Strain Fitness in Variovorax sp. SCN45 around GFF3773

Experiment: Community=arabino-guar; Passage=4

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntGFF3771 and GFF3772 overlap by 4 nucleotidesGFF3772 and GFF3773 are separated by 10 nucleotidesGFF3773 and GFF3774 overlap by 4 nucleotides GFF3771 - no description, at 262,941 to 263,495 GFF3771 GFF3772 - Arginase (EC 3.5.3.1), at 263,492 to 264,412 GFF3772 GFF3773 - Fatty acid hydroxylase family (carotene hydroxylase/sterol desaturase), at 264,423 to 265,403 GFF3773 GFF3774 - hypothetical protein, at 265,400 to 266,797 GFF3774 Position (kb) 264 265 266Strain fitness (log2 ratio) -3 -2 -1 0 1 2 3 4 5at 263.445 kb on + strandat 263.445 kb on + strandat 263.446 kb on - strandat 263.454 kb on + strandat 263.454 kb on + strandat 263.454 kb on + strandat 263.454 kb on + strandat 263.454 kb on + strandat 263.454 kb on + strandat 263.454 kb on + strandat 263.455 kb on - strandat 263.455 kb on - strandat 263.455 kb on - strandat 263.455 kb on - strandat 263.493 kb on + strandat 263.655 kb on + strand, within GFF3772at 263.656 kb on - strand, within GFF3772at 264.380 kb on + strandat 264.658 kb on + strand, within GFF3773at 264.658 kb on + strand, within GFF3773at 264.658 kb on + strand, within GFF3773at 264.659 kb on - strand, within GFF3773at 264.836 kb on - strand, within GFF3773at 264.985 kb on + strand, within GFF3773at 264.985 kb on + strand, within GFF3773at 264.985 kb on + strand, within GFF3773at 264.985 kb on + strand, within GFF3773at 264.986 kb on - strand, within GFF3773at 264.986 kb on - strand, within GFF3773at 264.986 kb on - strand, within GFF3773at 264.993 kb on + strand, within GFF3773at 264.993 kb on + strand, within GFF3773at 264.993 kb on + strand, within GFF3773at 264.994 kb on - strand, within GFF3773at 264.994 kb on - strand, within GFF3773at 264.994 kb on - strand, within GFF3773at 264.994 kb on - strand, within GFF3773at 264.994 kb on - strand, within GFF3773at 265.258 kb on + strand, within GFF3773at 265.258 kb on + strand, within GFF3773at 265.258 kb on + strand, within GFF3773at 265.258 kb on + strand, within GFF3773at 265.258 kb on + strand, within GFF3773at 265.258 kb on + strand, within GFF3773at 265.259 kb on - strand, within GFF3773at 265.259 kb on - strand, within GFF3773at 265.259 kb on - strand, within GFF3773at 265.259 kb on - strand, within GFF3773at 265.331 kb on - strandat 265.457 kb on - strandat 265.578 kb on + strand, within GFF3774at 265.579 kb on - strand, within GFF3774at 265.797 kb on + strand, within GFF3774at 266.354 kb on + strand, within GFF3774at 266.355 kb on - strand, within GFF3774at 266.355 kb on - strand, within GFF3774

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Per-strain Table

Position Strand Gene LocusTag Fraction Community=arabino-guar; Passage=4
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263,445 + -0.4
263,445 + -1.8
263,446 - -2.3
263,454 + -3.3
263,454 + -1.6
263,454 + +1.0
263,454 + -1.3
263,454 + -2.8
263,454 + +1.8
263,454 + +0.5
263,455 - -2.3
263,455 - +2.3
263,455 - -0.1
263,455 - -3.3
263,493 + +0.8
263,655 + GFF3772 0.18 -0.1
263,656 - GFF3772 0.18 -0.5
264,380 + -2.7
264,658 + GFF3773 0.24 -1.6
264,658 + GFF3773 0.24 -0.1
264,658 + GFF3773 0.24 -0.4
264,659 - GFF3773 0.24 -1.6
264,836 - GFF3773 0.42 +2.6
264,985 + GFF3773 0.57 +0.6
264,985 + GFF3773 0.57 -0.0
264,985 + GFF3773 0.57 +3.0
264,985 + GFF3773 0.57 +1.6
264,986 - GFF3773 0.57 +0.6
264,986 - GFF3773 0.57 +1.9
264,986 - GFF3773 0.57 +0.4
264,993 + GFF3773 0.58 +0.6
264,993 + GFF3773 0.58 +0.6
264,993 + GFF3773 0.58 +1.7
264,994 - GFF3773 0.58 +1.3
264,994 - GFF3773 0.58 -0.1
264,994 - GFF3773 0.58 -2.3
264,994 - GFF3773 0.58 -0.8
264,994 - GFF3773 0.58 -2.1
265,258 + GFF3773 0.85 -1.9
265,258 + GFF3773 0.85 -2.4
265,258 + GFF3773 0.85 -0.8
265,258 + GFF3773 0.85 -3.0
265,258 + GFF3773 0.85 -0.8
265,258 + GFF3773 0.85 -0.1
265,259 - GFF3773 0.85 +1.0
265,259 - GFF3773 0.85 +0.1
265,259 - GFF3773 0.85 -2.4
265,259 - GFF3773 0.85 +4.9
265,331 - +1.5
265,457 - -1.7
265,578 + GFF3774 0.13 +1.3
265,579 - GFF3774 0.13 +2.0
265,797 + GFF3774 0.28 -2.3
266,354 + GFF3774 0.68 +0.6
266,355 - GFF3774 0.68 -0.8
266,355 - GFF3774 0.68 -2.3

Or see this region's nucleotide sequence