpjD, at 67,417 to 68,232
GFF4429
GFF4430 - hypothetical protein, at 68,229 to 68,492
GFF4430
GFF4431 - Multi-sensor signal transduction histidine kinase, at 68,514 to 70,211
GFF4431
Position (kb) 67
68
69 Strain fitness (log2 ratio) -4
-3
-2
-1
0
1
2
3
4 at 67.365 kb on - strand at 67.404 kb on + strand at 67.405 kb on - strand at 67.424 kb on + strand at 67.424 kb on + strand at 67.424 kb on + strand at 67.425 kb on - strand at 67.425 kb on - strand at 67.425 kb on - strand at 67.477 kb on + strand at 67.478 kb on - strand at 67.478 kb on - strand at 67.539 kb on + strand, within GFF4429 at 67.539 kb on + strand, within GFF4429 at 67.539 kb on + strand, within GFF4429 at 67.539 kb on + strand, within GFF4429 at 67.540 kb on - strand, within GFF4429 at 67.651 kb on + strand, within GFF4429 at 67.651 kb on + strand, within GFF4429 at 67.651 kb on + strand, within GFF4429 at 67.651 kb on + strand, within GFF4429 at 67.651 kb on + strand, within GFF4429 at 67.651 kb on + strand, within GFF4429 at 67.651 kb on + strand, within GFF4429 at 67.651 kb on + strand, within GFF4429 at 67.651 kb on + strand, within GFF4429 at 67.651 kb on + strand, within GFF4429 at 67.652 kb on - strand, within GFF4429 at 67.652 kb on - strand, within GFF4429 at 67.652 kb on - strand, within GFF4429 at 67.652 kb on - strand, within GFF4429 at 67.652 kb on - strand, within GFF4429 at 67.672 kb on + strand, within GFF4429 at 67.672 kb on + strand, within GFF4429 at 67.672 kb on + strand, within GFF4429 at 67.672 kb on + strand, within GFF4429 at 67.672 kb on + strand, within GFF4429 at 67.672 kb on + strand, within GFF4429 at 67.672 kb on + strand, within GFF4429 at 67.672 kb on + strand, within GFF4429 at 67.672 kb on + strand, within GFF4429 at 67.673 kb on - strand, within GFF4429 at 67.673 kb on - strand, within GFF4429 at 67.673 kb on - strand, within GFF4429 at 67.673 kb on - strand, within GFF4429 at 67.673 kb on - strand, within GFF4429 at 67.673 kb on - strand, within GFF4429 at 67.673 kb on - strand, within GFF4429 at 67.673 kb on - strand, within GFF4429 at 67.673 kb on - strand, within GFF4429 at 67.673 kb on - strand, within GFF4429 at 67.688 kb on + strand, within GFF4429 at 67.688 kb on + strand, within GFF4429 at 67.689 kb on - strand, within GFF4429 at 67.689 kb on - strand, within GFF4429 at 67.689 kb on - strand, within GFF4429 at 67.793 kb on + strand, within GFF4429 at 67.813 kb on + strand, within GFF4429 at 67.813 kb on + strand, within GFF4429 at 67.813 kb on + strand, within GFF4429 at 67.813 kb on + strand, within GFF4429 at 67.813 kb on + strand, within GFF4429 at 67.813 kb on + strand, within GFF4429 at 67.813 kb on + strand, within GFF4429 at 67.814 kb on - strand, within GFF4429 at 67.814 kb on - strand, within GFF4429 at 67.814 kb on - strand, within GFF4429 at 67.835 kb on + strand, within GFF4429 at 67.835 kb on + strand, within GFF4429 at 67.835 kb on + strand, within GFF4429 at 67.836 kb on - strand, within GFF4429 at 67.836 kb on - strand, within GFF4429 at 67.836 kb on - strand, within GFF4429 at 67.836 kb on - strand, within GFF4429 at 67.836 kb on - strand, within GFF4429 at 67.935 kb on + strand, within GFF4429 at 67.935 kb on + strand, within GFF4429 at 67.935 kb on + strand, within GFF4429 at 67.935 kb on + strand, within GFF4429 at 67.935 kb on + strand, within GFF4429 at 67.935 kb on + strand, within GFF4429 at 67.936 kb on - strand, within GFF4429 at 67.936 kb on - strand, within GFF4429 at 67.936 kb on - strand, within GFF4429 at 67.936 kb on - strand, within GFF4429 at 67.936 kb on - strand, within GFF4429 at 67.936 kb on - strand, within GFF4429 at 67.936 kb on - strand, within GFF4429 at 67.936 kb on - strand, within GFF4429 at 68.014 kb on + strand, within GFF4429 at 68.014 kb on + strand, within GFF4429 at 68.015 kb on - strand, within GFF4429 at 68.015 kb on - strand, within GFF4429 at 68.015 kb on - strand, within GFF4429 at 68.149 kb on + strand, within GFF4429 at 68.149 kb on + strand, within GFF4429 at 68.149 kb on + strand, within GFF4429 at 68.149 kb on + strand, within GFF4429 at 68.149 kb on + strand, within GFF4429 at 68.149 kb on + strand, within GFF4429 at 68.149 kb on + strand, within GFF4429 at 68.150 kb on - strand, within GFF4429 at 68.150 kb on - strand, within GFF4429 at 68.150 kb on - strand, within GFF4429 at 68.179 kb on + strand at 68.179 kb on + strand at 68.179 kb on + strand at 68.179 kb on + strand at 68.179 kb on + strand at 68.179 kb on + strand at 68.179 kb on + strand at 68.179 kb on + strand at 68.179 kb on + strand at 68.179 kb on + strand at 68.180 kb on - strand at 68.180 kb on - strand at 68.180 kb on - strand at 68.180 kb on - strand at 68.180 kb on - strand at 68.228 kb on + strand at 68.228 kb on + strand at 68.228 kb on + strand at 68.228 kb on + strand at 68.228 kb on + strand at 68.228 kb on + strand at 68.228 kb on + strand at 68.228 kb on + strand at 68.228 kb on + strand at 68.228 kb on + strand at 68.229 kb on - strand at 68.229 kb on - strand at 68.229 kb on - strand at 68.235 kb on + strand at 68.235 kb on + strand at 68.235 kb on + strand at 68.235 kb on + strand at 68.235 kb on + strand at 68.235 kb on + strand at 68.235 kb on + strand at 68.235 kb on + strand at 68.235 kb on + strand at 68.235 kb on + strand at 68.235 kb on + strand at 68.235 kb on + strand at 68.235 kb on + strand at 68.235 kb on + strand at 68.235 kb on + strand at 68.235 