Experiment: Community=arabino-guar; Passage=4
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt GFF2 and GFF3 are separated by 63 nucleotides GFF3 and GFF4 are separated by 7 nucleotides GFF4 and GFF5 overlap by 4 nucleotides
GFF2 - Transcription accessory protein (S1 RNA-binding domain), at 1,164 to 3,539
GFF2
GFF3 - VapB protein (antitoxin to VapC), at 3,603 to 3,860
GFF3
GFF4 - VapC toxin protein, at 3,868 to 4,281
GFF4
GFF5 - FIG00537881: hypothetical protein, at 4,278 to 5,351
GFF5
Position (kb) 3
4
5 Strain fitness (log2 ratio) -4
-3
-2
-1
0
1
2
3 at 2.940 kb on + strand, within GFF2 at 2.940 kb on + strand, within GFF2 at 2.940 kb on + strand, within GFF2 at 3.537 kb on + strand at 3.537 kb on + strand at 3.537 kb on + strand at 3.537 kb on + strand at 3.537 kb on + strand at 3.537 kb on + strand at 3.537 kb on + strand at 3.537 kb on + strand at 3.537 kb on + strand at 3.537 kb on + strand at 3.538 kb on - strand at 3.538 kb on - strand at 3.538 kb on - strand at 3.538 kb on - strand at 3.538 kb on - strand at 3.538 kb on - strand at 3.538 kb on - strand at 3.538 kb on - strand at 3.538 kb on - strand at 3.538 kb on - strand at 3.538 kb on - strand at 3.538 kb on - strand at 3.541 kb on + strand at 3.541 kb on + strand at 3.541 kb on + strand at 3.541 kb on + strand at 3.542 kb on - strand at 3.542 kb on - strand at 3.542 kb on - strand at 3.542 kb on - strand at 3.571 kb on + strand at 3.572 kb on - strand at 3.871 kb on + strand at 3.871 kb on + strand at 3.871 kb on + strand at 3.871 kb on + strand at 3.871 kb on + strand at 3.872 kb on - strand at 3.872 kb on - strand at 3.872 kb on - strand at 3.872 kb on - strand at 3.872 kb on - strand at 3.872 kb on - strand at 4.081 kb on + strand, within GFF4 at 4.081 kb on + strand, within GFF4 at 4.081 kb on + strand, within GFF4 at 4.081 kb on + strand, within GFF4 at 4.081 kb on + strand, within GFF4 at 4.081 kb on + strand, within GFF4 at 4.082 kb on - strand, within GFF4 at 4.082 kb on - strand, within GFF4 at 4.082 kb on - strand, within GFF4 at 4.082 kb on - strand, within GFF4 at 4.082 kb on - strand, within GFF4 at 4.156 kb on + strand, within GFF4 at 4.156 kb on + strand, within GFF4 at 4.157 kb on - strand, within GFF4 at 4.157 kb on - strand, within GFF4 at 4.157 kb on - strand, within GFF4 at 4.157 kb on - strand, within GFF4 at 4.157 kb on - strand, within GFF4 at 4.250 kb on + strand at 4.250 kb on + strand at 4.250 kb on + strand at 4.250 kb on + strand at 4.250 kb on + strand at 4.250 kb on + strand at 4.250 kb on + strand at 4.250 kb on + strand at 4.250 kb on + strand at 4.250 kb on + strand at 4.251 kb on - strand at 4.251 kb on - strand at 4.251 kb on - strand at 4.251 kb on - strand at 4.251 kb on - strand at 4.251 kb on - strand at 