Experiment: Community=arabino-guar; Passage=4
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt GFF3524 and GFF3525 are separated by 86 nucleotides GFF3525 and GFF3526 overlap by 4 nucleotides GFF3526 and GFF3527 overlap by 4 nucleotides
GFF3524 - Possible NADH oxidoreductase, at 30,358 to 31,494
GFF3524
GFF3525 - Protein tyrosine/serine phosphatase, at 31,581 to 32,117
GFF3525
GFF3526 - hypothetical protein, at 32,114 to 32,608
GFF3526
GFF3527 - UDP-N-acetylglucosamine:LPS N-acetylglucosamine transferase, at 32,605 to 33,750
GFF3527
Position (kb) 31
32
33 Strain fitness (log2 ratio) -4
-3
-2
-1
0
1
2
3
4 at 30.648 kb on - strand, within GFF3524 at 30.648 kb on - strand, within GFF3524 at 30.648 kb on - strand, within GFF3524 at 30.648 kb on - strand, within GFF3524 at 30.648 kb on - strand, within GFF3524 at 30.653 kb on + strand, within GFF3524 at 30.653 kb on + strand, within GFF3524 at 30.654 kb on - strand, within GFF3524 at 30.654 kb on - strand, within GFF3524 at 30.654 kb on - strand, within GFF3524 at 30.654 kb on - strand, within GFF3524 at 30.654 kb on - strand, within GFF3524 at 30.681 kb on - strand, within GFF3524 at 30.689 kb on + strand, within GFF3524 at 30.689 kb on + strand, within GFF3524 at 30.689 kb on + strand, within GFF3524 at 30.690 kb on - strand, within GFF3524 at 30.690 kb on - strand, within GFF3524 at 30.690 kb on - strand, within GFF3524 at 30.690 kb on - strand, within GFF3524 at 30.690 kb on - strand, within GFF3524 at 30.848 kb on + strand, within GFF3524 at 30.848 kb on + strand, within GFF3524 at 30.848 kb on + strand, within GFF3524 at 30.848 kb on + strand, within GFF3524 at 30.848 kb on + strand, within GFF3524 at 30.848 kb on + strand, within GFF3524 at 30.848 kb on + strand, within GFF3524 at 30.848 kb on + strand, within GFF3524 at 30.848 kb on + strand, within GFF3524 at 30.848 kb on + strand, within GFF3524 at 30.848 kb on + strand, within GFF3524 at 30.849 kb on - strand, within GFF3524 at 30.849 kb on - strand, within GFF3524 at 30.849 kb on - strand, within GFF3524 at 30.849 kb on - strand, within GFF3524 at 30.849 kb on - strand, within GFF3524 at 30.849 kb on - strand, within GFF3524 at 30.849 kb on - strand, within GFF3524 at 30.900 kb on + strand, within GFF3524 at 31.115 kb on + strand, within GFF3524 at 31.125 kb on - strand, within GFF3524 at 31.125 kb on - strand, within GFF3524 at 31.549 kb on - strand at 31.549 kb on - strand at 31.550 kb on + strand at 31.550 kb on + strand at 31.550 kb on + strand at 31.550 kb on + strand at 31.550 kb on + strand at 31.550 kb on + strand at 31.550 kb on + strand at 31.550 kb on + strand at 31.550 kb on + strand at 31.550 kb on + strand at 31.550 kb on + strand at 31.551 kb on - strand at 31.551 kb on - strand at 31.551 kb on - strand at 31.551 kb on - strand