Experiment: Community=arabino-guar; Passage=4
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt GFF4227 and GFF4228 are separated by 21 nucleotides GFF4228 and GFF4229 overlap by 4 nucleotides GFF4229 and GFF4230 are separated by 66 nucleotides
GFF4227 - Thiamine pyrophosphate-requiring enzymes, at 138,721 to 140,361
GFF4227
GFF4228 - 2-hydroxychromene-2-carboxylate isomerase, at 140,383 to 141,003
GFF4228
GFF4229 - Transcriptional regulator, at 141,000 to 141,641
GFF4229
GFF4230 - Transcriptional regulator of pyridoxine metabolism / Pyridoxamine phosphate aminotransferase (EC 2.6.1.54), at 141,708 to 143,018
GFF4230
Position (kb) 140
141
142 Strain fitness (log2 ratio) -4
-3
-2
-1
0
1
2 at 139.618 kb on + strand, within GFF4227 at 139.618 kb on + strand, within GFF4227 at 139.618 kb on + strand, within GFF4227 at 139.619 kb on - strand, within GFF4227 at 139.619 kb on - strand, within GFF4227 at 140.122 kb on + strand, within GFF4227 at 140.405 kb on - strand at 140.405 kb on - strand at 140.407 kb on + strand at 140.407 kb on + strand at 140.516 kb on - strand, within GFF4228 at 140.545 kb on + strand, within GFF4228 at 140.854 kb on + strand, within GFF4228 at 140.855 kb on - strand, within GFF4228 at 140.855 kb on - strand, within GFF4228 at 140.864 kb on - strand, within GFF4228 at 140.908 kb on + strand, within GFF4228 at 140.909 kb on - strand, within GFF4228 at 141.002 kb on - strand at 141.184 kb on + strand, within GFF4229 at 141.185 kb on - strand, within GFF4229 at 141.278 kb on - strand, within GFF4229 at 141.278 kb on - strand, within GFF4229 at 141.278 kb on - strand, within GFF4229 at 141.328 kb on + strand, within GFF4229 at 141.387 kb on + strand, within GFF4229 at 141.391 kb on + strand, within GFF4229 at 141.392 kb on - strand, within GFF4229 at 141.637 kb on + strand at 141.637 kb on + strand at 141.637 kb on + strand at 141.637 kb on + strand at 141.638 kb on - strand at 141.638 kb on - strand at 141.638 kb on - strand at 141.638 kb on - strand at 141.638 kb on - strand at 141.638 kb on - strand at 141.638 kb on - strand at 141.638 kb on - strand at 141.638 kb on - strand at 141.638 kb on - strand at 141.638 kb on - strand at 141.638 kb on - strand at 141.638 kb on - strand at 141.666 kb on + strand at 141.842 kb on + strand, within GFF4230 at 141.858 kb on + strand, within GFF4230 at 141.859 kb on - strand, within GFF4230 at 141.903 kb on + strand, within GFF4230 at 141.904 kb on - strand, within GFF4230
Per-strain Table
Position Strand Gene LocusTag Fraction Community=arabino-guar; Passage=4 remove 139,618 + GFF4227 0.55 -3.3 139,618 + GFF4227 0.55 +0.1 139,618 + GFF4227 0.55 -3.5 139,619 - GFF4227 0.55 -0.7 139,619 - GFF4227 0.55 +0.5 140,122 + GFF4227 0.85 +1.3 140,405 - -2.0 140,405 - -2.4 140,407 + +1.1 140,407 + -1.4 140,516 - GFF4228 0.21 -1.5 140,545 + GFF4228 0.26 -2.7 140,854 + GFF4228 0.76 -1.7 140,855 - GFF4228 0.76 -1.4 140,855 - GFF4228 0.76 -4.2 140,864 - GFF4228 0.77 -2.3 140,908 + GFF4228 0.85 -2.0 140,909 - GFF4228 0.85 +0.4 141,002 - -1.0 141,184 + GFF4229 0.29 +2.1 141,185 - GFF4229 0.29 +2.0 141,278 - GFF4229 0.43 -0.6 141,278 - GFF4229 0.43 -1.0 141,278 - GFF4229 0.43 -0.3 141,328 + GFF4229 0.51 -1.9 141,387 + GFF4229 0.60 -0.0 141,391 + GFF4229 0.61 -0.8 141,392 - GFF4229 0.61 +0.8 141,637 + -0.4 141,637 + -0.3 141,637 + -0.0 141,637 + -0.4 141,638 - +0.9 141,638 - -2.3 141,638 - -2.7 141,638 - -0.0 141,638 - -0.4 141,638 - +2.0 141,638 - -0.2 141,638 - -0.0 141,638 - -0.4 141,638 - +0.9 141,638 - +1.9 141,638 - -0.5 141,638 - -0.5 141,666 + -1.4 141,842 + GFF4230 0.10 +0.4 141,858 + GFF4230 0.11 -1.1 141,859 - GFF4230 0.12 +0.5 141,903 + GFF4230 0.15 -3.0 141,904 - GFF4230 0.15 -0.2
Or see this region's nucleotide sequence