Strain Fitness in Variovorax sp. SCN45 around GFF43

Experiment: Community=arabino-guar; Passage=4

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntGFF41 and GFF42 are separated by 69 nucleotidesGFF42 and GFF43 are separated by 247 nucleotidesGFF43 and GFF44 are separated by 46 nucleotidesGFF44 and GFF45 are separated by 26 nucleotides GFF41 - no description, at 43,773 to 44,096 GFF41 GFF42 - hypothetical protein, at 44,166 to 44,612 GFF42 GFF43 - hypothetical protein, at 44,860 to 46,923 GFF43 GFF44 - hypothetical protein, at 46,970 to 47,146 GFF44 GFF45 - Phospholipase C (EC 3.1.4.3), at 47,173 to 49,449 GFF45 Position (kb) 44 45 46 47Strain fitness (log2 ratio) -4 -3 -2 -1 0 1 2 3 4at 43.885 kb on + strand, within GFF41at 43.897 kb on + strand, within GFF41at 44.085 kb on + strandat 44.085 kb on + strandat 44.085 kb on + strandat 44.086 kb on - strandat 44.141 kb on + strandat 44.142 kb on - strandat 44.142 kb on - strandat 44.197 kb on + strandat 44.197 kb on + strandat 44.197 kb on + strandat 44.197 kb on + strandat 44.197 kb on + strandat 44.197 kb on + strandat 44.198 kb on - strandat 44.198 kb on - strandat 44.198 kb on - strandat 44.198 kb on - strandat 44.198 kb on - strandat 44.198 kb on - strandat 44.198 kb on - strandat 44.269 kb on - strand, within GFF42at 44.508 kb on - strand, within GFF42at 44.554 kb on + strand, within GFF42at 44.554 kb on + strand, within GFF42at 44.554 kb on + strand, within GFF42at 44.554 kb on + strand, within GFF42at 44.554 kb on + strand, within GFF42at 44.555 kb on - strand, within GFF42at 44.555 kb on - strand, within GFF42at 44.555 kb on - strand, within GFF42at 44.555 kb on - strand, within GFF42at 44.555 kb on - strand, within GFF42at 44.555 kb on - strand, within GFF42at 44.640 kb on + strandat 44.640 kb on + strandat 44.641 kb on - strandat 44.641 kb on - strandat 44.641 kb on - strandat 44.682 kb on - strandat 44.682 kb on - strandat 44.702 kb on - strandat 44.702 kb on - strandat 44.702 kb on - strandat 44.709 kb on + strandat 44.710 kb on - strandat 44.723 kb on + strandat 44.798 kb on - strandat 44.798 kb on - strandat 44.802 kb on - strandat 44.802 kb on - strandat 44.802 kb on - strandat 44.811 kb on + strandat 44.812 kb on - strandat 44.881 kb on + strandat 44.881 kb on + strandat 44.881 kb on + strandat 44.881 kb on + strandat 44.882 kb on - strandat 44.882 kb on - strandat 44.882 kb on - strandat 45.175 kb on + strand, within GFF43at 45.175 kb on + strand, within GFF43at 45.175 kb on + strand, within GFF43at 45.175 kb on + strand, within GFF43at 45.176 kb on - strand, within GFF43at 45.176 kb on - strand, within GFF43at 45.319 kb on + strand, within GFF43at 45.319 kb on + strand, within GFF43at 45.319 kb on + strand, within GFF43at 45.319 kb on + strand, within GFF43at 45.320 kb on - strand, within GFF43at 45.352 kb on + strand, within GFF43at 45.352 kb on + strand, within GFF43at 45.352 kb on + strand, within GFF43at 45.352 kb on + strand, within GFF43at 45.460 kb on + strand, within GFF43at 45.482 kb on - strand, within GFF43at 45.482 kb on - strand, within GFF43at 45.662 kb on + strand, within GFF43at 45.853 kb on + strand, within GFF43at 45.853 kb on + strand, within GFF43at 45.853 kb on + strand, within GFF43at 45.854 kb on - strand, within GFF43at 45.854 kb on - strand, within GFF43at 46.008 kb on + strand, within GFF43at 46.008 kb on + strand, within GFF43at 46.009 kb on - strand, within GFF43at 46.034 kb on - strand, within GFF43at 46.075 kb on + strand, within GFF43at 46.075 kb on + strand, within GFF43at 46.075 kb on + strand, within GFF43at 46.075 kb on + strand, within GFF43at 46.075 kb on + strand, within GFF43at 46.075 kb on + strand, within GFF43at 46.075 kb on + strand, within GFF43at 46.076 kb on - strand, within GFF43at 46.076 kb on - strand, within GFF43at 46.076 kb on - strand, within GFF43at 46.081 kb on + strand, within GFF43at 46.081 kb on + strand, within GFF43at 46.081 kb on + strand, within GFF43at 46.081 kb on + strand, within GFF43at 46.081 kb on + strand, within GFF43at 46.082 kb on - strand, within GFF43at 46.082 kb on - strand, within GFF43at 46.082 kb on - strand, within GFF43at 46.082 kb on - strand, within GFF43at 46.082 kb on - strand, within GFF43at 46.083 kb on + strand, within GFF43at 46.084 kb on - strand, within GFF43at 46.084 kb on - strand, within GFF43at 46.171 kb on + strand, within GFF43at 46.171 kb on + strand, within GFF43at 46.172 kb on - strand, within GFF43at 46.172 kb on - strand, within GFF43at 46.172 kb on - strand, within GFF43at 46.172 kb on - strand, within GFF43at 46.174 kb on + strand, within GFF43at 46.265 kb on + strand, within GFF43at 46.265 kb on + strand, within GFF43at 46.266 kb on - strand, within GFF43at 46.266 kb on - strand, within GFF43at 46.266 kb on - strand, within GFF43at 46.266 kb on - strand, within GFF43at 46.266 kb on - strand, within GFF43at 46.457 kb on - strand, within GFF43at 46.486 kb on + strand, within GFF43at 46.487 kb on - strand, within GFF43at 46.487 kb on - strand, within GFF43at 46.487 kb on - strand, within GFF43at 46.618 kb on + strand, within GFF43at 46.619 kb on - strand, within GFF43at 46.619 kb on - strand, within GFF43at 46.663 kb on + strand, within GFF43at 46.663 kb on + strand, within GFF43at 46.663 kb on + strand, within GFF43at 46.664 kb on - strand, within GFF43at 46.664 kb on - strand, within GFF43at 46.664 kb on - strand, within GFF43at 46.783 kb on + strandat 46.783 kb on + strandat 46.783 kb on + strandat 46.783 kb on + strandat 46.784 kb on - strandat 46.784 kb on - strandat 46.786 kb on + strandat 46.786 kb on + strandat 46.786 kb on + strandat 46.787 kb on - strandat 46.787 kb on - strandat 