at 31.551 kb on - strand at 31.551 kb on - strand at 31.654 kb on + strand, within GFF3525 at 31.684 kb on + strand, within GFF3525 at 31.684 kb on + strand, within GFF3525 at 31.753 kb on + strand, within GFF3525 at 31.754 kb on - strand, within GFF3525 at 31.754 kb on - strand, within GFF3525 at 32.409 kb on + strand, within GFF3526 at 32.410 kb on - strand, within GFF3526 at 32.416 kb on - strand, within GFF3526 at 32.563 kb on - strand at 32.733 kb on - strand, within GFF3527 at 32.733 kb on - strand, within GFF3527 at 32.733 kb on - strand, within GFF3527 at 32.733 kb on - strand, within GFF3527 at 32.990 kb on + strand, within GFF3527 at 32.991 kb on - strand, within GFF3527 at 32.991 kb on - strand, within GFF3527 at 32.991 kb on - strand, within GFF3527
Per-strain Table
Position Strand Gene LocusTag Fraction Community=arabino-guar; Passage=4 remove 30,648 - GFF3524 0.26 +2.8 30,648 - GFF3524 0.26 -0.5 30,648 - GFF3524 0.26 +0.6 30,648 - GFF3524 0.26 +2.2 30,648 - GFF3524 0.26 +2.8 30,653 + GFF3524 0.26 -2.4 30,653 + GFF3524 0.26 -1.7 30,654 - GFF3524 0.26 +0.3 30,654 - GFF3524 0.26 -0.4 30,654 - GFF3524 0.26 -4.4 30,654 - GFF3524 0.26 -2.0 30,654 - GFF3524 0.26 +0.3 30,681 - GFF3524 0.28 -0.6 30,689 + GFF3524 0.29 -0.1 30,689 + GFF3524 0.29 +1.6 30,689 + GFF3524 0.29 -0.8 30,690 - GFF3524 0.29 +0.4 30,690 - GFF3524 0.29 -0.9 30,690 - GFF3524 0.29 -1.0 30,690 - GFF3524 0.29 +0.2 30,690 - GFF3524 0.29 +0.7 30,848 + GFF3524 0.43 -1.5 30,848 + GFF3524 0.43 +0.2 30,848 + GFF3524 0.43 -0.3 30,848 + GFF3524 0.43 -4.3 30,848 + GFF3524 0.43 -0.6 30,848 + GFF3524 0.43 +1.0 30,848 + GFF3524 0.43 +0.5 30,848 + GFF3524 0.43 -3.9 30,848 + GFF3524 0.43 -2.3 30,848 + GFF3524 0.43 +0.1 30,848 + GFF3524 0.43 +2.2 30,849 - GFF3524 0.43 -1.2 30,849 - GFF3524 0.43 +0.6 30,849 - GFF3524 0.43 +0.3 30,849 - GFF3524 0.43 -0.0 30,849 - GFF3524 0.43 +3.2 30,849 - GFF3524 0.43 -3.5 30,849 - GFF3524 0.43 -4.3 30,900 + GFF3524 0.48 +0.9 31,115 + GFF3524 0.67 +0.5 31,125 - GFF3524 0.67 +0.6 31,125 - GFF3524 0.67 -1.4 31,549 - -3.5 31,549 - -1.8 31,550 + -0.4 31,550 + -2.8 31,550 + -1.1 31,550 + -0.2 31,550 + -0.1 31,550 + +0.5 31,550 + -0.2 31,550 + -1.2 31,550 + +4.0 31,550 + -1.8 31,550 + +0.0 31,551 - -2.4 31,551 - -0.6 31,551 - -1.4 31,551 - -0.1 31,551 - -0.8 31,551 - -1.6 31,654 + GFF3525 0.14 -1.8 31,684 + GFF3525 0.19 -3.2 31,684 + GFF3525 0.19 -1.8 31,753 + GFF3525 0.32 +1.2 31,754 - GFF3525 0.32 -2.2 31,754 - GFF3525 0.32 -2.1 32,409 + GFF3526 0.60 -0.2 32,410 - GFF3526 0.60 +1.7 32,416 - GFF3526 0.61 +0.0 32,563 - +1.3 32,733 - GFF3527 0.11 -1.9 32,733 - GFF3527 0.11 +0.5 32,733 - GFF3527 0.11 +3.0 32,733 - GFF3527 0.11 -0.0 32,990 + GFF3527 0.34 -3.4 32,991 - GFF3527 0.34 -1.0 32,991 - GFF3527 0.34 +0.2 32,991 - GFF3527 0.34 -0.1
Or see this region's nucleotide sequence