Strain Fitness in Variovorax sp. SCN45 around GFF3485

Experiment: Community=arabino-guar; Passage=4

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntGFF3484 and GFF3485 are separated by 95 nucleotidesGFF3485 and GFF3486 are separated by 19 nucleotides GFF3484 - ABC transporter, substrate-binding protein (cluster 4, leucine/isoleucine/valine/benzoate), at 306,477 to 307,670 GFF3484 GFF3485 - Ferredoxin, 2Fe-2S, at 307,766 to 308,089 GFF3485 GFF3486 - glutamine synthetase family protein, at 308,109 to 309,557 GFF3486 Position (kb) 307 308 309Strain fitness (log2 ratio) -3 -2 -1 0 1 2 3at 306.829 kb on + strand, within GFF3484at 306.829 kb on + strand, within GFF3484at 306.829 kb on + strand, within GFF3484at 306.829 kb on + strand, within GFF3484at 306.829 kb on + strand, within GFF3484at 306.830 kb on - strand, within GFF3484at 306.830 kb on - strand, within GFF3484at 306.830 kb on - strand, within GFF3484at 306.880 kb on + strand, within GFF3484at 306.880 kb on + strand, within GFF3484at 306.880 kb on + strand, within GFF3484at 306.881 kb on - strand, within GFF3484at 306.881 kb on - strand, within GFF3484at 306.881 kb on - strand, within GFF3484at 306.881 kb on - strand, within GFF3484at 306.881 kb on - strand, within GFF3484at 306.881 kb on - strand, within GFF3484at 307.036 kb on + strand, within GFF3484at 307.037 kb on - strand, within GFF3484at 307.037 kb on - strand, within GFF3484at 307.037 kb on - strand, within GFF3484at 307.037 kb on - strand, within GFF3484at 307.165 kb on + strand, within GFF3484at 307.165 kb on + strand, within GFF3484at 307.165 kb on + strand, within GFF3484at 307.165 kb on + strand, within GFF3484at 307.166 kb on - strand, within GFF3484at 307.195 kb on + strand, within GFF3484at 307.195 kb on + strand, within GFF3484at 307.195 kb on + strand, within GFF3484at 307.195 kb on + strand, within GFF3484at 307.195 kb on + strand, within GFF3484at 307.196 kb on - strand, within GFF3484at 307.196 kb on - strand, within GFF3484at 307.196 kb on - strand, within GFF3484at 307.196 kb on - strand, within GFF3484at 307.196 kb on - strand, within GFF3484at 307.196 kb on - strand, within GFF3484at 307.196 kb on - strand, within GFF3484at 307.249 kb on + strand, within GFF3484at 307.249 kb on + strand, within GFF3484at 307.336 kb on + strand, within GFF3484at 307.337 kb on - strand, within GFF3484at 307.498 kb on + strand, within GFF3484at 307.498 kb on - strand, within GFF3484at 307.532 kb on - strand, within GFF3484at 307.552 kb on + strandat 307.552 kb on + strandat 307.552 kb on + strandat 307.552 kb on + strandat 307.552 kb on + strandat 307.552 kb on + strandat 307.552 kb on + strandat 307.553 kb on - strandat 307.935 kb on + strand, within GFF3485at 307.936 kb on - strand, within GFF3485at 307.936 kb on - strand, within GFF3485at 307.936 kb on - strand, within GFF3485at 308.073 kb on + strandat 308.073 kb on + strandat 308.073 kb on + strandat 308.073 kb on + strandat 308.073 kb on + strandat 308.073 kb on + strandat 308.073 kb on + strandat 308.073 kb on + strandat 308.073 kb on + strandat 308.073 kb on + strandat 308.073 kb on + strandat 308.073 kb on + strandat 308.073 kb on + strandat 308.074 kb on - strandat 308.074 kb on - strandat 308.074 kb on - strandat 308.074 kb on - strandat 308.074 kb on - strandat 308.074 kb on - strandat 308.074 kb on - strandat 308.074 kb on - strandat 308.074 kb on - strandat 308.074 kb on - strandat 308.074 kb on - strandat 308.074 kb on - strandat 308.074 kb on - strandat 308.074 kb on - strandat 308.074 kb on - strandat 308.075 kb on - strandat 308.197 kb on + strandat 308.197 kb on + strandat 308.197 kb on + strandat 308.198 kb on - strandat 308.380 kb on + strand, within GFF3486at 308.380 kb on + strand, within GFF3486at 308.380 kb on + strand, within GFF3486at 308.381 kb on - strand, within GFF3486at 308.381 kb on - strand, within GFF3486at 308.381 kb on - strand, within GFF3486at 308.381 kb on - strand, within GFF3486at 308.381 kb on - strand, within GFF3486at 308.381 kb on - strand, within GFF3486at 308.387 kb on - strand, within GFF3486at 308.387 kb on - strand, within GFF3486at 308.533 kb on + strand, within GFF3486at 308.533 kb on + strand, within GFF3486at 308.534 kb on - strand, within GFF3486at 308.534 kb on - strand, within GFF3486at 308.534 kb on - strand, within GFF3486at 308.534 kb on - strand, within GFF3486at 308.599 kb on + strand, within GFF3486at 308.599 kb on + strand, within GFF3486at 308.599 kb on + strand, within GFF3486at 308.599 kb on + strand, within GFF3486at 308.599 kb on + strand, within GFF3486at 308.599 kb on + strand, within GFF3486at 308.599 kb on + strand, within GFF3486at 308.599 kb on + strand, within GFF3486at 308.599 kb on + strand, within GFF3486at 308.599 kb on + strand, within GFF3486at 308.599 kb on + strand, within GFF3486at 308.600 kb on - strand, within GFF3486at 308.600 kb on - strand, within GFF3486at 308.944 kb on + strand, within GFF3486at 308.945 kb on - strand, within GFF3486at 308.945 kb on - strand, within GFF3486at 308.962 kb on + strand, within GFF3486at 308.962 kb on + strand, within GFF3486at 308.962 kb on + strand, within GFF3486at 308.962 kb on + strand, within GFF3486at 308.963 kb on - strand, within GFF3486at 308.963 kb on - strand, within GFF3486at 308.963 kb on - strand, within GFF3486

