Experiment: Community=arabino-guar; Passage=4
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt GFF4024 and GFF4025 are separated by 71 nucleotides GFF4025 and GFF4026 are separated by 10 nucleotides GFF4026 and GFF4027 overlap by 4 nucleotides GFF4027 and GFF4028 are separated by 165 nucleotides
GFF4024 - Transcriptional regulator, MerR family, at 232,229 to 232,624
GFF4024
GFF4025 - Mercuric transport protein, MerT, at 232,696 to 233,037
GFF4025
GFF4026 - Periplasmic mercury(+2) binding protein, MerP, at 233,048 to 233,326
GFF4026
GFF4027 - hypothetical protein, at 233,323 to 233,553
GFF4027
GFF4028 - Cytochrome c, class I, at 233,719 to 235,668
GFF4028
Position (kb) 233
234 Strain fitness (log2 ratio) -4
-3
-2
-1
0
1
2
3 at 232.557 kb on + strand, within GFF4024 at 232.557 kb on + strand, within GFF4024 at 232.558 kb on - strand, within GFF4024 at 232.558 kb on - strand, within GFF4024 at 232.561 kb on - strand, within GFF4024 at 232.654 kb on - strand at 232.663 kb on - strand at 232.695 kb on + strand at 232.695 kb on + strand at 232.695 kb on + strand at 233.242 kb on + strand, within GFF4026 at 233.425 kb on + strand, within GFF4027 at 233.426 kb on - strand, within GFF4027 at 233.426 kb on - strand, within GFF4027 at 233.426 kb on - strand, within GFF4027 at 233.568 kb on + strand at 233.568 kb on + strand at 233.715 kb on + strand at 233.715 kb on + strand at 233.716 kb on - strand at 233.716 kb on - strand at 233.822 kb on + strand at 233.822 kb on + strand at 233.823 kb on - strand at 233.834 kb on - strand at 233.845 kb on + strand at 233.845 kb on + strand at 233.914 kb on + strand, within GFF4028 at 233.986 kb on - strand, within GFF4028 at 234.083 kb on + strand, within GFF4028 at 234.113 kb on + strand, within GFF4028 at 234.192 kb on - strand, within GFF4028 at 234.320 kb on + strand, within GFF4028 at 234.383 kb on + strand, within GFF4028 at 234.383 kb on + strand, within GFF4028 at 234.383 kb on + strand, within GFF4028 at 234.384 kb on - strand, within GFF4028 at 234.384 kb on - strand, within GFF4028 at 234.384 kb on - strand, within GFF4028 at 234.551 kb on + strand, within GFF4028
Per-strain Table
Position Strand Gene LocusTag Fraction Community=arabino-guar; Passage=4 remove 232,557 + GFF4024 0.83 -1.4 232,557 + GFF4024 0.83 -1.2 232,558 - GFF4024 0.83 -0.2 232,558 - GFF4024 0.83 -2.2 232,561 - GFF4024 0.84 -3.2 232,654 - -2.6 232,663 - -1.8 232,695 + +1.0 232,695 + -1.2 232,695 + +0.8 233,242 + GFF4026 0.70 -2.3 233,425 + GFF4027 0.44 +2.4 233,426 - GFF4027 0.45 +0.1 233,426 - GFF4027 0.45 +1.6 233,426 - GFF4027 0.45 -0.5 233,568 + -0.1 233,568 + -0.6 233,715 + -1.7 233,715 + +3.3 233,716 - -3.9 233,716 - -3.1 233,822 + -1.9 233,822 + -0.6 233,823 - +1.8 233,834 - -2.2 233,845 + +1.5 233,845 + -2.3 233,914 + GFF4028 0.10 -0.1 233,986 - GFF4028 0.14 -0.4 234,083 + GFF4028 0.19 -1.6 234,113 + GFF4028 0.20 -2.3 234,192 - GFF4028 0.24 -4.1 234,320 + GFF4028 0.31 -2.3 234,383 + GFF4028 0.34 -0.3 234,383 + GFF4028 0.34 -1.2 234,383 + GFF4028 0.34 -0.7 234,384 - GFF4028 0.34 +0.0 234,384 - GFF4028 0.34 -2.0 234,384 - GFF4028 0.34 +0.7 234,551 + GFF4028 0.43 +1.3
Or see this region's nucleotide sequence