46.787 kb on - strandat 46.885 kb on + strandat 46.885 kb on + strandat 46.886 kb on - strandat 46.886 kb on - strandat 46.886 kb on - strandat 46.886 kb on - strandat 46.886 kb on - strandat 47.001 kb on + strand, within GFF44at 47.359 kb on + strandat 47.359 kb on + strandat 47.474 kb on - strand, within GFF45at 47.517 kb on + strand, within GFF45at 47.569 kb on + strand, within GFF45at 47.569 kb on + strand, within GFF45at 47.569 kb on + strand, within GFF45at 47.569 kb on + strand, within GFF45at 47.569 kb on + strand, within GFF45at 47.569 kb on + strand, within GFF45at 47.569 kb on + strand, within GFF45at 47.569 kb on + strand, within GFF45at 47.570 kb on - strand, within GFF45at 47.570 kb on - strand, within GFF45at 47.570 kb on - strand, within GFF45at 47.570 kb on - strand, within GFF45at 47.570 kb on - strand, within GFF45at 47.570 kb on - strand, within GFF45at 47.570 kb on - strand, within GFF45at 47.608 kb on + strand, within GFF45at 47.609 kb on - strand, within GFF45at 47.609 kb on - strand, within GFF45at 47.691 kb on + strand, within GFF45at 47.691 kb on + strand, within GFF45at 47.691 kb on + strand, within GFF45at 47.692 kb on - strand, within GFF45at 47.875 kb on + strand, within GFF45at 47.875 kb on + strand, within GFF45at 47.875 kb on + strand, within GFF45at 47.875 kb on + strand, within GFF45at 47.876 kb on - strand, within GFF45

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Per-strain Table

Position Strand Gene LocusTag Fraction Community=arabino-guar; Passage=4
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43,885 + GFF41 0.35 +0.4
43,897 + GFF41 0.38 -1.6
44,085 + -2.3
44,085 + -2.0
44,085 + -0.5
44,086 - +3.7
44,141 + -1.8
44,142 - -1.5
44,142 - +2.6
44,197 + +1.1
44,197 + +1.3
44,197 + +3.8
44,197 + +0.5
44,197 + +0.7
44,197 + +1.5
44,198 - +1.0
44,198 - -0.3
44,198 - -0.1
44,198 - +0.8
44,198 - -0.0
44,198 - +0.4
44,198 - -1.0
44,269 - GFF42 0.23 -0.5
44,508 - GFF42 0.77 +1.8
44,554 + GFF42 0.87 +0.1
44,554 + GFF42 0.87 -0.5
44,554 + GFF42 0.87 -2.7
44,554 + GFF42 0.87 -1.3
44,554 + GFF42 0.87 +0.6
44,555 - GFF42 0.87 -2.7
44,555 - GFF42 0.87 +0.6
44,555 - GFF42 0.87 -1.8
44,555 - GFF42 0.87 -0.2
44,555 - GFF42 0.87 -0.2
44,555 - GFF42 0.87 -3.6
44,640 + -2.5
44,640 + -0.4
44,641 - -0.4
44,641 - -1.9
44,641 - +0.1
44,682 - -0.5
44,682 - -0.5
44,702 - -1.6
44,702 - +1.3
44,702 - -1.6
44,709 + -2.6
44,710 - -3.2
44,723 + +0.8
44,798 - -2.0
44,798 - +0.4
44,802 - -0.3
44,802 - -1.8
44,802 - +0.4
44,811 + +0.1
44,812 - -0.0
44,881 + +2.1
44,881 + -1.3
44,881 + -2.2
44,881 + -0.4
44,882 - +1.5
44,882 - +0.7
44,882 - -1.0
45,175 + GFF43 0.15 -0.2
45,175 + GFF43 0.15 -0.9
45,175 + GFF43 0.15 +1.4
45,175 + GFF43 0.15 -0.6
45,176 - GFF43 0.15 -0.7
45,176 - GFF43 0.15 -1.6
45,319 + GFF43 0.22 +1.7
45,319 + GFF43 0.22 -1.5
45,319 + GFF43 0.22 -0.7
