Experiment: Community=arabino-guar; Passage=4
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt GFF3955 and GFF3956 overlap by 4 nucleotides GFF3956 and GFF3957 are separated by 6 nucleotides GFF3957 and GFF3958 are separated by 12 nucleotides
GFF3955 - Histidinol-phosphate aminotransferase (EC 2.6.1.9), at 155,796 to 156,890
GFF3955
GFF3956 - no description, at 156,887 to 157,930
GFF3956
GFF3957 - Ribosome small subunit biogenesis RbfA-release protein RsgA, at 157,937 to 158,896
GFF3957
GFF3958 - Pterin-4-alpha-carbinolamine dehydratase (EC 4.2.1.96), at 158,909 to 159,268
GFF3958
Position (kb) 156
157
158 Strain fitness (log2 ratio) -4
-3
-2
-1
0
1
2
3 at 155.976 kb on + strand, within GFF3955 at 155.976 kb on + strand, within GFF3955 at 155.976 kb on + strand, within GFF3955 at 156.138 kb on + strand, within GFF3955 at 156.138 kb on + strand, within GFF3955 at 156.138 kb on + strand, within GFF3955 at 156.138 kb on + strand, within GFF3955 at 156.139 kb on - strand, within GFF3955 at 156.139 kb on - strand, within GFF3955 at 156.139 kb on - strand, within GFF3955 at 156.139 kb on - strand, within GFF3955 at 156.139 kb on - strand, within GFF3955 at 156.147 kb on + strand, within GFF3955 at 156.147 kb on + strand, within GFF3955 at 156.147 kb on + strand, within GFF3955 at 156.147 kb on + strand, within GFF3955 at 156.147 kb on + strand, within GFF3955 at 156.148 kb on - strand, within GFF3955 at 156.148 kb on - strand, within GFF3955 at 156.148 kb on - strand, within GFF3955 at 156.148 kb on - strand, within GFF3955 at 156.148 kb on - strand, within GFF3955 at 156.157 kb on - strand, within GFF3955 at 156.168 kb on + strand, within GFF3955 at 156.168 kb on + strand, within GFF3955 at 156.168 kb on + strand, within GFF3955 at 156.168 kb on + strand, within GFF3955 at 156.169 kb on - strand, within GFF3955 at 156.169 kb on - strand, within GFF3955 at 156.169 kb on - strand, within GFF3955 at 156.369 kb on + strand, within GFF3955 at 156.369 kb on + strand, within GFF3955 at 156.369 kb on + strand, within GFF3955 at 156.370 kb on - strand, within GFF3955 at 156.370 kb on - strand, within GFF3955 at 156.370 kb on - strand, within GFF3955 at 156.370 kb on - strand, within GFF3955 at 156.370 kb on - strand, within GFF3955 at 156.370 kb on - strand, within GFF3955 at 156.414 kb on + strand, within GFF3955 at 156.550 kb on + strand, within GFF3955 at 156.795 kb on - strand at 156.804 kb on + strand at 156.805 kb on - strand at 156.805 kb on - strand at 157.274 kb on + strand, within GFF3956 at 157.275 kb on - strand, within GFF3956 at 157.474 kb on - strand, within GFF3956 at 157.977 kb on + strand at 158.077 kb on - strand, within GFF3957 at 158.214 kb on + strand, within GFF3957 at 158.214 kb on + strand, within GFF3957 at 158.385 kb on + strand, within GFF3957 at 158.891 kb on - strand at 158.904 kb on + strand at 158.905 kb on - strand at 158.905 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction Community=arabino-guar; Passage=4 remove 155,976 + GFF3955 0.16 -1.4 155,976 + GFF3955 0.16 -1.8 155,976 + GFF3955 0.16 -1.4 156,138 + GFF3955 0.31 +2.0 156,138 + GFF3955 0.31 +0.6 156,138 + GFF3955 0.31 +0.9 156,138 + GFF3955 0.31 +0.5 156,139 - GFF3955 0.31 -3.0 156,139 - GFF3955 0.31 -0.3 156,139 - GFF3955 0.31 -0.1 156,139 - GFF3955 0.31 -0.1 156,139 - GFF3955 0.31 -2.8 156,147 + GFF3955 0.32 -0.9 156,147 + GFF3955 0.32 -1.4 156,147 + GFF3955 0.32 -0.2 156,147 + GFF3955 0.32 +1.1 156,147 + GFF3955 0.32 +0.1 156,148 - GFF3955 0.32 -2.0 156,148 - GFF3955 0.32 +0.2 156,148 - GFF3955 0.32 +0.9 156,148 - GFF3955 0.32 +1.0 156,148 - GFF3955 0.32 -0.5 156,157 - GFF3955 0.33 +1.8 156,168 + GFF3955 0.34 +0.9 156,168 + GFF3955 0.34 +3.3 156,168 + GFF3955 0.34 +1.2 156,168 + GFF3955 0.34 -0.4 156,169 - GFF3955 0.34 -0.9 156,169 - GFF3955 0.34 -1.6 156,169 - GFF3955 0.34 -1.1 156,369 + GFF3955 0.52 -0.6 156,369 + GFF3955 0.52 +2.1 156,369 + GFF3955 0.52 +1.9 156,370 - GFF3955 0.52 -0.4 156,370 - GFF3955 0.52 +1.8 156,370 - GFF3955 0.52 -1.4 156,370 - GFF3955 0.52 -1.1 156,370 - GFF3955 0.52 +0.5 156,370 - GFF3955 0.52 +0.7 156,414 + GFF3955 0.56 -2.0 156,550 + GFF3955 0.69 +1.6 156,795 - -3.6 156,804 + +1.2 156,805 - -0.4 156,805 - +1.4 157,274 + GFF3956 0.37 -0.8 157,275 - GFF3956 0.37 -1.2 157,474 - GFF3956 0.56 -2.6 157,977 + -0.6 158,077 - GFF3957 0.15 -3.8 158,214 + GFF3957 0.29 -2.0 158,214 + GFF3957 0.29 -3.1 158,385 + GFF3957 0.47 -2.7 158,891 - -2.0 158,904 + -1.9 158,905 - -0.3 158,905 - -1.2
Or see this region's nucleotide sequence