kb on + strand at 68.235 kb on + strand at 68.236 kb on - strand at 68.236 kb on - strand at 68.236 kb on - strand at 68.236 kb on - strand at 68.236 kb on - strand at 68.236 kb on - strand at 68.236 kb on - strand at 68.236 kb on - strand at 68.236 kb on - strand at 68.236 kb on - strand at 68.236 kb on - strand at 68.236 kb on - strand at 68.236 kb on - strand at 68.236 kb on - strand at 68.236 kb on - strand at 68.236 kb on - strand at 68.236 kb on - strand at 68.236 kb on - strand at 68.236 kb on - strand at 68.236 kb on - strand at 68.448 kb on + strand, within GFF4430 at 68.448 kb on + strand, within GFF4430 at 68.448 kb on + strand, within GFF4430 at 68.448 kb on + strand, within GFF4430 at 68.449 kb on - strand, within GFF4430 at 68.449 kb on - strand, within GFF4430 at 68.449 kb on - strand, within GFF4430 at 68.449 kb on - strand, within GFF4430 at 68.449 kb on - strand, within GFF4430 at 68.449 kb on - strand, within GFF4430 at 68.449 kb on - strand, within GFF4430 at 68.449 kb on - strand, within GFF4430 at 68.449 kb on - strand, within GFF4430 at 68.724 kb on + strand, within GFF4431 at 68.724 kb on + strand, within GFF4431 at 68.724 kb on + strand, within GFF4431 at 68.725 kb on - strand, within GFF4431 at 68.725 kb on - strand, within GFF4431 at 68.725 kb on - strand, within GFF4431 at 68.725 kb on - strand, within GFF4431 at 68.754 kb on + strand, within GFF4431 at 68.754 kb on + strand, within GFF4431 at 68.755 kb on - strand, within GFF4431 at 68.755 kb on - strand, within GFF4431 at 68.755 kb on - strand, within GFF4431 at 68.755 kb on - strand, within GFF4431 at 68.755 kb on - strand, within GFF4431 at 68.755 kb on - strand, within GFF4431 at 68.755 kb on - strand, within GFF4431 at 68.755 kb on - strand, within GFF4431 at 68.868 kb on + strand, within GFF4431 at 68.868 kb on + strand, within GFF4431 at 68.868 kb on + strand, within GFF4431 at 68.868 kb on + strand, within GFF4431 at 68.868 kb on + strand, within GFF4431 at 68.868 kb on + strand, within GFF4431 at 68.868 kb on + strand, within GFF4431 at 68.868 kb on + strand, within GFF4431 at 68.868 kb on + strand, within GFF4431 at 68.868 kb on + strand, within GFF4431 at 68.868 kb on + strand, within GFF4431 at 68.868 kb on + strand, within GFF4431 at 68.868 kb on + strand, within GFF4431 at 68.868 kb on + strand, within GFF4431 at 68.868 kb on + strand, within GFF4431 at 68.868 kb on + strand, within GFF4431 at 68.869 kb on - strand, within GFF4431 at 68.869 kb on - strand, within GFF4431 at 68.869 kb on - strand, within GFF4431 at 68.869 kb on - strand, within GFF4431 at 68.869 kb on - strand, within GFF4431 at 68.869 kb on - strand, within GFF4431 at 68.869 kb on - strand, within GFF4431 at 68.869 kb on - strand, within GFF4431 at 68.869 kb on - strand, within GFF4431 at 68.869 kb on - strand, within GFF4431 at 69.036 kb on - strand, within GFF4431
