Strain Fitness in Variovorax sp. SCN45 around GFF3598

Experiment: Community=arabino-guar; Passage=4

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntGFF3596 and GFF3597 overlap by 4 nucleotidesGFF3597 and GFF3598 are separated by 92 nucleotidesGFF3598 and GFF3599 are separated by 177 nucleotidesGFF3599 and GFF3600 are separated by 90 nucleotides GFF3596 - TRAP-type C4-dicarboxylate transport system, large permease component, at 108,933 to 110,819 GFF3596 GFF3597 - TRAP-type C4-dicarboxylate transport system, small permease component, at 110,816 to 111,445 GFF3597 GFF3598 - TRAP-type C4-dicarboxylate transport system, periplasmic component, at 111,538 to 112,653 GFF3598 GFF3599 - Rhodanese-related sulfurtransferase, at 112,831 to 113,241 GFF3599 GFF3600 - Pantothenate kinase type III, CoaX-like (EC 2.7.1.33), at 113,332 to 114,111 GFF3600 Position (kb) 111 112 113Strain fitness (log2 ratio) -4 -3 -2 -1 0 1 2 3 4at 110.614 kb on + strand, within GFF3596at 111.036 kb on + strand, within GFF3597at 111.036 kb on + strand, within GFF3597at 111.036 kb on + strand, within GFF3597at 111.036 kb on + strand, within GFF3597at 111.036 kb on + strand, within GFF3597at 111.036 kb on + strand, within GFF3597at 111.037 kb on - strand, within GFF3597at 111.037 kb on - strand, within GFF3597at 111.037 kb on - strand, within GFF3597at 111.037 kb on - strand, within GFF3597at 111.037 kb on - strand, within GFF3597at 111.048 kb on + strand, within GFF3597at 111.048 kb on + strand, within GFF3597at 111.049 kb on - strand, within GFF3597at 111.049 kb on - strand, within GFF3597at 111.049 kb on - strand, within GFF3597at 111.108 kb on + strand, within GFF3597at 111.108 kb on + strand, within GFF3597at 111.109 kb on - strand, within GFF3597at 111.109 kb on - strand, within GFF3597at 111.109 kb on - strand, within GFF3597at 111.162 kb on + strand, within GFF3597at 111.162 kb on + strand, within GFF3597at 111.162 kb on + strand, within GFF3597at 111.162 kb on + strand, within GFF3597at 111.162 kb on + strand, within GFF3597at 111.162 kb on + strand, within GFF3597at 111.162 kb on + strand, within GFF3597at 111.162 kb on + strand, within GFF3597at 111.163 kb on - strand, within GFF3597at 111.163 kb on - strand, within GFF3597at 111.163 kb on - strand, within GFF3597at 111.163 kb on - strand, within GFF3597at 111.163 kb on - strand, within GFF3597at 111.163 kb on - strand, within GFF3597at 111.163 kb on - strand, within GFF3597at 111.163 kb on - strand, within GFF3597at 111.163 kb on - strand, within GFF3597at 111.163 kb on - strand, within GFF3597at 111.210 kb on + strand, within GFF3597at 111.211 kb on - strand, within GFF3597at 111.253 kb on - strand, within GFF3597at 111.253 kb on - strand, within GFF3597at 111.253 kb on - strand, within GFF3597at 111.282 kb on + strand, within GFF3597at 111.283 kb on - strand, within GFF3597at 111.334 kb on - strand, within GFF3597at 111.566 kb on + strandat 111.566 kb on + strandat 