Experiment: Community=arabino-guar; Passage=4
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt GFF4346 and GFF4347 are separated by 42 nucleotides GFF4347 and GFF4348 overlap by 1 nucleotides GFF4348 and GFF4349 overlap by 14 nucleotides GFF4349 and GFF4350 overlap by 4 nucleotides
GFF4346 - no description, at 269,205 to 270,071
GFF4346
GFF4347 - High-affinity branched-chain amino acid transport system permease protein LivH (TC 3.A.1.4.1), at 270,114 to 270,986
GFF4347
GFF4348 - hypothetical protein, at 270,986 to 272,101
GFF4348
GFF4349 - Branched-chain amino acid transport ATP-binding protein LivG (TC 3.A.1.4.1), at 272,088 to 272,786
GFF4349
GFF4350 - Branched-chain amino acid transport ATP-binding protein LivF (TC 3.A.1.4.1), at 272,783 to 273,478
GFF4350
Position (kb) 270
271
272
273 Strain fitness (log2 ratio) -1
0
1
2 at 270.059 kb on + strand at 270.276 kb on + strand, within GFF4347 at 270.531 kb on + strand, within GFF4347 at 270.546 kb on - strand, within GFF4347 at 270.751 kb on - strand, within GFF4347 at 270.921 kb on + strand at 270.922 kb on - strand at 271.173 kb on - strand, within GFF4348 at 271.712 kb on + strand, within GFF4348 at 271.712 kb on + strand, within GFF4348 at 271.784 kb on + strand, within GFF4348 at 272.939 kb on - strand, within GFF4350
Per-strain Table
Position Strand Gene LocusTag Fraction Community=arabino-guar; Passage=4 remove 270,059 + -1.5 270,276 + GFF4347 0.19 +0.8 270,531 + GFF4347 0.48 -1.5 270,546 - GFF4347 0.49 +1.1 270,751 - GFF4347 0.73 -0.9 270,921 + +0.4 270,922 - +1.1 271,173 - GFF4348 0.17 -0.5 271,712 + GFF4348 0.65 +1.3 271,712 + GFF4348 0.65 +2.1 271,784 + GFF4348 0.72 +1.7 272,939 - GFF4350 0.22 +0.1
Or see this region's nucleotide sequence