Experiment: Community=arabino-guar; Passage=4
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt GFF4371 and GFF4372 are separated by 29 nucleotides
GFF4371 - FIG074102: hypothetical protein, at 98 to 232
GFF4371
GFF4372 - ATP-dependent DNA helicase UvrD/PcrA (EC 3.6.4.12), at 262 to 2,061
GFF4372
Position (kb) 0
1 Strain fitness (log2 ratio) -4
-3
-2
-1
0
1
2
3
4
5 at 0.059 kb on + strand at 0.059 kb on + strand at 0.059 kb on + strand at 0.059 kb on + strand at 0.059 kb on + strand at 0.059 kb on + strand at 0.059 kb on + strand at 0.059 kb on + strand at 0.059 kb on + strand at 0.059 kb on + strand at 0.125 kb on + strand, within GFF4371 at 0.125 kb on + strand, within GFF4371 at 0.125 kb on + strand, within GFF4371 at 0.125 kb on + strand, within GFF4371 at 0.125 kb on + strand, within GFF4371 at 0.125 kb on + strand, within GFF4371 at 0.126 kb on - strand, within GFF4371 at 0.126 kb on - strand, within GFF4371 at 0.126 kb on - strand, within GFF4371 at 0.126 kb on - strand, within GFF4371 at 0.126 kb on - strand, within GFF4371 at 0.126 kb on - strand, within GFF4371 at 0.131 kb on - strand, within GFF4371 at 0.131 kb on - strand, within GFF4371 at 0.131 kb on - strand, within GFF4371 at 0.175 kb on + strand, within GFF4371 at 0.256 kb on + strand at 0.256 kb on + strand at 0.256 kb on + strand at 0.256 kb on + strand at 0.257 kb on - strand at 0.257 kb on - strand at 0.257 kb on - strand at 0.257 kb on - strand at 0.257 kb on - strand at 0.263 kb on + strand at 0.263 kb on + strand at 0.264 kb on - strand at 0.264 kb on - strand at 0.264 kb on - strand at 0.264 kb on - strand at 0.288 kb on + strand at 0.288 kb on + strand at 0.288 kb on + strand at 0.289 kb on - strand at 0.318 kb on - strand at 0.332 kb on + strand at 0.342 kb on + strand at 0.342 kb on + strand at 0.342 kb on + strand at 0.343 kb on - strand at 0.343 kb on - strand at 0.398 kb on + strand at 0.398 kb on + strand at 0.398 kb on + strand at 0.398 kb on + strand at 0.398 kb on + strand at 0.398 kb on + strand at 0.398 kb on + strand at 0.398 kb on + strand at 0.398 kb on + strand at 0.398 kb on + strand at 0.399 kb on - strand at 0.399 kb on - strand at 0.399 kb on - strand at 0.399 kb on - strand at 0.399 kb on - strand at 0.470 kb on + strand, within GFF4372 at 0.470 kb on + strand, within GFF4372 at 0.470 kb on + strand, within GFF4372 at 0.471 kb on - strand, within GFF4372 at 0.471 kb on - strand, within GFF4372 at 0.471 kb on - strand, within GFF4372 at 0.471 kb on - strand, within GFF4372 at 0.522 kb on + strand, within GFF4372 at 0.522 kb on + strand, within GFF4372 at 0.522 kb on + strand, within GFF4372 at 0.522 kb on + strand, within