Experiment: Community=arabino-guar; Passage=4
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt GFF4275 and GFF4276 are separated by 118 nucleotides GFF4276 and GFF4277 are separated by 12 nucleotides GFF4277 and GFF4278 are separated by 30 nucleotides GFF4278 and GFF4279 are separated by 2 nucleotides
GFF4275 - 2-polyprenyl-6-methoxyphenol hydroxylase and related FAD-dependent oxidoreductases, at 195,072 to 196,718
GFF4275
GFF4276 - no description, at 196,837 to 197,010
GFF4276
GFF4277 - Small subunit naph/bph dioxygenase, at 197,023 to 197,607
GFF4277
GFF4278 - Putative short-chain dehydrogenase, at 197,638 to 198,438
GFF4278
GFF4279 - 3-phenylpropionate dioxygenase alpha subunit (EC 1.14.1.-), at 198,441 to 199,808
GFF4279
Position (kb) 197
198 Strain fitness (log2 ratio) -4
-3
-2
-1
0
1
2 at 196.087 kb on + strand, within GFF4275 at 196.183 kb on + strand, within GFF4275 at 196.183 kb on + strand, within GFF4275 at 196.184 kb on - strand, within GFF4275 at 196.184 kb on - strand, within GFF4275 at 196.184 kb on - strand, within GFF4275 at 196.184 kb on - strand, within GFF4275 at 196.340 kb on - strand, within GFF4275 at 196.546 kb on - strand, within GFF4275 at 196.546 kb on - strand, within GFF4275 at 196.692 kb on + strand at 196.692 kb on + strand at 196.692 kb on + strand at 196.692 kb on + strand at 196.693 kb on - strand at 196.846 kb on + strand at 197.147 kb on + strand, within GFF4277 at 197.148 kb on - strand, within GFF4277 at 197.148 kb on - strand, within GFF4277 at 197.174 kb on + strand, within GFF4277 at 197.175 kb on - strand, within GFF4277 at 197.544 kb on - strand, within GFF4277 at 197.621 kb on - strand at 197.902 kb on + strand, within GFF4278 at 197.972 kb on + strand, within GFF4278 at 197.973 kb on - strand, within GFF4278 at 197.973 kb on - strand, within GFF4278 at 197.973 kb on - strand, within GFF4278 at 198.077 kb on + strand, within GFF4278 at 198.077 kb on + strand, within GFF4278 at 198.077 kb on + strand, within GFF4278 at 198.077 kb on + strand, within GFF4278 at 198.077 kb on + strand, within GFF4278 at 198.078 kb on - strand, within GFF4278 at 198.078 kb on - strand, within GFF4278 at 198.078 kb on - strand, within GFF4278 at 198.511 kb on + strand at 198.512 kb on - strand at 198.512 kb on - strand at 198.529 kb on + strand at 198.529 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction Community=arabino-guar; Passage=4 remove 196,087 + GFF4275 0.62 -2.0 196,183 + GFF4275 0.67 +2.5 196,183 + GFF4275 0.67 +0.8 196,184 - GFF4275 0.68 +1.1 196,184 - GFF4275 0.68 -2.4 196,184 - GFF4275 0.68 +0.0 196,184 - GFF4275 0.68 -4.4 196,340 - GFF4275 0.77 +1.5 196,546 - GFF4275 0.89 +0.2 196,546 - GFF4275 0.89 +0.2 196,692 + -2.2 196,692 + -0.6 196,692 + -2.1 196,692 + -2.0 196,693 - -1.6 196,846 + +0.8 197,147 + GFF4277 0.21 -3.9 197,148 - GFF4277 0.21 -0.9 197,148 - GFF4277 0.21 -3.4 197,174 + GFF4277 0.26 -1.8 197,175 - GFF4277 0.26 -2.7 197,544 - GFF4277 0.89 -1.4 197,621 - +1.5 197,902 + GFF4278 0.33 -3.2 197,972 + GFF4278 0.42 -0.3 197,973 - GFF4278 0.42 -1.9 197,973 - GFF4278 0.42 +2.0 197,973 - GFF4278 0.42 -0.5 198,077 + GFF4278 0.55 -2.0 198,077 + GFF4278 0.55 -1.0 198,077 + GFF4278 0.55 -1.4 198,077 + GFF4278 0.55 -2.4 198,077 + GFF4278 0.55 +1.7 198,078 - GFF4278 0.55 +1.2 198,078 - GFF4278 0.55 -1.0 198,078 - GFF4278 0.55 -1.4 198,511 + +2.5 198,512 - -3.2 198,512 - -1.5 198,529 + +1.0 198,529 + +2.2
Or see this region's nucleotide sequence