Strain Fitness in Variovorax sp. SCN45 around GFF3764

Experiment: Community=arabino-guar; Passage=4

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntGFF3762 and GFF3763 are separated by 56 nucleotidesGFF3763 and GFF3764 are separated by 6 nucleotidesGFF3764 and GFF3765 overlap by 4 nucleotidesGFF3765 and GFF3766 overlap by 11 nucleotides GFF3762 - hypothetical protein, at 254,406 to 255,440 GFF3762 GFF3763 - no description, at 255,497 to 256,015 GFF3763 GFF3764 - INTEGRAL MEMBRANE PROTEIN (Rhomboid family), at 256,022 to 256,753 GFF3764 GFF3765 - no description, at 256,750 to 257,751 GFF3765 GFF3766 - hypothetical protein, at 257,741 to 258,472 GFF3766 Position (kb) 256 257Strain fitness (log2 ratio) -4 -3 -2 -1 0 1 2 3at 255.108 kb on + strand, within GFF3762at 255.108 kb on + strand, within GFF3762at 255.109 kb on - strand, within GFF3762at 255.109 kb on - strand, within GFF3762at 255.456 kb on + strandat 255.457 kb on - strandat 255.524 kb on + strandat 255.525 kb on - strandat 255.677 kb on + strand, within GFF3763at 255.677 kb on + strand, within GFF3763at 255.678 kb on - strand, within GFF3763at 255.752 kb on + strand, within GFF3763at 255.752 kb on + strand, within GFF3763at 255.752 kb on + strand, within GFF3763at 255.752 kb on + strand, within GFF3763at 255.752 kb on + strand, within GFF3763at 255.752 kb on + strand, within GFF3763at 255.752 kb on + strand, within GFF3763at 255.753 kb on - strand, within GFF3763at 255.753 kb on - strand, within GFF3763at 255.753 kb on - strand, within GFF3763at 255.753 kb on - strand, within GFF3763at 255.753 kb on - strand, within GFF3763at 255.753 kb on - strand, within GFF3763at 255.753 kb on - strand, within GFF3763at 255.770 kb on + strand, within GFF3763at 255.770 kb on + strand, within GFF3763at 255.770 kb on + strand, within GFF3763at 255.771 kb on - strand, within GFF3763at 255.771 kb on - strand, within GFF3763at 255.771 kb on - strand, within GFF3763at 255.771 kb on - strand, within GFF3763at 256.040 kb on + strandat 256.040 kb on + strandat 256.040 kb on + strandat 256.040 kb on + strandat 256.041 kb on - strandat 256.041 kb on - strandat 256.041 kb on - strandat 256.041 kb on - strandat 256.041 kb on - strandat 256.112 kb on + strand, within GFF3764at 256.112 kb on + strand, within GFF3764at 256.112 kb on + strand, within GFF3764at 256.113 kb on - strand, within GFF3764at 256.211 kb on + strand, within GFF3764at 256.212 kb on - strand, within GFF3764at 256.212 kb on - strand, within GFF3764at 256.212 kb on - strand, within GFF3764at 256.212 kb on - strand, within GFF3764at 256.212 kb on - strand, within GFF3764at 256.232 kb on + strand, within GFF3764at 256.232 kb on + strand, within GFF3764at 256.233 kb on - strand, within GFF3764at 256.233 kb on - strand, within GFF3764at 256.233 kb on - strand, within GFF3764at 256.233 kb on - strand, within GFF3764at 256.233 kb on - strand, within GFF3764at 256.777 kb on + strandat 256.777 kb on + strandat 256.864 kb on + strand, within GFF3765at 256.909 kb on + strand, within GFF3765at 256.969 kb on + strand, within GFF3765at 256.969 kb on + strand, within GFF3765at 256.969 kb on + strand, within GFF3765at 256.969 kb on + strand, within GFF3765at 256.969 kb on + strand, within GFF3765at 256.969 kb on + strand, within GFF3765at 256.969 kb on + strand, within GFF3765at 256.970 kb on - strand, within GFF3765at 256.985 kb on - strand, within GFF3765at 257.053 kb on + strand, within GFF3765at 257.053 kb on + strand, within GFF3765at 257.053 kb on + strand, within GFF3765at 257.053 kb on + strand, within GFF3765at 257.054 kb on - strand, within GFF3765at 257.054 kb on - strand, within GFF3765at 257.179 kb on + strand, within GFF3765at 257.179 kb on + strand, within GFF3765at 257.179 kb on + strand, within GFF3765at 257.180 kb on - strand, within GFF3765at 257.180 kb on - strand, within GFF3765at 257.180 kb on - strand, within GFF3765at 257.180 kb on - strand, within GFF3765at 257.180 