GFF4372 at 0.522 kb on + strand, within GFF4372 at 0.522 kb on + strand, within GFF4372 at 0.522 kb on + strand, within GFF4372 at 0.522 kb on + strand, within GFF4372 at 0.523 kb on - strand, within GFF4372 at 0.523 kb on - strand, within GFF4372 at 0.523 kb on - strand, within GFF4372 at 0.523 kb on - strand, within GFF4372 at 0.523 kb on - strand, within GFF4372 at 0.523 kb on - strand, within GFF4372 at 0.523 kb on - strand, within GFF4372 at 0.527 kb on - strand, within GFF4372 at 0.675 kb on - strand, within GFF4372 at 0.719 kb on + strand, within GFF4372 at 0.719 kb on + strand, within GFF4372 at 0.719 kb on + strand, within GFF4372 at 0.719 kb on + strand, within GFF4372 at 0.720 kb on - strand, within GFF4372 at 0.720 kb on - strand, within GFF4372 at 0.720 kb on - strand, within GFF4372 at 0.720 kb on - strand, within GFF4372 at 0.827 kb on - strand, within GFF4372 at 0.857 kb on + strand, within GFF4372 at 0.857 kb on + strand, within GFF4372 at 0.857 kb on + strand, within GFF4372 at 0.857 kb on + strand, within GFF4372 at 0.857 kb on + strand, within GFF4372 at 0.857 kb on + strand, within GFF4372 at 0.857 kb on + strand, within GFF4372 at 0.857 kb on + strand, within GFF4372 at 0.857 kb on + strand, within GFF4372 at 0.857 kb on + strand, within GFF4372 at 0.857 kb on + strand, within GFF4372 at 0.857 kb on + strand, within GFF4372 at 0.857 kb on + strand, within GFF4372 at 0.857 kb on + strand, within GFF4372 at 0.857 kb on + strand, within GFF4372 at 0.857 kb on + strand, within GFF4372 at 0.857 kb on + strand, within GFF4372 at 0.857 kb on + strand, within GFF4372 at 0.857 kb on + strand, within GFF4372 at 0.857 kb on + strand, within GFF4372 at 0.857 kb on + strand, within GFF4372 at 0.857 kb on + strand, within GFF4372 at 0.857 kb on + strand, within GFF4372 at 0.857 kb on + strand, within GFF4372 at 0.857 kb on + strand, within GFF4372 at 0.858 kb on - strand, within GFF4372 at 0.858 kb on - strand, within GFF4372 at 0.858 kb on - strand, within GFF4372 at 0.858 kb on - strand, within GFF4372 at 0.858 kb on - strand, within GFF4372 at 0.858 kb on - strand, within GFF4372 at 0.858 kb on - strand, within GFF4372 at 0.858 kb on - strand, within GFF4372 at 0.858 kb on - strand, within GFF4372 at 0.858 kb on - strand, within GFF4372 at 0.858 kb on - strand, within GFF4372 at 0.858 kb on - strand, within GFF4372 at 0.858 kb on - strand, within GFF4372 at 0.858 kb on - strand, within GFF4372 at 0.858 kb on - strand, within GFF4372 at 0.879 kb on + strand, within GFF4372 at 0.879 kb on + strand, within GFF4372 at 0.902 kb on + strand, within GFF4372 at 1.024 kb on + strand, within GFF4372 at 1.024 kb on + strand, within GFF4372 at 1.024 kb on + strand, within GFF4372 at 1.024 kb on + strand, within GFF4372 at 1.024 kb on + strand, within GFF4372 at 1.024 kb on + strand, within GFF4372 at 1.024 kb on + strand, within GFF4372 at 1.024 kb on + strand, within GFF4372 at 1.024 kb on + strand, within GFF4372 at 1.024 kb on + strand, within GFF4372 at 1.024 kb on + strand, within GFF4372 at 1.025 kb on - strand, within GFF4372 at 1.025 kb on - strand, within GFF4372 at 1.025 kb on - strand, within GFF4372 at 1.025 kb on - strand, within GFF4372 at 1.025 kb on - strand, within GFF4372 at 1.025 kb on - strand, within GFF4372 at 1.025 kb on - strand, within GFF4372 at 1.025 kb on - strand, within GFF4372 at 1.025 kb on - strand, within GFF4372 at 1.190 kb on + strand, within GFF4372 at 1.190 kb on + strand, within GFF4372 at 1.190 kb on + strand, within GFF4372 at 1.190 kb on + strand, within GFF4372 at 1.190 kb on + strand, within GFF4372 at 1.191 kb on - strand, within GFF4372 at 1.191 kb on - strand, within GFF4372 at 1.191 kb on - strand, within GFF4372 at 1.191 kb on - strand, within GFF4372 at 1.191 kb on - strand, within GFF4372 at 1.202 kb on + strand, within GFF4372 at 1.203 kb on - strand, within GFF4372 at 1.203 kb on - strand, within GFF4372 at 1.229 kb on + strand, within GFF4372 at 1.230 kb on - strand, within GFF4372 at 1.230 kb on - strand, within GFF4372 at 1.230 kb on - strand, within GFF4372 at 1.230 kb on - strand, within GFF4372
Per-strain Table
Position Strand Gene LocusTag Fraction Community=arabino-guar; Passage=4 remove 59 + -2.2 59 + +0.5 59 + +1.3 59 + +2.0 59 + +1.3 59 + -0.9 59 + -1.9 59 + +1.3 59 + -3.4 59 + +1.0 125 + GFF4371 0.20 +0.2 125 + GFF4371 0.20 +0.4 125 + GFF4371 0.20 -0.8 125 + GFF4371 0.20 +2.8 125 + GFF4371 0.20 +0.2 125 + GFF4371 0.20 +0.1 126 - GFF4371 0.21 -0.4 126 - GFF4371 0.21 +0.2 126 - GFF4371 0.21 -0.5 126 - GFF4371 0.21 +1.6 126 - GFF4371 0.21 +1.8 126 - GFF4371 0.21 -1.8 131 - GFF4371 0.24 +0.0 131 - GFF4371 0.24 -1.9 131 - GFF4371 0.24 +1.5 175 + GFF4371 0.57 -2.4 256 + +0.1 256 + +0.7 256 + -0.4 256 + +1.3 257 - -0.1 257 - +1.5 257 - -1.8 257 - +0.0 257 - -3.0 263 + +1.1 263 + +0.1 264 - -4.2 264 - -1.2 264 - -2.2 264 - +0.4 288 + +0.5 288 + +1.8 288 + +5.1 289 - -1.7 318 - -2.1 332 + +3.7 342 + -1.2 342 + +2.1 342 + -1.5 343 - +1.8 343 - +1.8 398 + -1.5 398 + +1.6 398 + -0.2 398 + -0.6 398 + -1.6 398 + +0.5 398 + -0.1 398 + +1.2 398 + -1.5 398 + -1.4 399 - -2.1 399 - +0.3 399 - +0.2 399 - +1.3 399 - -2.1 470 + GFF4372 0.12 -2.6 470 + GFF4372 0.12 +0.5 470 + GFF4372 0.12 +2.1 471 - GFF4372 0.12 -2.4 471 - GFF4372 0.12 -3.6 471 - GFF4372 0.12 +0.9 471 - GFF4372 0.12 +1.2 522 + GFF4372 