Experiment: Community=arabino-guar; Passage=4
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt GFF3509 and GFF3510 overlap by 4 nucleotides GFF3510 and GFF3511 are separated by 351 nucleotides
GFF3509 - Multidrug efflux system, inner membrane proton/drug antiporter (RND type) => MexI of MexHI-OpmD system, at 12,636 to 15,716
GFF3509
GFF3510 - Multidrug efflux system, membrane fusion component => MexH of MexHI-OpmD system, at 15,713 to 16,822
GFF3510
GFF3511 - no description, at 17,174 to 18,160
GFF3511
Position (kb)
15
16
17 Strain fitness (log2 ratio)
-5
-4
-3
-2
-1
0
1
2
3 at 14.875 kb on + strand, within GFF3509 at 14.876 kb on - strand, within GFF3509 at 14.876 kb on - strand, within GFF3509 at 14.934 kb on + strand, within GFF3509 at 14.934 kb on + strand, within GFF3509 at 14.935 kb on - strand, within GFF3509 at 15.049 kb on + strand, within GFF3509 at 15.049 kb on + strand, within GFF3509 at 15.050 kb on - strand, within GFF3509 at 15.050 kb on - strand, within GFF3509 at 15.050 kb on - strand, within GFF3509 at 15.050 kb on - strand, within GFF3509 at 15.298 kb on + strand, within GFF3509 at 15.298 kb on + strand, within GFF3509 at 15.298 kb on + strand, within GFF3509 at 15.298 kb on + strand, within GFF3509 at 15.298 kb on + strand, within GFF3509 at 15.299 kb on - strand, within GFF3509 at 15.299 kb on - strand, within GFF3509 at 15.368 kb on - strand, within GFF3509 at 15.368 kb on - strand, within GFF3509 at 15.481 kb on + strand at 15.481 kb on + strand at 15.565 kb on + strand at 15.566 kb on - strand at 15.780 kb on + strand at 15.780 kb on + strand at 15.951 kb on + strand, within GFF3510 at 15.951 kb on + strand, within GFF3510 at 15.951 kb on + strand, within GFF3510 at 15.952 kb on - strand, within GFF3510 at 16.773 kb on - strand at 16.836 kb on - strand at 16.860 kb on + strand at 16.861 kb on - strand at 16.911 kb on - strand at 16.911 kb on - strand at 17.114 kb on + strand at 17.115 kb on - strand at 17.139 kb on + strand at 17.139 kb on + strand at 17.139 kb on + strand at 17.139 kb on + strand at 17.139 kb on + strand at 17.139 kb on + strand at 17.140 kb on - strand at 17.140 kb on - strand at 17.140 kb on - strand at 17.140 kb on - strand at 17.140 kb on - strand at 17.140 kb on - strand at 17.231 kb on + strand at 17.231 kb on + strand at 17.527 kb on + strand, within GFF3511 at 17.766 kb on + strand, within GFF3511 at 17.773 kb on + strand, within GFF3511 at 17.775 kb on - strand, within GFF3511
Per-strain Table
Position Strand Gene LocusTag Fraction Community=arabino-guar; Passage=4 remove 14,875 + GFF3509 0.73 -0.0 14,876 - GFF3509 0.73 +1.6 14,876 - GFF3509 0.73 -2.2 14,934 + GFF3509 0.75 -2.8 14,934 + GFF3509 0.75 -0.1 14,935 - GFF3509 0.75 -0.0 15,049 + GFF3509 0.78 +1.4 15,049 + GFF3509 0.78 -0.2 15,050 - GFF3509 0.78 +0.7 15,050 - GFF3509 0.78 -1.7 15,050 - GFF3509 0.78 +0.3 15,050 - GFF3509 0.78 +1.1 15,298 + GFF3509 0.86 -0.4 15,298 + GFF3509 0.86 -0.4 15,298 + GFF3509 0.86 +1.7 15,298 + GFF3509 0.86 +0.6 15,298 + GFF3509 0.86 -1.8 15,299 - GFF3509 0.86 +2.0 15,299 - GFF3509 0.86 +1.8 15,368 - GFF3509 0.89 +0.5 15,368 - GFF3509 0.89 +0.4 15,481 + +0.6 15,481 + -0.3 15,565 + +3.1 15,566 - -5.0 15,780 + +0.2 15,780 + -3.8 15,951 + GFF3510 0.21 -1.5 15,951 + GFF3510 0.21 -2.0 15,951 + GFF3510 0.21 -0.4 15,952 - GFF3510 0.22 -2.3 16,773 - -0.6 16,836 - -2.0 16,860 + +1.6 16,861 - +1.3 16,911 - -3.3 16,911 - -0.5 17,114 + -0.2 17,115 - -1.6 17,139 + -0.2 17,139 + -0.4 17,139 + -1.0 17,139 + +0.8 17,139 + -3.8 17,139 + +0.9 17,140 - +0.3 17,140 - -1.6 17,140 - -3.8 17,140 - +0.3 17,140 - +1.3 17,140 - +1.0 17,231 + +2.5 17,231 + +0.2 17,527 + GFF3511 0.36 +0.6 17,766 + GFF3511 0.60 +0.2 17,773 + GFF3511 0.61 +0.2 17,775 - GFF3511 0.61 +0.8
Or see this region's nucleotide sequence