45,319 + GFF43 0.22 -2.3
45,320 - GFF43 0.22 +0.2
45,352 + GFF43 0.24 +0.6
45,352 + GFF43 0.24 -0.1
45,352 + GFF43 0.24 -2.8
45,352 + GFF43 0.24 -0.0
45,460 + GFF43 0.29 -1.5
45,482 - GFF43 0.30 -2.3
45,482 - GFF43 0.30 -1.5
45,662 + GFF43 0.39 +2.2
45,853 + GFF43 0.48 -1.6
45,853 + GFF43 0.48 -0.8
45,853 + GFF43 0.48 -0.5
45,854 - GFF43 0.48 -0.8
45,854 - GFF43 0.48 +0.3
46,008 + GFF43 0.56 -0.8
46,008 + GFF43 0.56 -1.3
46,009 - GFF43 0.56 +0.3
46,034 - GFF43 0.57 +1.1
46,075 + GFF43 0.59 +0.8
46,075 + GFF43 0.59 +3.1
46,075 + GFF43 0.59 +1.3
46,075 + GFF43 0.59 +0.2
46,075 + GFF43 0.59 -2.8
46,075 + GFF43 0.59 +0.7
46,075 + GFF43 0.59 +1.0
46,076 - GFF43 0.59 +0.5
46,076 - GFF43 0.59 -2.6
46,076 - GFF43 0.59 +1.1
46,081 + GFF43 0.59 -1.6
46,081 + GFF43 0.59 +1.6
46,081 + GFF43 0.59 -0.3
46,081 + GFF43 0.59 -1.0
46,081 + GFF43 0.59 +2.9
46,082 - GFF43 0.59 -2.8
46,082 - GFF43 0.59 -1.5
46,082 - GFF43 0.59 -1.9
46,082 - GFF43 0.59 -1.6
46,082 - GFF43 0.59 +0.7
46,083 + GFF43 0.59 +0.7
46,084 - GFF43 0.59 -2.2
46,084 - GFF43 0.59 -1.0
46,171 + GFF43 0.64 -3.9
46,171 + GFF43 0.64 -3.2
46,172 - GFF43 0.64 -2.5
46,172 - GFF43 0.64 -0.3
46,172 - GFF43 0.64 -0.5
46,172 - GFF43 0.64 +1.0
46,174 + GFF43 0.64 -1.9
46,265 + GFF43 0.68 -1.5
46,265 + GFF43 0.68 +0.4
46,266 - GFF43 0.68 -1.8
46,266 - GFF43 0.68 -2.8
46,266 - GFF43 0.68 -2.5
46,266 - GFF43 0.68 +2.5
46,266 - GFF43 0.68 -1.5
46,457 - GFF43 0.77 -1.5
46,486 + GFF43 0.79 -1.0
46,487 - GFF43 0.79 +2.7
46,487 - GFF43 0.79 -0.5
46,487 - GFF43 0.79 -1.9
46,618 + GFF43 0.85 -0.8
46,619 - GFF43 0.85 -1.8
46,619 - GFF43 0.85 -1.3
46,663 + GFF43 0.87 +0.5
46,663 + GFF43 0.87 +0.3
46,663 + GFF43 0.87 -2.4
46,664 - GFF43 0.87 +0.5
46,664 - GFF43 0.87 -0.8
46,664 - GFF43 0.87 -2.3
46,783 + +0.2
46,783 + -0.8
46,783 + +0.5
46,783 + -2.0
46,784 - -2.0
46,784 - -1.0
46,786 + -1.9
46,786 + +0.6
46,786 + +1.3
46,787 - +1.0
46,787 - -1.2
46,787 - -0.2
46,885 + -0.3
46,885 + +0.5
46,886 - -0.3
46,886 - -2.3
46,886 - -1.3
46,886 - +2.7
46,886 - -2.8
47,001 + GFF44 0.18 +0.1
47,359 + -0.8
47,359 + +1.3
47,474 - GFF45 0.13 -0.2
47,517 + GFF45 0.15 +0.4
47,569 + GFF45 0.17 +1.5
47,569 + GFF45 0.17 +0.7
47,569 + GFF45 0.17 +1.2
47,569 + GFF45 0.17 -0.3
47,569 + GFF45 0.17 +0.2
47,569 + GFF45 0.17 +0.3
47,569 + GFF45 0.17 -0.7
47,569 + GFF45 0.17 -0.6
47,570 - GFF45 0.17 +0.9
47,570 - GFF45 0.17 -0.5
47,570 - GFF45 0.17 +0.6
47,570 - GFF45 0.17 -0.8
47,570 - GFF45 0.17 -1.8
47,570 - GFF45 0.17 -0.5
47,570 - GFF45 0.17 -0.0
47,608 + GFF45 0.19 +1.7
47,609 - GFF45 0.19 +0.8
47,609 - GFF45 0.19 -1.0
47,691 + GFF45 0.23 -0.5
47,691 + GFF45 0.23 -2.7
47,691 + GFF45 0.23 +2.1
47,692 - GFF45 0.23 -0.2
47,875 + GFF45 0.31 -1.2
47,875 + GFF45 0.31 +0.9
47,875 + GFF45 0.31 -1.0
47,875 + GFF45 0.31 +0.3
47,876 - GFF45 0.31 -1.3

Or see this region's nucleotide sequence