4.296 kb on + strand at 4.296 kb on + strand at 4.296 kb on + strand at 4.296 kb on + strand at 4.297 kb on - strand at 4.297 kb on - strand at 4.297 kb on - strand at 4.297 kb on - strand at 4.548 kb on + strand, within GFF5 at 4.548 kb on + strand, within GFF5 at 4.549 kb on - strand, within GFF5 at 4.549 kb on - strand, within GFF5 at 4.641 kb on + strand, within GFF5 at 4.755 kb on + strand, within GFF5 at 4.755 kb on + strand, within GFF5 at 4.755 kb on + strand, within GFF5 at 4.756 kb on - strand, within GFF5 at 4.756 kb on - strand, within GFF5 at 4.756 kb on - strand, within GFF5 at 4.986 kb on + strand, within GFF5 at 5.010 kb on + strand, within GFF5 at 5.010 kb on + strand, within GFF5 at 5.011 kb on - strand, within GFF5 at 5.011 kb on - strand, within GFF5 at 5.028 kb on + strand, within GFF5 at 5.058 kb on + strand, within GFF5
Per-strain Table
Position Strand Gene LocusTag Fraction Community=arabino-guar; Passage=4 remove 2,940 + GFF2 0.75 -1.8 2,940 + GFF2 0.75 +1.0 2,940 + GFF2 0.75 -0.5 3,537 + +0.5 3,537 + -1.6 3,537 + +1.5 3,537 + +0.0 3,537 + -1.5 3,537 + +0.4 3,537 + -1.3 3,537 + +0.9 3,537 + +1.0 3,537 + +1.7 3,538 - -1.9 3,538 - -0.1 3,538 - -3.9 3,538 - -1.0 3,538 - +0.1 3,538 - +0.9 3,538 - -2.0 3,538 - -3.4 3,538 - -0.8 3,538 - -1.0 3,538 - -0.0 3,538 - -0.3 3,541 + +0.9 3,541 + +1.8 3,541 + +0.5 3,541 + -1.1 3,542 - -0.1 3,542 - -0.5 3,542 - -3.5 3,542 - +2.8 3,571 + -0.0 3,572 - +0.5 3,871 + -1.8 3,871 + -0.5 3,871 + -1.2 3,871 + -0.3 3,871 + -0.6 3,872 - -1.2 3,872 - -2.5 3,872 - -1.9 3,872 - +0.7 3,872 - -0.0 3,872 - -1.0 4,081 + GFF4 0.51 -2.2 4,081 + GFF4 0.51 -0.8 4,081 + GFF4 0.51 -1.3 4,081 + GFF4 0.51 -1.3 4,081 + GFF4 0.51 +0.4 4,081 + GFF4 0.51 +0.0 4,082 - GFF4 0.52 -0.8 4,082 - GFF4 0.52 -1.8 4,082 - GFF4 0.52 +1.0 4,082 - GFF4 0.52 -0.8 4,082 - GFF4 0.52 +1.5 4,156 + GFF4 0.70 -2.2 4,156 + GFF4 0.70 -1.0 4,157 - GFF4 0.70 -1.9 4,157 - GFF4 0.70 -0.6 4,157 - GFF4 0.70 -1.5 4,157 - GFF4 0.70 -0.3 4,157 - GFF4 0.70 +1.5 4,250 + -2.7 4,250 + -1.5 4,250 + -2.3 4,250 + +0.1 4,250 + -0.5 4,250 + +0.5 4,250 + -2.4 4,250 + -1.6 4,250 + -1.7 4,250 + -0.2 4,251 - -2.9 4,251 - +0.5 4,251 - +1.0 4,251 - +1.1 4,251 - +0.8 4,251 - +0.2 4,296 + +0.5 4,296 + -1.0 4,296 + +2.1 4,296 + +0.1 4,297 - -3.8 4,297 - +1.0 4,297 - -2.2 4,297 - -1.8 4,548 + GFF5 0.25 -0.2 4,548 + GFF5 0.25 +0.0 4,549 - GFF5 0.25 -2.1 4,549 - GFF5 0.25 -1.8 4,641 + GFF5 0.34 -2.2 4,755 + GFF5 0.44 -0.8 4,755 + GFF5 0.44 +0.6 4,755 + GFF5 0.44 -0.5 4,756 - GFF5 0.45 -1.8 4,756 - GFF5 0.45 -0.9 4,756 - GFF5 0.45 -0.8 4,986 + GFF5 0.66 -2.4 5,010 + GFF5 0.68 -2.3 5,010 + GFF5 0.68 -1.6 5,011 - GFF5 0.68 +0.0 5,011 - GFF5 0.68 -0.0 5,028 + GFF5 0.70 +0.4 5,058 + GFF5 0.73 +1.7
Or see this region's nucleotide sequence