Per-strain Table
Position Strand Gene LocusTag Fraction Community=arabino-guar; Passage=4 remove 67,365 - +0.3 67,404 + -1.8 67,405 - +0.6 67,424 + +1.1 67,424 + -2.5 67,424 + -1.2 67,425 - -1.6 67,425 - -2.5 67,425 - +0.1 67,477 + +0.2 67,478 - +0.2 67,478 - -1.5 67,539 + GFF4429 0.15 -0.9 67,539 + GFF4429 0.15 -0.9 67,539 + GFF4429 0.15 -1.2 67,539 + GFF4429 0.15 +3.0 67,540 - GFF4429 0.15 -1.5 67,651 + GFF4429 0.29 -0.7 67,651 + GFF4429 0.29 -1.1 67,651 + GFF4429 0.29 -0.9 67,651 + GFF4429 0.29 +0.3 67,651 + GFF4429 0.29 +1.1 67,651 + GFF4429 0.29 +1.7 67,651 + GFF4429 0.29 +1.6 67,651 + GFF4429 0.29 +0.9 67,651 + GFF4429 0.29 +0.8 67,651 + GFF4429 0.29 +2.2 67,652 - GFF4429 0.29 -1.2 67,652 - GFF4429 0.29 +1.3 67,652 - GFF4429 0.29 +0.4 67,652 - GFF4429 0.29 +1.8 67,652 - GFF4429 0.29 +0.5 67,672 + GFF4429 0.31 -1.1 67,672 + GFF4429 0.31 +0.9 67,672 + GFF4429 0.31 -0.2 67,672 + GFF4429 0.31 -1.2 67,672 + GFF4429 0.31 -1.8 67,672 + GFF4429 0.31 -0.1 67,672 + GFF4429 0.31 -1.9 67,672 + GFF4429 0.31 -2.6 67,672 + GFF4429 0.31 +0.5 67,673 - GFF4429 0.31 -1.5 67,673 - GFF4429 0.31 +0.4 67,673 - GFF4429 0.31 +0.3 67,673 - GFF4429 0.31 -0.6 67,673 - GFF4429 0.31 -1.3 67,673 - GFF4429 0.31 -3.8 67,673 - GFF4429 0.31 -0.0 67,673 - GFF4429 0.31 -1.2 67,673 - GFF4429 0.31 +0.3 67,673 - GFF4429 0.31 +0.7 67,688 + GFF4429 0.33 +1.1 67,688 + GFF4429 0.33 -1.5 67,689 - GFF4429 0.33 +2.5 67,689 - GFF4429 0.33 -0.2 67,689 - GFF4429 0.33 +0.5 67,793 + GFF4429 0.46 -2.0 67,813 + GFF4429 0.49 +1.2 67,813 + GFF4429 0.49 -0.8 67,813 + GFF4429 0.49 -2.7 67,813 + GFF4429 0.49 -1.4 67,813 + GFF4429 0.49 -1.2 67,813 + GFF4429 0.49 -0.5 67,813 + GFF4429 0.49 +0.1 67,814 - GFF4429 0.49 -0.5 67,814 - GFF4429 0.49 +2.1 67,814 - GFF4429 0.49 -0.2 67,835 + GFF4429 0.51 -0.1 67,835 + GFF4429 0.51 -2.1 67,835 + GFF4429 0.51 +0.4 67,836 - GFF4429 0.51 +1.3 67,836 - GFF4429 0.51 +1.8 67,836 - GFF4429 0.51 -0.2 67,836 - GFF4429 0.51 +1.4 67,836 - GFF4429 0.51 -2.5 67,935 + GFF4429 0.63 +0.1 67,935 + GFF4429 0.63 -0.7 67,935 + GFF4429 0.63 -1.1 67,935 + GFF4429 0.63 +0.1 67,935 + GFF4429 0.63 -0.8 67,935 + GFF4429 0.63 +0.2 67,936 - GFF4429 0.64 +1.1 67,936 - GFF4429 0.64 -3.6 67,936 - GFF4429 0.64 -1.9 67,936 - GFF4429 0.64 -2.1 67,936 - GFF4429 0.64 +0.6 67,936 - GFF4429 0.64 -0.1 67,936 - GFF4429 0.64 -2.9 67,936 - GFF4429 0.64 -1.8 68,014 + GFF4429 0.73 -1.6 68,014 + GFF4429 0.73 +1.0 68,015 - GFF4429 0.73 +3.9 68,015 - GFF4429 0.73 -1.8 68,015 - GFF4429 0.73 +4.6 68,149 + GFF4429 0.90 -3.4 68,149 + GFF4429 0.90 -0.9 