kb on - strand, within GFF3765at 257.180 kb on - strand, within GFF3765at 257.248 kb on + strand, within GFF3765at 257.248 kb on + strand, within GFF3765at 257.248 kb on + strand, within GFF3765at 257.248 kb on + strand, within GFF3765at 257.248 kb on + strand, within GFF3765at 257.249 kb on - strand, within GFF3765at 257.249 kb on - strand, within GFF3765at 257.249 kb on - strand, within GFF3765at 257.365 kb on + strand, within GFF3765at 257.366 kb on - strand, within GFF3765at 257.476 kb on + strand, within GFF3765at 257.554 kb on + strand, within GFF3765at 257.555 kb on - strand, within GFF3765at 257.555 kb on - strand, within GFF3765at 257.592 kb on - strand, within GFF3765at 257.638 kb on + strand, within GFF3765at 257.639 kb on - strand, within GFF3765at 257.677 kb on + strandat 257.678 kb on - strandat 257.678 kb on - strandat 257.678 kb on - strandat 257.678 kb on - strandat 257.678 kb on - strandat 257.678 kb on - strandat 257.678 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction Community=arabino-guar; Passage=4
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255,108 + GFF3762 0.68 -2.3
255,108 + GFF3762 0.68 -0.2
255,109 - GFF3762 0.68 +1.1
255,109 - GFF3762 0.68 +1.2
255,456 + -3.7
255,457 - +0.6
255,524 + -0.6
255,525 - +0.3
255,677 + GFF3763 0.35 -3.0
255,677 + GFF3763 0.35 -0.9
255,678 - GFF3763 0.35 -2.6
255,752 + GFF3763 0.49 +2.9
255,752 + GFF3763 0.49 +0.1
255,752 + GFF3763 0.49 -3.8
255,752 + GFF3763 0.49 -0.8
255,752 + GFF3763 0.49 -2.1
255,752 + GFF3763 0.49 +0.3
255,752 + GFF3763 0.49 +3.3
255,753 - GFF3763 0.49 +0.7
255,753 - GFF3763 0.49 +1.3
255,753 - GFF3763 0.49 -1.0
255,753 - GFF3763 0.49 -2.8
255,753 - GFF3763 0.49 -0.8
255,753 - GFF3763 0.49 +1.2
255,753 - GFF3763 0.49 -1.3
255,770 + GFF3763 0.53 -1.4
255,770 + GFF3763 0.53 +0.6
255,770 + GFF3763 0.53 -0.6
255,771 - GFF3763 0.53 -1.1
255,771 - GFF3763 0.53 -0.4
255,771 - GFF3763 0.53 -1.5
255,771 - GFF3763 0.53 -1.9
256,040 + +0.3
256,040 + -3.4
256,040 + +1.9
256,040 + -0.1
256,041 - +0.7
256,041 - -1.7
256,041 - +0.5
256,041 - +2.0
256,041 - +1.7
256,112 + GFF3764 0.12 -1.2
256,112 + GFF3764 0.12 -1.5
256,112 + GFF3764 0.12 -0.8
256,113 - GFF3764 0.12 +2.1
256,211 + GFF3764 0.26 -1.4
256,212 - GFF3764 0.26 -2.6
256,212 - GFF3764 0.26 +0.4
256,212 - GFF3764 0.26 +1.2
256,212 - GFF3764 0.26 -2.6
256,212 - GFF3764 0.26 +0.6
256,232 + GFF3764 0.29 +1.2
256,232 + GFF3764 0.29 +0.3
256,233 - GFF3764 0.29 -1.5
256,233 - GFF3764 0.29 -1.7
256,233 - GFF3764 0.29 -3.8
256,233 - GFF3764 0.29 -1.3
256,233 - GFF3764 0.29 +1.2
256,777 + +1.4
256,777 + +2.2
256,864 + GFF3765 0.11 -1.1
256,909 + GFF3765 0.16 -0.6
256,969 + GFF3765 0.22 +1.6
256,969 + GFF3765 0.22 -2.3
256,969 + GFF3765 0.22 +2.2
256,969 + GFF3765 0.22 +1.5
256,969 + GFF3765 0.22 -3.7
256,969 + GFF3765 0.22 -2.1
256,969 + GFF3765 0.22 -1.7
256,970 - GFF3765 0.22 -1.3
256,985 - GFF3765 0.23 -2.4
257,053 + GFF3765 0.30 +1.5
257,053 + GFF3765 0.30 +1.2
257,053 + GFF3765 0.30 -2.2
257,053 + GFF3765 0.30 +0.5
257,054 - GFF3765 0.30 -1.2
257,054 - GFF3765 0.30 -2.1
257,179 + GFF3765 0.43 -0.6
257,179 + GFF3765 0.43 -1.7
257,179 + GFF3765 0.43 -0.2
257,180 - GFF3765 0.43 +2.2
257,180 - GFF3765 0.43 +1.9
257,180 - GFF3765 0.43 -0.8
257,180 - GFF3765 0.43 +2.5
257,180 - GFF3765 0.43 -0.1
257,180 - GFF3765 0.43 +0.6
257,248 + GFF3765 0.50 +1.9
257,248 + GFF3765 0.50 -3.4
257,248 + GFF3765 0.50 -0.7
257,248 + GFF3765 0.50 -3.1
257,248 + GFF3765 0.50 -1.6
257,249 - GFF3765 0.50 -1.5
257,249 - GFF3765 0.50 -1.5
257,249 - GFF3765 0.50 +0.6
257,365 + GFF3765 0.61 +1.7
257,366 - GFF3765 0.61 -2.0
257,476 + GFF3765 0.72 -2.3
257,554 + GFF3765 0.80 -3.4
257,555 - GFF3765 0.80 +1.2
257,555 - GFF3765 0.80 +1.0
257,592 - GFF3765 0.84 -0.4
257,638 + GFF3765 0.89 -3.2
257,639 - GFF3765 0.89 -0.1
257,677 + +0.0
257,678 - +0.8
257,678 - -2.5
257,678 - +0.1
257,678 - +1.7
257,678 - -1.3
257,678 - -2.8
257,678 - +0.6

Or see this region's nucleotide sequence