111.566 kb on + strandat 111.575 kb on + strandat 111.575 kb on + strandat 111.575 kb on + strandat 111.575 kb on + strandat 111.575 kb on + strandat 111.575 kb on + strandat 111.575 kb on + strandat 111.575 kb on + strandat 111.575 kb on + strandat 111.575 kb on + strandat 111.576 kb on - strandat 111.576 kb on - strandat 111.599 kb on + strandat 111.746 kb on + strand, within GFF3598at 111.746 kb on + strand, within GFF3598at 111.746 kb on + strand, within GFF3598at 111.747 kb on - strand, within GFF3598at 111.747 kb on - strand, within GFF3598at 111.779 kb on + strand, within GFF3598at 111.779 kb on + strand, within GFF3598at 111.779 kb on + strand, within GFF3598at 111.779 kb on + strand, within GFF3598at 111.779 kb on + strand, within GFF3598at 111.779 kb on + strand, within GFF3598at 111.779 kb on + strand, within GFF3598at 111.779 kb on + strand, within GFF3598at 111.779 kb on + strand, within GFF3598at 111.780 kb on - strand, within GFF3598at 111.780 kb on - strand, within GFF3598at 111.780 kb on - strand, within GFF3598at 111.843 kb on - strand, within GFF3598at 112.199 kb on + strand, within GFF3598at 112.199 kb on + strand, within GFF3598at 112.199 kb on + strand, within GFF3598at 112.199 kb on + strand, within GFF3598at 112.199 kb on + strand, within GFF3598at 112.199 kb on + strand, within GFF3598at 112.199 kb on + strand, within GFF3598at 112.199 kb on + strand, within GFF3598at 112.199 kb on + strand, within GFF3598at 112.200 kb on - strand, within GFF3598at 112.200 kb on - strand, within GFF3598at 112.200 kb on - strand, within GFF3598at 112.200 kb on - strand, within GFF3598at 112.229 kb on + strand, within GFF3598at 112.229 kb on + strand, within GFF3598at 112.229 kb on + strand, within GFF3598at 112.229 kb on + strand, within GFF3598at 112.230 kb on - strand, within GFF3598at 112.230 kb on - strand, within GFF3598at 112.230 kb on - strand, within GFF3598at 112.230 kb on - strand, within GFF3598at 112.230 kb on - strand, within GFF3598at 112.230 kb on - strand, within GFF3598at 112.230 kb on - strand, within GFF3598at 112.262 kb on + strand, within GFF3598at 112.262 kb on + strand, within GFF3598at 112.262 kb on + strand, within GFF3598at 112.262 kb on + strand, within GFF3598at 112.263 kb on - strand, within GFF3598at 112.263 kb on - strand, within GFF3598at 112.263 kb on - strand, within GFF3598at 112.346 kb on + strand, within GFF3598at 112.347 kb on - strand, within GFF3598at 112.490 kb on + strand, within GFF3598at 112.491 kb on - strand, within GFF3598at 112.491 kb on - strand, within GFF3598at 112.503 kb on - strand, within GFF3598at 112.583 kb on + strandat 112.711 kb on + strandat 112.711 kb on + strandat 112.712 kb on - strandat 112.712 kb on - strandat 112.712 kb on - strandat 112.712 kb on - strandat 112.858 kb on + strandat 112.858 kb on + strandat 112.859 kb on - strandat 112.859 kb on - strandat 112.859 kb on - strandat 112.960 kb on + strand, within GFF3599at 