Experiment: Community=arabino-guar; Passage=4
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt GFF4077 and GFF4078 are separated by 82 nucleotides GFF4078 and GFF4079 are separated by 60 nucleotides GFF4079 and GFF4080 are separated by 117 nucleotides GFF4080 and GFF4081 are separated by 90 nucleotides
GFF4077 - hypothetical protein, at 290,603 to 291,415
GFF4077
GFF4078 - hypothetical protein, at 291,498 to 291,890
GFF4078
GFF4079 - Cytochrome c4, at 291,951 to 292,610
GFF4079
GFF4080 - no description, at 292,728 to 292,955
GFF4080
GFF4081 - Multicopper oxidase, at 293,046 to 295,061
GFF4081
Position (kb) 291
292
293 Strain fitness (log2 ratio) -3
-2
-1
0
1
2 at 291.203 kb on + strand, within GFF4077 at 291.218 kb on + strand, within GFF4077 at 291.219 kb on - strand, within GFF4077 at 291.269 kb on + strand, within GFF4077 at 291.311 kb on + strand, within GFF4077 at 291.353 kb on + strand at 291.402 kb on - strand at 291.470 kb on + strand at 291.471 kb on - strand at 291.471 kb on - strand at 291.504 kb on + strand at 291.504 kb on + strand at 291.941 kb on + strand at 291.941 kb on + strand at 291.941 kb on + strand at 291.941 kb on + strand at 291.941 kb on + strand at 291.941 kb on + strand at 291.942 kb on - strand at 291.942 kb on - strand at 292.189 kb on - strand, within GFF4079 at 292.479 kb on + strand, within GFF4079 at 292.658 kb on + strand at 292.659 kb on - strand at 293.068 kb on - strand at 293.113 kb on - strand at 293.214 kb on + strand at 293.466 kb on + strand, within GFF4081 at 293.467 kb on - strand, within GFF4081
Per-strain Table
Position Strand Gene LocusTag Fraction Community=arabino-guar; Passage=4 remove 291,203 + GFF4077 0.74 -1.9 291,218 + GFF4077 0.76 -0.9 291,219 - GFF4077 0.76 +0.4 291,269 + GFF4077 0.82 -3.1 291,311 + GFF4077 0.87 -0.3 291,353 + +1.2 291,402 - +0.7 291,470 + -1.5 291,471 - -0.8 291,471 - -1.4 291,504 + -2.1 291,504 + -2.0 291,941 + -1.8 291,941 + -1.6 291,941 + -1.1 291,941 + +2.0 291,941 + -1.2 291,941 + -2.4 291,942 - +1.7 291,942 - -0.3 292,189 - GFF4079 0.36 +1.0 292,479 + GFF4079 0.80 +0.7 292,658 + +1.0 292,659 - -0.3 293,068 - -1.6 293,113 - -2.0 293,214 + -0.4 293,466 + GFF4081 0.21 +0.6 293,467 - GFF4081 0.21 -0.4
Or see this region's nucleotide sequence