Strain Fitness in Variovorax sp. SCN45 around GFF4251

Experiment: Community=arabino-guar; Passage=4

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntGFF4249 and GFF4250 are separated by 59 nucleotidesGFF4250 and GFF4251 are separated by 102 nucleotidesGFF4251 and GFF4252 are separated by 81 nucleotides GFF4249 - hypothetical protein, at 164,095 to 165,507 GFF4249 GFF4250 - Transcriptional regulator, AcrR family, at 165,567 to 166,118 GFF4250 GFF4251 - no description, at 166,221 to 166,895 GFF4251 GFF4252 - hypothetical protein, at 166,977 to 168,728 GFF4252 Position (kb) 166 167Strain fitness (log2 ratio) -4 -3 -2 -1 0 1 2 3at 165.235 kb on + strand, within GFF4249at 165.235 kb on + strand, within GFF4249at 165.235 kb on + strand, within GFF4249at 165.235 kb on + strand, within GFF4249at 165.237 kb on + strand, within GFF4249at 165.237 kb on + strand, within GFF4249at 165.238 kb on - strand, within GFF4249at 165.248 kb on - strand, within GFF4249at 165.330 kb on + strand, within GFF4249at 165.330 kb on + strand, within GFF4249at 165.331 kb on - strand, within GFF4249at 165.331 kb on - strand, within GFF4249at 165.331 kb on - strand, within GFF4249at 165.331 kb on - strand, within GFF4249at 165.382 kb on + strandat 165.382 kb on + strandat 165.382 kb on + strandat 165.383 kb on - strandat 165.383 kb on - strandat 165.383 kb on - strandat 165.419 kb on - strandat 165.994 kb on + strand, within GFF4250at 165.994 kb on + strand, within GFF4250at 165.994 kb on + strand, within GFF4250at 165.994 kb on + strand, within GFF4250at 165.994 kb on + strand, within GFF4250at 165.994 kb on + strand, within GFF4250at 165.995 kb on - strand, within GFF4250at 165.995 kb on - strand, within GFF4250at 165.995 kb on - strand, within GFF4250at 166.238 kb on + strandat 166.238 kb on + strandat 166.238 kb on + strandat 166.239 kb on - strandat 166.239 kb on - strandat 166.437 kb on + strand, within GFF4251at 166.437 kb on + strand, within GFF4251at 166.437 kb on + strand, within GFF4251at 166.437 kb on + strand, within GFF4251at 166.438 kb on - strand, within GFF4251at 166.438 kb on - strand, within GFF4251at 166.438 kb on - strand, within GFF4251at 166.438 kb on - strand, within GFF4251at 166.438 kb on - strand, within GFF4251at 166.438 kb on - strand, within GFF4251at 166.438 kb on - strand, within GFF4251at 166.620 kb on + strand, within GFF4251at 166.620 kb on + strand, within GFF4251at 166.621 kb on - strand, within GFF4251at 166.621 kb on - strand, within GFF4251at 166.773 kb on + strand, within GFF4251at 166.774 kb on - strand, within GFF4251at 166.785 kb on + strand, within GFF4251at 166.785 kb on + strand, within GFF4251at 166.785 kb on + strand, within GFF4251at 166.785 kb on + strand, within GFF4251at 166.785 kb on + strand, within GFF4251at 166.786 kb on - strand, within GFF4251at 166.786 kb on - strand, within GFF4251at 166.893 kb on + strandat 166.893 kb on + strandat 166.894 kb on - strandat 167.044 kb on + strandat 167.044 kb on + strandat 167.045 kb on - strandat 167.045 kb on - strandat 167.101 kb on + strandat 167.101 kb on + strandat 167.101 kb on + strandat 167.102 kb on - strandat 167.102 kb on - strandat 167.360 kb on + strand, within GFF4252at 167.360 kb on + strand, within GFF4252at 167.361 kb on - strand, within GFF4252at 167.361 kb on - strand, within GFF4252at 167.361 kb on - strand, within GFF4252at 167.389 kb on + strand, within GFF4252at 167.390 kb on - strand, within GFF4252at 167.390 kb on - strand, within GFF4252at 167.465 kb on + strand, within GFF4252at 167.466 kb on - strand, within GFF4252at 167.578 kb on + strand, within GFF4252at 167.578 kb on + strand, within GFF4252at 167.578 kb on + strand, within GFF4252at 167.578 kb on + strand, within GFF4252at 167.636 kb on - strand, within GFF4252at 167.636 kb on - strand, within GFF4252at 167.697 kb on - strand, within GFF4252at 167.697 kb on - strand, within GFF4252at 167.773 kb on + strand, within GFF4252at 167.773 kb on + strand, within GFF4252at 167.773 kb on + strand, within GFF4252at 167.773 kb on + strand, within GFF4252at 167.773 kb on + strand, within GFF4252at 167.773 kb on + strand, within GFF4252at 167.773 kb on + strand, within GFF4252at 167.773 kb on + strand, within GFF4252at 167.773 kb on + strand, within GFF4252at 167.773 kb on + strand, within GFF4252at 167.774 kb on - strand, within GFF4252at 167.774 kb on - strand, within GFF4252at 167.774 kb on - strand, within GFF4252at 167.774 kb on - strand, within GFF4252at 167.774 kb on - strand, within GFF4252at 167.774 kb on - strand, within GFF4252at 167.775 kb on + strand, within GFF4252at 167.775 kb on + strand, within GFF4252at 167.775 kb on + strand, within GFF4252at 167.775 kb on + strand, within GFF4252at 167.776 kb on - strand, within GFF4252at 167.776 kb on - strand, within GFF4252at 167.776 kb on - strand, within GFF4252at 167.891 kb on - strand, within GFF4252at 167.891 kb on - strand, within GFF4252