112.961 kb on - strand, within GFF3599at 112.961 kb on - strand, within GFF3599at 113.140 kb on + strand, within GFF3599at 113.140 kb on + strand, within GFF3599at 113.140 kb on + strand, within GFF3599at 113.140 kb on + strand, within GFF3599at 113.140 kb on + strand, within GFF3599at 113.140 kb on + strand, within GFF3599at 113.140 kb on + strand, within GFF3599at 113.140 kb on + strand, within GFF3599at 113.140 kb on + strand, within GFF3599at 113.140 kb on + strand, within GFF3599at 113.140 kb on + strand, within GFF3599at 113.140 kb on + strand, within GFF3599at 113.140 kb on + strand, within GFF3599at 113.140 kb on + strand, within GFF3599at 113.140 kb on + strand, within GFF3599at 113.140 kb on + strand, within GFF3599at 113.141 kb on - strand, within GFF3599at 113.141 kb on - strand, within GFF3599at 113.141 kb on - strand, within GFF3599at 113.141 kb on - strand, within GFF3599at 113.141 kb on - strand, within GFF3599at 113.141 kb on - strand, within GFF3599at 113.141 kb on - strand, within GFF3599at 113.141 kb on - strand, within GFF3599at 113.141 kb on - strand, within GFF3599at 113.141 kb on - strand, within GFF3599at 113.141 kb on - strand, within GFF3599at 113.141 kb on - strand, within GFF3599at 113.141 kb on - strand, within GFF3599at 113.141 kb on - strand, within GFF3599at 113.141 kb on - strand, within GFF3599at 113.322 kb on - strandat 113.368 kb on - strandat 113.390 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction Community=arabino-guar; Passage=4
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110,614 + GFF3596 0.89 -1.8
111,036 + GFF3597 0.35 +0.5
111,036 + GFF3597 0.35 -2.1
111,036 + GFF3597 0.35 +2.2
111,036 + GFF3597 0.35 +0.2
111,036 + GFF3597 0.35 -0.2
111,036 + GFF3597 0.35 +2.2
111,037 - GFF3597 0.35 -0.8
111,037 - GFF3597 0.35 +1.0
111,037 - GFF3597 0.35 +0.4
111,037 - GFF3597 0.35 -1.8
111,037 - GFF3597 0.35 +2.0
111,048 + GFF3597 0.37 -2.7
111,048 + GFF3597 0.37 -1.8
111,049 - GFF3597 0.37 +2.0
111,049 - GFF3597 0.37 -1.7
111,049 - GFF3597 0.37 -2.2
111,108 + GFF3597 0.46 +1.6
111,108 + GFF3597 0.46 -1.1
111,109 - GFF3597 0.47 -0.1
111,109 - GFF3597 0.47 -1.9
111,109 - GFF3597 0.47 -0.8
111,162 + GFF3597 0.55 -0.6
111,162 + GFF3597 0.55 -2.0
111,162 + GFF3597 0.55 -2.4
111,162 + GFF3597 0.55 -1.8
111,162 + GFF3597 0.55 -0.1
111,162 + GFF3597 0.55 +0.2
111,162 + GFF3597 0.55 -0.2
111,162 + GFF3597 0.55 -1.0
111,163 - GFF3597 0.55 +0.4
111,163 - GFF3597 0.55 -0.0
111,163 - GFF3597 0.55 +3.0
111,163 - GFF3597 0.55 +1.2
111,163 - GFF3597 0.55 -0.5
111,163 - GFF3597 0.55 -1.1
111,163 - GFF3597 0.55 -0.4
111,163 - GFF3597 0.55 +4.0
111,163 - GFF3597 0.55 -1.3
111,163 - GFF3597 0.55 -1.4
111,210 + GFF3597 0.63 -1.3
111,211 - GFF3597 0.63 -1.2
111,253 - GFF3597 0.69 +1.2
111,253 - GFF3597 0.69 -1.7
111,253 - GFF3597 0.69 -0.0
111,282 + GFF3597 0.74 +2.2
111,283 - GFF3597 0.74 -2.4
111,334 - GFF3597 0.82 +1.2
111,566 + -2.9
111,566 + -1.1
111,566 + -0.1
