Experiment: Community=arabino-guar; Passage=4
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt GFF3529 and GFF3530 are separated by 83 nucleotides GFF3530 and GFF3531 overlap by 34 nucleotides
GFF3529 - Nicotinamide-nucleotide adenylyltransferase, NadM family (EC 2.7.7.1) / ADP-ribose pyrophosphatase (EC 3.6.1.13), at 35,334 to 36,413
GFF3529
GFF3530 - Pseudouridine synthase, at 36,497 to 37,330
GFF3530
GFF3531 - hypothetical protein, at 37,297 to 38,418
GFF3531
Position (kb) 36
37
38 Strain fitness (log2 ratio) -4
-3
-2
-1
0
1
2
3 at 35.770 kb on + strand, within GFF3529 at 35.770 kb on + strand, within GFF3529 at 35.770 kb on + strand, within GFF3529 at 35.771 kb on - strand, within GFF3529 at 35.771 kb on - strand, within GFF3529 at 35.771 kb on - strand, within GFF3529 at 35.771 kb on - strand, within GFF3529 at 35.771 kb on - strand, within GFF3529 at 35.797 kb on + strand, within GFF3529 at 35.803 kb on + strand, within GFF3529 at 35.803 kb on + strand, within GFF3529 at 35.804 kb on - strand, within GFF3529 at 35.804 kb on - strand, within GFF3529 at 35.815 kb on + strand, within GFF3529 at 35.816 kb on - strand, within GFF3529 at 35.854 kb on + strand, within GFF3529 at 35.855 kb on - strand, within GFF3529 at 35.947 kb on + strand, within GFF3529 at 35.947 kb on + strand, within GFF3529 at 35.947 kb on + strand, within GFF3529 at 35.947 kb on + strand, within GFF3529 at 35.948 kb on - strand, within GFF3529 at 36.028 kb on + strand, within GFF3529 at 36.028 kb on + strand, within GFF3529 at 36.028 kb on + strand, within GFF3529 at 36.029 kb on - strand, within GFF3529 at 36.029 kb on - strand, within GFF3529 at 36.031 kb on + strand, within GFF3529 at 36.031 kb on + strand, within GFF3529 at 36.031 kb on + strand, within GFF3529 at 36.031 kb on + strand, within GFF3529 at 36.032 kb on - strand, within GFF3529 at 36.032 kb on - strand, within GFF3529 at 36.032 kb on - strand, within GFF3529 at 36.032 kb on - strand, within GFF3529 at 36.032 kb on - strand, within GFF3529 at 36.154 kb on + strand, within GFF3529 at 36.154 kb on + strand, within GFF3529 at 36.154 kb on + strand, within GFF3529 at 36.155 kb on - strand, within GFF3529 at 36.382 kb on + strand at 36.382 kb on + strand at 36.383 kb on - strand at 36.383 kb on - strand at 36.383 kb on - strand at 36.388 kb on + strand at 36.388 kb on + strand at 36.389 kb on - strand at 36.389 kb on - strand at 36.464 kb on - strand at 36.965 kb on + strand, within GFF3530 at 36.965 kb on + strand, within GFF3530 at 36.965 kb on + strand, within GFF3530 at 36.966 kb on - strand, within GFF3530 at 36.966 kb on - strand, within GFF3530 at 36.983 kb on + strand, within GFF3530 at 36.983 kb on + strand, within GFF3530 at 36.984 kb on - strand, within GFF3530 at 37.453 kb on + strand, within GFF3531 at 37.453 kb on + strand, within GFF3531 at 37.453 kb on + strand, within GFF3531 at 37.453 kb on + strand, within GFF3531 at 37.454 kb on - strand, within GFF3531 at 37.931 kb on - strand, within GFF3531 at 37.931 kb on - strand, within GFF3531
Per-strain Table
Position Strand Gene LocusTag Fraction Community=arabino-guar; Passage=4 remove 35,770 + GFF3529 0.40 +2.8 35,770 + GFF3529 0.40 +0.3 35,770 + GFF3529 0.40 -3.4 35,771 - GFF3529 0.40 -2.9 35,771 - GFF3529 0.40 -0.4 35,771 - GFF3529 0.40 +2.2 35,771 - GFF3529 0.40 -0.1 35,771 - GFF3529 0.40 +1.2 35,797 + GFF3529 0.43 +0.2 35,803 + GFF3529 0.43 -0.1 35,803 + GFF3529 0.43 +1.2 35,804 - GFF3529 0.44 +0.2 35,804 - GFF3529 0.44 +0.6 35,815 + GFF3529 0.45 -0.1 35,816 - GFF3529 0.45 -0.6 35,854 + GFF3529 0.48 -0.6 35,855 - GFF3529 0.48 -0.4 35,947 + GFF3529 0.57 -3.9 35,947 + GFF3529 0.57 -1.9 35,947 + GFF3529 0.57 -0.4 35,947 + GFF3529 0.57 -1.6 35,948 - GFF3529 0.57 +0.6 36,028 + GFF3529 0.64 +1.3 36,028 + GFF3529 0.64 -0.4 36,028 + GFF3529 0.64 -2.3 36,029 - GFF3529 0.64 -2.0 36,029 - GFF3529 0.64 -3.5 36,031 + GFF3529 0.65 -1.0 36,031 + GFF3529 0.65 -1.0 36,031 + GFF3529 0.65 -1.4 36,031 + GFF3529 0.65 -3.6 36,032 - GFF3529 0.65 -2.7 36,032 - GFF3529 0.65 -0.1 36,032 - GFF3529 0.65 -0.6 36,032 - GFF3529 0.65 -0.8 36,032 - GFF3529 0.65 -1.4 36,154 + GFF3529 0.76 -1.9 36,154 + GFF3529 0.76 -3.4 36,154 + GFF3529 0.76 -2.7 36,155 - GFF3529 0.76 -1.6 36,382 + +0.8 36,382 + +1.1 36,383 - -3.1 36,383 - +3.3 36,383 - -1.1 36,388 + -0.4 36,388 + -2.3 36,389 - -1.4 36,389 - -0.3 36,464 - -0.8 36,965 + GFF3530 0.56 +0.9 36,965 + GFF3530 0.56 -0.5 36,965 + GFF3530 0.56 +2.2 36,966 - GFF3530 0.56 +2.4 36,966 - GFF3530 0.56 -2.0 36,983 + GFF3530 0.58 -0.2 36,983 + GFF3530 0.58 +0.0 36,984 - GFF3530 0.58 +1.6 37,453 + GFF3531 0.14 -1.5 37,453 + GFF3531 0.14 -1.8 37,453 + GFF3531 0.14 +0.7 37,453 + GFF3531 0.14 -2.1 37,454 - GFF3531 0.14 -0.6 37,931 - GFF3531 0.57 +0.6 37,931 - GFF3531 0.57 -0.5
Or see this region's nucleotide sequence