Experiment: Community=arabino-guar; Passage=4
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt GFF4088 and GFF4089 are separated by 57 nucleotides GFF4089 and GFF4090 overlap by 1 nucleotides GFF4090 and GFF4091 are separated by 0 nucleotides
GFF4088 - Glutamate/aspartate ABC transporter, substrate-binding protein GltI (TC 3.A.1.3.4), at 300,890 to 301,816
GFF4088
GFF4089 - Glutamate/aspartate ABC transporter, permease protein GltJ (TC 3.A.1.3.4), at 301,874 to 302,611
GFF4089
GFF4090 - Glutamate/aspartate ABC transporter, permease protein GltK (TC 3.A.1.3.4), at 302,611 to 303,300
GFF4090
GFF4091 - Glutamate/aspartate ABC transporter, ATP-binding protein GltL (TC 3.A.1.3.4), at 303,301 to 304,044
GFF4091
Position (kb) 301
302
303 Strain fitness (log2 ratio) -3
-2
-1
0
1
2 at 301.607 kb on + strand, within GFF4088 at 301.608 kb on - strand, within GFF4088 at 301.814 kb on + strand at 301.815 kb on - strand at 301.815 kb on - strand at 301.860 kb on - strand at 301.880 kb on + strand at 302.075 kb on + strand, within GFF4089 at 302.075 kb on + strand, within GFF4089 at 302.075 kb on + strand, within GFF4089 at 302.076 kb on - strand, within GFF4089 at 302.076 kb on - strand, within GFF4089 at 302.149 kb on - strand, within GFF4089 at 302.477 kb on + strand, within GFF4089 at 302.525 kb on + strand, within GFF4089 at 302.525 kb on + strand, within GFF4089 at 302.525 kb on + strand, within GFF4089 at 302.525 kb on + strand, within GFF4089 at 302.540 kb on + strand at 302.541 kb on - strand at 302.789 kb on - strand, within GFF4090 at 302.905 kb on + strand, within GFF4090 at 302.905 kb on + strand, within GFF4090 at 302.906 kb on - strand, within GFF4090 at 302.944 kb on + strand, within GFF4090 at 302.947 kb on + strand, within GFF4090 at 303.206 kb on - strand, within GFF4090 at 303.206 kb on - strand, within GFF4090 at 303.206 kb on - strand, within GFF4090 at 303.340 kb on + strand at 303.341 kb on - strand at 303.496 kb on - strand, within GFF4091 at 303.525 kb on - strand, within GFF4091
Per-strain Table
Position Strand Gene LocusTag Fraction Community=arabino-guar; Passage=4 remove 301,607 + GFF4088 0.77 +0.7 301,608 - GFF4088 0.77 +1.3 301,814 + +0.4 301,815 - -0.4 301,815 - +0.1 301,860 - +0.4 301,880 + -0.2 302,075 + GFF4089 0.27 -0.6 302,075 + GFF4089 0.27 -0.6 302,075 + GFF4089 0.27 +2.2 302,076 - GFF4089 0.27 +0.5 302,076 - GFF4089 0.27 -0.5 302,149 - GFF4089 0.37 +0.9 302,477 + GFF4089 0.82 -0.4 302,525 + GFF4089 0.88 +0.9 302,525 + GFF4089 0.88 +0.4 302,525 + GFF4089 0.88 +0.2 302,525 + GFF4089 0.88 -0.6 302,540 + -0.4 302,541 - -3.2 302,789 - GFF4090 0.26 +1.2 302,905 + GFF4090 0.43 +0.5 302,905 + GFF4090 0.43 +0.3 302,906 - GFF4090 0.43 +1.3 302,944 + GFF4090 0.48 -0.2 302,947 + GFF4090 0.49 -2.2 303,206 - GFF4090 0.86 -1.6 303,206 - GFF4090 0.86 +0.6 303,206 - GFF4090 0.86 +0.0 303,340 + +0.9 303,341 - +1.5 303,496 - GFF4091 0.26 -0.1 303,525 - GFF4091 0.30 +1.7
Or see this region's nucleotide sequence