111,575 + -1.0
111,575 + -0.2
111,575 + -0.1
111,575 + -0.5
111,575 + +1.7
111,575 + -1.3
111,575 + -1.5
111,575 + +1.5
111,575 + +0.4
111,575 + -1.0
111,576 - +3.3
111,576 - +1.4
111,599 + +2.2
111,746 + GFF3598 0.19 +0.3
111,746 + GFF3598 0.19 -0.3
111,746 + GFF3598 0.19 -1.6
111,747 - GFF3598 0.19 -0.6
111,747 - GFF3598 0.19 -1.4
111,779 + GFF3598 0.22 -2.2
111,779 + GFF3598 0.22 -0.0
111,779 + GFF3598 0.22 +0.7
111,779 + GFF3598 0.22 +0.1
111,779 + GFF3598 0.22 -2.2
111,779 + GFF3598 0.22 -3.0
111,779 + GFF3598 0.22 -0.1
111,779 + GFF3598 0.22 -2.2
111,779 + GFF3598 0.22 +1.4
111,780 - GFF3598 0.22 -0.8
111,780 - GFF3598 0.22 -2.4
111,780 - GFF3598 0.22 +1.3
111,843 - GFF3598 0.27 +2.2
112,199 + GFF3598 0.59 -0.3
112,199 + GFF3598 0.59 +1.3
112,199 + GFF3598 0.59 +0.8
112,199 + GFF3598 0.59 +1.1
112,199 + GFF3598 0.59 -0.8
112,199 + GFF3598 0.59 +0.6
112,199 + GFF3598 0.59 -2.3
112,199 + GFF3598 0.59 -0.5
112,199 + GFF3598 0.59 +0.3
112,200 - GFF3598 0.59 +0.2
112,200 - GFF3598 0.59 -3.0
112,200 - GFF3598 0.59 -1.1
112,200 - GFF3598 0.59 -0.7
112,229 + GFF3598 0.62 +1.0
112,229 + GFF3598 0.62 +1.9
112,229 + GFF3598 0.62 +0.5
112,229 + GFF3598 0.62 -1.6
112,230 - GFF3598 0.62 -2.4
112,230 - GFF3598 0.62 -1.5
112,230 - GFF3598 0.62 -1.4
112,230 - GFF3598 0.62 -0.4
112,230 - GFF3598 0.62 -2.3
112,230 - GFF3598 0.62 -0.8
112,230 - GFF3598 0.62 -0.6
112,262 + GFF3598 0.65 -1.7
112,262 + GFF3598 0.65 +1.0
112,262 + GFF3598 0.65 -0.9
112,262 + GFF3598 0.65 +0.2
112,263 - GFF3598 0.65 +2.0
112,263 - GFF3598 0.65 +0.4
112,263 - GFF3598 0.65 +0.0
112,346 + GFF3598 0.72 -2.8
112,347 - GFF3598 0.72 -0.1
112,490 + GFF3598 0.85 -1.7
112,491 - GFF3598 0.85 +0.8
112,491 - GFF3598 0.85 -1.1
112,503 - GFF3598 0.86 +0.6
112,583 + -0.4
112,711 + -0.6
112,711 + +0.5
112,712 - +0.2
112,712 - +0.1
112,712 - -3.6
112,712 - -2.0
112,858 + -0.7
112,858 + -3.5
112,859 - -1.5
112,859 - -2.5
112,859 - -2.4
112,960 + GFF3599 0.31 -1.1
112,961 - GFF3599 0.32 -3.9
112,961 - GFF3599 0.32 -2.8
113,140 + GFF3599 0.75 -1.1
113,140 + GFF3599 0.75 +1.5
113,140 + GFF3599 0.75 +1.1
113,140 + GFF3599 0.75 -4.0
113,140 + GFF3599 0.75 -0.3
113,140 + GFF3599 0.75 +0.4
113,140 + GFF3599 0.75 -0.3
113,140 + GFF3599 0.75 -0.9
113,140 + GFF3599 0.75 -0.8
113,140 + GFF3599 0.75 +0.8
113,140 + GFF3599 0.75 -1.0
113,140 + GFF3599 0.75 -0.2
113,140 + GFF3599 0.75 -2.8
113,140 + GFF3599 0.75 -1.6
113,140 + GFF3599 0.75 +2.7
113,140 + GFF3599 0.75 -2.9
113,141 - GFF3599 0.75 +0.4
113,141 - GFF3599 0.75 -2.4
113,141 - GFF3599 0.75 -0.1
113,141 - GFF3599 0.75 +0.9
113,141 - GFF3599 0.75 -2.3
113,141 - GFF3599 0.75 -0.6
113,141 - GFF3599 0.75 +1.0
113,141 - GFF3599 0.75 -0.6
113,141 - GFF3599 0.75 -2.6
113,141 - GFF3599 0.75 -0.4
113,141 - GFF3599 0.75 -0.7
113,141 - GFF3599 0.75 +1.0
113,141 - GFF3599 0.75 +0.4
113,141 - GFF3599 0.75 -0.4
113,141 - GFF3599 0.75 +3.6
113,322 - -2.5
113,368 - -1.3
113,390 - -0.8

Or see this region's nucleotide sequence