Strain Fitness in Variovorax sp. SCN45 around GFF4164
Experiment: Community=arabino-guar; Passage=4
Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.
Per-strain Table
Position | Strand | Gene | LocusTag | Fraction | Community=arabino-guar; Passage=4 |
---|---|---|---|---|---|
remove | |||||
68,001 | + | GFF4163 | 0.25 | -0.4 | |
68,227 | - | GFF4163 | 0.44 | +4.0 | |
68,227 | - | GFF4163 | 0.44 | +1.8 | |
68,253 | + | GFF4163 | 0.46 | -2.3 | |
68,581 | - | GFF4163 | 0.73 | +0.4 | |
69,839 | - | GFF4164 | 0.70 | -2.6 | |
69,913 | + | GFF4164 | 0.76 | -2.1 | |
69,914 | - | GFF4164 | 0.76 | +2.0 | |
69,914 | - | GFF4164 | 0.76 | -0.4 | |
70,097 | - | GFF4164 | 0.90 | -1.9 | |
70,097 | - | GFF4164 | 0.90 | -0.4 | |
70,404 | + | GFF4165 | 0.20 | -1.5 |
Or see this region's nucleotide sequence