Experiment: Community=arabino-guar; Passage=4
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt GFF3734 and GFF3735 overlap by 4 nucleotides GFF3735 and GFF3736 are separated by 46 nucleotides GFF3736 and GFF3737 are separated by 85 nucleotides GFF3737 and GFF3738 overlap by 4 nucleotides
GFF3734 - RNA:NAD 2'-phosphotransferase, at 231,596 to 232,132
GFF3734
GFF3735 - 16S rRNA (cytidine(1402)-2'-O)-methyltransferase (EC 2.1.1.198), at 232,129 to 233,076
GFF3735
GFF3736 - UPF0102 protein YraN, at 233,123 to 233,491
GFF3736
GFF3737 - DnaA initiator-associating protein DiaA, at 233,577 to 234,221
GFF3737
GFF3738 - Uncharacterized protein YraP, at 234,218 to 235,030
GFF3738
Position (kb) 233
234 Strain fitness (log2 ratio) -3
-2
-1
0
1
2
3 at 232.172 kb on + strand at 232.172 kb on + strand at 232.172 kb on + strand at 232.172 kb on + strand at 232.172 kb on + strand at 232.172 kb on + strand at 232.172 kb on + strand at 232.173 kb on - strand at 232.173 kb on - strand at 232.198 kb on + strand at 232.199 kb on - strand at 232.199 kb on - strand at 232.428 kb on + strand, within GFF3735 at 232.754 kb on + strand, within GFF3735 at 232.754 kb on + strand, within GFF3735 at 232.985 kb on + strand at 232.985 kb on + strand at 232.985 kb on + strand at 232.986 kb on - strand at 232.986 kb on - strand at 232.986 kb on - strand at 232.986 kb on - strand at 232.986 kb on - strand at 232.986 kb on - strand at 233.223 kb on - strand, within GFF3736 at 233.393 kb on + strand, within GFF3736 at 233.393 kb on + strand, within GFF3736 at 233.394 kb on - strand, within GFF3736 at 233.564 kb on - strand at 233.564 kb on - strand at 233.564 kb on - strand at 233.628 kb on + strand at 233.629 kb on - strand at 233.629 kb on - strand at 233.629 kb on - strand at 233.629 kb on - strand at 233.629 kb on - strand at 234.194 kb on - strand at 234.194 kb on - strand at 234.455 kb on + strand, within GFF3738 at 234.455 kb on + strand, within GFF3738 at 234.455 kb on + strand, within GFF3738 at 234.455 kb on + strand, within GFF3738 at 234.455 kb on + strand, within GFF3738 at 234.455 kb on + strand, within GFF3738 at 234.455 kb on + strand, within GFF3738 at 234.455 kb on + strand, within GFF3738 at 234.455 kb on + strand, within GFF3738 at 234.455 kb on + strand, within GFF3738 at 234.455 kb on + strand, within GFF3738 at 234.455 kb on + strand, within GFF3738 at 234.456 kb on - strand, within GFF3738 at 234.456 kb on - strand, within GFF3738 at 234.456 kb on - strand, within GFF3738 at 234.456 kb on - strand, within GFF3738 at 234.456 kb on - strand, within GFF3738 at 234.456 kb on - strand, within GFF3738 at 234.456 kb on - strand, within GFF3738 at 234.456 kb on - strand, within GFF3738 at 234.456 kb on - strand, within GFF3738 at 234.456 kb on - strand, within GFF3738 at 234.456 kb on - strand, within GFF3738 at 234.456 kb on - strand, within GFF3738 at 234.473 kb on + strand, within GFF3738 at 234.473 kb on + strand, within GFF3738 at 234.473 kb on + strand, within GFF3738 at 234.473 kb on + strand, within GFF3738 at 234.474 kb on - strand, within GFF3738 at 234.474 kb on - strand, within GFF3738 at 234.474 kb on - strand, within GFF3738 at 234.474 kb on - strand, within GFF3738
Per-strain Table
Position Strand Gene LocusTag Fraction Community=arabino-guar; Passage=4 remove 232,172 + +0.2 232,172 + +1.9 232,172 + +0.2 232,172 + -2.1 232,172 + -1.7 232,172 + +1.2 232,172 + +3.2 232,173 - -1.9 232,173 - -0.4 232,198 + -1.0 232,199 - +1.3 232,199 - +0.3 232,428 + GFF3735 0.32 -0.5 232,754 + GFF3735 0.66 -0.4 232,754 + GFF3735 0.66 -1.0 232,985 + -0.8 232,985 + -0.2 232,985 + -0.8 232,986 - -1.7 232,986 - -0.4 232,986 - +0.5 232,986 - +2.2 232,986 - +0.2 232,986 - -3.3 233,223 - GFF3736 0.27 +2.4 233,393 + GFF3736 0.73 +1.8 233,393 + GFF3736 0.73 -2.1 233,394 - GFF3736 0.73 -2.8 233,564 - -1.4 233,564 - +0.9 233,564 - -0.7 233,628 + +0.6 233,629 - -3.7 233,629 - -2.4 233,629 - +0.9 233,629 - -1.7 233,629 - -1.9 234,194 - -3.6 234,194 - -1.8 234,455 + GFF3738 0.29 +1.6 234,455 + GFF3738 0.29 -3.5 234,455 + GFF3738 0.29 -0.4 234,455 + GFF3738 0.29 -1.4 234,455 + GFF3738 0.29 -1.4 234,455 + GFF3738 0.29 -0.2 234,455 + GFF3738 0.29 -1.3 234,455 + GFF3738 0.29 -0.4 234,455 + GFF3738 0.29 +2.4 234,455 + GFF3738 0.29 -2.6 234,455 + GFF3738 0.29 -0.8 234,455 + GFF3738 0.29 +0.4 234,456 - GFF3738 0.29 -2.4 234,456 - GFF3738 0.29 -1.4 234,456 - GFF3738 0.29 +0.2 234,456 - GFF3738 0.29 -0.0 234,456 - GFF3738 0.29 -2.3 234,456 - GFF3738 0.29 +0.1 234,456 - GFF3738 0.29 +1.8 234,456 - GFF3738 0.29 -1.1 234,456 - GFF3738 0.29 -2.0 234,456 - GFF3738 0.29 +1.5 234,456 - GFF3738 0.29 -2.0 234,456 - GFF3738 0.29 +0.7 234,473 + GFF3738 0.31 -0.6 234,473 + GFF3738 0.31 -2.0 234,473 + GFF3738 0.31 +0.5 234,473 + GFF3738 0.31 +0.6 234,474 - GFF3738 0.31 -2.3 234,474 - GFF3738 0.31 +0.2 234,474 - GFF3738 0.31 -3.2 234,474 - GFF3738 0.31 -0.4
Or see this region's nucleotide sequence