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction Community=arabino-guar; Passage=4
remove
165,235 + GFF4249 0.81 -0.0
165,235 + GFF4249 0.81 -0.0
165,235 + GFF4249 0.81 -1.2
165,235 + GFF4249 0.81 -0.9
165,237 + GFF4249 0.81 -2.2
165,237 + GFF4249 0.81 -2.2
165,238 - GFF4249 0.81 -1.5
165,248 - GFF4249 0.82 -1.6
165,330 + GFF4249 0.87 -1.4
165,330 + GFF4249 0.87 -1.2
165,331 - GFF4249 0.87 -1.7
165,331 - GFF4249 0.87 -1.4
165,331 - GFF4249 0.87 -0.9
165,331 - GFF4249 0.87 -1.6
165,382 + +0.5
165,382 + -1.4
165,382 + -1.7
165,383 - -0.2
165,383 - +1.9
165,383 - -2.0
165,419 - -0.1
165,994 + GFF4250 0.77 +2.2
165,994 + GFF4250 0.77 -0.8
165,994 + GFF4250 0.77 -1.7
165,994 + GFF4250 0.77 +0.6
165,994 + GFF4250 0.77 -3.5
165,994 + GFF4250 0.77 -0.0
165,995 - GFF4250 0.78 -0.7
165,995 - GFF4250 0.78 +2.2
165,995 - GFF4250 0.78 -2.0
166,238 + -0.4
166,238 + +1.0
166,238 + +0.2
166,239 - -1.6
166,239 - -0.4
166,437 + GFF4251 0.32 -0.3
166,437 + GFF4251 0.32 -1.2
166,437 + GFF4251 0.32 -0.0
166,437 + GFF4251 0.32 -1.2
166,438 - GFF4251 0.32 +0.8
166,438 - GFF4251 0.32 -2.0
166,438 - GFF4251 0.32 -2.4
166,438 - GFF4251 0.32 +1.4
166,438 - GFF4251 0.32 +0.4
166,438 - GFF4251 0.32 -2.5
166,438 - GFF4251 0.32 -2.1
166,620 + GFF4251 0.59 +1.0
166,620 + GFF4251 0.59 +0.3
166,621 - GFF4251 0.59 +3.0
166,621 - GFF4251 0.59 -2.0
166,773 + GFF4251 0.82 -3.0
166,774 - GFF4251 0.82 -2.4
166,785 + GFF4251 0.84 -1.9
166,785 + GFF4251 0.84 -1.6
166,785 + GFF4251 0.84 -0.6
166,785 + GFF4251 0.84 +0.6
166,785 + GFF4251 0.84 -2.3
166,786 - GFF4251 0.84 -0.2
166,786 - GFF4251 0.84 -0.5
166,893 + +2.3
166,893 + -2.2
166,894 - +1.2
167,044 + +0.9
167,044 + +1.4
167,045 - -2.6
167,045 - -2.4
167,101 + -0.7
167,101 + +1.0
167,101 + -1.5
167,102 - -1.6
167,102 - +0.0
167,360 + GFF4252 0.22 +0.3
167,360 + GFF4252 0.22 +3.0
167,361 - GFF4252 0.22 -1.7
167,361 - GFF4252 0.22 -0.6
167,361 - GFF4252 0.22 -2.4
167,389 + GFF4252 0.24 +0.3
167,390 - GFF4252 0.24 -1.4
167,390 - GFF4252 0.24 -4.6
167,465 + GFF4252 0.28 -1.4
167,466 - GFF4252 0.28 -0.4
167,578 + GFF4252 0.34 +1.0
167,578 + GFF4252 0.34 +0.1
167,578 + GFF4252 0.34 -0.3
167,578 + GFF4252 0.34 -0.1
167,636 - GFF4252 0.38 +0.7
167,636 - GFF4252 0.38 -1.3
167,697 - GFF4252 0.41 -0.7
167,697 - GFF4252 0.41 +0.3
167,773 + GFF4252 0.45 +0.1
167,773 + GFF4252 0.45 -3.0
167,773 + GFF4252 0.45 +0.5
167,773 + GFF4252 0.45 +1.7
167,773 + GFF4252 0.45 -1.0
167,773 + GFF4252 0.45 -2.2
167,773 + GFF4252 0.45 -2.7
167,773 + GFF4252 0.45 -2.9
167,773 + GFF4252 0.45 -0.0
167,773 + GFF4252 0.45 +1.3
167,774 - GFF4252 0.45 +2.7
167,774 - GFF4252 0.45 -2.3
167,774 - GFF4252 0.45 -2.1
167,774 - GFF4252 0.45 +1.5
167,774 - GFF4252 0.45 -0.1
167,774 - GFF4252 0.45 +1.5
167,775 + GFF4252 0.46 +0.3
167,775 + GFF4252 0.46 +0.2
167,775 + GFF4252 0.46 +0.3
167,775 + GFF4252 0.46 +0.6
167,776 - GFF4252 0.46 -2.2
167,776 - GFF4252 0.46 -0.9
167,776 - GFF4252 0.46 -2.7
167,891 - GFF4252 0.52 +0.9
167,891 - GFF4252 0.52 -4.5

Or see this region's nucleotide sequence