68,149 + GFF4429 0.90 +1.1 68,149 + GFF4429 0.90 +0.5 68,149 + GFF4429 0.90 +1.8 68,149 + GFF4429 0.90 -1.9 68,149 + GFF4429 0.90 +0.5 68,150 - GFF4429 0.90 +1.7 68,150 - GFF4429 0.90 -0.9 68,150 - GFF4429 0.90 -0.4 68,179 + -0.4 68,179 + -1.0 68,179 + -0.2 68,179 + -0.9 68,179 + +0.5 68,179 + -0.5 68,179 + -0.2 68,179 + +2.4 68,179 + -1.3 68,179 + -0.2 68,180 - -0.0 68,180 - +0.1 68,180 - -0.9 68,180 - -1.3 68,180 - +0.9 68,228 + -2.4 68,228 + -0.7 68,228 + +1.9 68,228 + +1.3 68,228 + +1.9 68,228 + -0.3 68,228 + +0.8 68,228 + -1.0 68,228 + -0.2 68,228 + -0.7 68,229 - -1.0 68,229 - -2.4 68,229 - +1.3 68,235 + -1.1 68,235 + +1.4 68,235 + -1.5 68,235 + -1.2 68,235 + +1.6 68,235 + +2.6 68,235 + +0.1 68,235 + -2.3 68,235 + -0.2 68,235 + -0.2 68,235 + -1.8 68,235 + +2.1 68,235 + -2.1 68,235 + -1.8 68,235 + -0.8 68,235 + -1.5 68,235 + -3.2 68,236 - -1.8 68,236 - -2.4 68,236 - -0.0 68,236 - -2.0 68,236 - -0.9 68,236 - +2.1 68,236 - +0.0 68,236 - -1.4 68,236 - -0.3 68,236 - +0.7 68,236 - -0.5 68,236 - +1.0 68,236 - -0.9 68,236 - -0.2 68,236 - -1.8 68,236 - -1.8 68,236 - -0.8 68,236 - +1.8 68,236 - +0.4 68,236 - -2.2 68,448 + GFF4430 0.83 +2.1 68,448 + GFF4430 0.83 +1.6 68,448 + GFF4430 0.83 -1.8 68,448 + GFF4430 0.83 -1.4 68,449 - GFF4430 0.83 +0.4 68,449 - GFF4430 0.83 +0.7 68,449 - GFF4430 0.83 +2.1 68,449 - GFF4430 0.83 +0.5 68,449 - GFF4430 0.83 +0.9 68,449 - GFF4430 0.83 -3.8 68,449 - GFF4430 0.83 -1.1 68,449 - GFF4430 0.83 -0.5 68,449 - GFF4430 0.83 +0.7 68,724 + GFF4431 0.12 -1.1 68,724 + GFF4431 0.12 -1.2 68,724 + GFF4431 0.12 +0.5 68,725 - GFF4431 0.12 -1.5 68,725 - GFF4431 0.12 -2.6 68,725 - GFF4431 0.12 +0.9 68,725 - GFF4431 0.12 -1.8 68,754 + GFF4431 0.14 -0.1 68,754 + GFF4431 0.14 +0.0 68,755 - GFF4431 0.14 +0.3 68,755 - GFF4431 0.14 +0.3 68,755 - GFF4431 0.14 -1.9 68,755 - GFF4431 0.14 -1.4 68,755 - GFF4431 0.14 -1.8 68,755 - GFF4431 0.14 -2.1 68,755 - GFF4431 0.14 -1.5 68,755 - GFF4431 0.14 -0.2 68,868 + GFF4431 0.21 +1.7 68,868 + GFF4431 0.21 -2.4 68,868 + GFF4431 0.21 -1.3 68,868 + GFF4431 0.21 +1.6 68,868 + GFF4431 0.21 +1.2 68,868 + GFF4431 0.21 -1.1 68,868 + GFF4431 0.21 -1.7 68,868 + GFF4431 0.21 -1.4 68,868 + GFF4431 0.21 -2.4 68,868 + GFF4431 0.21 -1.6 68,868 + GFF4431 0.21 -1.2 68,868 + GFF4431 0.21 -0.5 68,868 + GFF4431 0.21 -0.1 68,868 + GFF4431 0.21 +0.1 68,868 + GFF4431 0.21 +0.6 68,868 + GFF4431 0.21 -0.5 68,869 - GFF4431 0.21 -2.6 68,869 - GFF4431 0.21 +0.8 68,869 - GFF4431 0.21 +0.5 68,869 - GFF4431 0.21 +0.1 68,869 - GFF4431 0.21 +0.5 68,869 - GFF4431 0.21 +0.9 68,869 - GFF4431 0.21 -0.4 68,869 - GFF4431 0.21 +1.1 68,869 - GFF4431 0.21 -0.5 68,869 - GFF4431 0.21 +1.9 69,036 - GFF4431 0.31 -1.1
Or see this region's nucleotide sequence