0.14 +0.5 522 + GFF4372 0.14 -0.4 522 + GFF4372 0.14 +0.1 522 + GFF4372 0.14 -0.5 522 + GFF4372 0.14 +1.3 522 + GFF4372 0.14 -1.4 522 + GFF4372 0.14 +0.2 522 + GFF4372 0.14 -1.5 523 - GFF4372 0.14 +2.1 523 - GFF4372 0.14 -0.2 523 - GFF4372 0.14 -1.6 523 - GFF4372 0.14 +1.7 523 - GFF4372 0.14 -2.3 523 - GFF4372 0.14 -2.6 523 - GFF4372 0.14 -1.5 527 - GFF4372 0.15 -2.2 675 - GFF4372 0.23 +0.9 719 + GFF4372 0.25 -2.3 719 + GFF4372 0.25 +0.5 719 + GFF4372 0.25 +1.8 719 + GFF4372 0.25 -1.6 720 - GFF4372 0.25 +1.4 720 - GFF4372 0.25 -1.5 720 - GFF4372 0.25 -0.2 720 - GFF4372 0.25 +0.6 827 - GFF4372 0.31 -0.7 857 + GFF4372 0.33 -1.6 857 + GFF4372 0.33 -0.5 857 + GFF4372 0.33 -1.4 857 + GFF4372 0.33 +0.2 857 + GFF4372 0.33 +0.8 857 + GFF4372 0.33 +0.5 857 + GFF4372 0.33 +0.1 857 + GFF4372 0.33 -2.5 857 + GFF4372 0.33 +1.1 857 + GFF4372 0.33 +1.9 857 + GFF4372 0.33 -3.4 857 + GFF4372 0.33 -0.2 857 + GFF4372 0.33 -0.6 857 + GFF4372 0.33 +0.0 857 + GFF4372 0.33 +1.5 857 + GFF4372 0.33 +0.4 857 + GFF4372 0.33 -2.6 857 + GFF4372 0.33 -1.8 857 + GFF4372 0.33 -0.7 857 + GFF4372 0.33 +2.1 857 + GFF4372 0.33 -1.3 857 + GFF4372 0.33 -0.2 857 + GFF4372 0.33 -0.5 857 + GFF4372 0.33 -0.2 857 + GFF4372 0.33 -0.9 858 - GFF4372 0.33 +0.5 858 - GFF4372 0.33 -0.9 858 - GFF4372 0.33 +0.0 858 - GFF4372 0.33 +4.8 858 - GFF4372 0.33 -1.2 858 - GFF4372 0.33 +0.3 858 - GFF4372 0.33 +0.1 858 - GFF4372 0.33 -0.6 858 - GFF4372 0.33 -0.2 858 - GFF4372 0.33 -0.4 858 - GFF4372 0.33 +2.4 858 - GFF4372 0.33 -1.2 858 - GFF4372 0.33 -1.8 858 - GFF4372 0.33 -1.2 858 - GFF4372 0.33 +2.0 879 + GFF4372 0.34 -0.6 879 + GFF4372 0.34 -1.5 902 + GFF4372 0.36 -0.8 1,024 + GFF4372 0.42 +1.1 1,024 + GFF4372 0.42 +3.1 1,024 + GFF4372 0.42 +1.9 1,024 + GFF4372 0.42 +0.7 1,024 + GFF4372 0.42 +0.0 1,024 + GFF4372 0.42 +0.1 1,024 + GFF4372 0.42 -0.9 1,024 + GFF4372 0.42 +0.0 1,024 + GFF4372 0.42 +0.1 1,024 + GFF4372 0.42 +1.9 1,024 + GFF4372 0.42 +0.7 1,025 - GFF4372 0.42 -0.0 1,025 - GFF4372 0.42 +0.5 1,025 - GFF4372 0.42 -2.0 1,025 - GFF4372 0.42 +0.1 1,025 - GFF4372 0.42 -1.6 1,025 - GFF4372 0.42 +2.7 1,025 - GFF4372 0.42 +1.5 1,025 - GFF4372 0.42 +0.5 1,025 - GFF4372 0.42 -0.0 1,190 + GFF4372 0.52 -0.5 1,190 + GFF4372 0.52 -2.1 1,190 + GFF4372 0.52 +0.9 1,190 + GFF4372 0.52 -1.6 1,190 + GFF4372 0.52 +0.8 1,191 - GFF4372 0.52 +0.8 1,191 - GFF4372 0.52 +1.6 1,191 - GFF4372 0.52 -0.3 1,191 - GFF4372 0.52 +2.5 1,191 - GFF4372 0.52 +1.4 1,202 + GFF4372 0.52 -0.1 1,203 - GFF4372 0.52 -0.3 1,203 - GFF4372 0.52 -1.3 1,229 + GFF4372 0.54 +1.1 1,230 - GFF4372 0.54 -0.5 1,230 - GFF4372 0.54 -1.4 1,230 - GFF4372 0.54 -1.1 1,230 - GFF4372 0.54 -3.6
Or see this region's nucleotide sequence