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Per-strain Table

Position Strand Gene LocusTag Fraction Community=arabino-guar; Passage=4
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306,829 + GFF3484 0.29 -3.5
306,829 + GFF3484 0.29 -1.6
306,829 + GFF3484 0.29 -2.5
306,829 + GFF3484 0.29 +0.6
306,829 + GFF3484 0.29 -0.7
306,830 - GFF3484 0.30 -0.1
306,830 - GFF3484 0.30 -0.8
306,830 - GFF3484 0.30 +0.6
306,880 + GFF3484 0.34 -1.3
306,880 + GFF3484 0.34 -0.1
306,880 + GFF3484 0.34 +1.7
306,881 - GFF3484 0.34 +0.9
306,881 - GFF3484 0.34 -1.1
306,881 - GFF3484 0.34 -0.0
306,881 - GFF3484 0.34 -0.1
306,881 - GFF3484 0.34 +1.1
306,881 - GFF3484 0.34 +0.5
307,036 + GFF3484 0.47 -2.4
307,037 - GFF3484 0.47 -0.3
307,037 - GFF3484 0.47 -0.1
307,037 - GFF3484 0.47 +0.7
307,037 - GFF3484 0.47 -0.1
307,165 + GFF3484 0.58 +0.4
307,165 + GFF3484 0.58 +0.1
307,165 + GFF3484 0.58 +1.3
307,165 + GFF3484 0.58 +0.5
307,166 - GFF3484 0.58 -2.0
307,195 + GFF3484 0.60 -1.6
307,195 + GFF3484 0.60 +0.2
307,195 + GFF3484 0.60 -1.9
307,195 + GFF3484 0.60 +0.9
307,195 + GFF3484 0.60 -3.5
307,196 - GFF3484 0.60 -0.3
307,196 - GFF3484 0.60 +0.3
307,196 - GFF3484 0.60 -2.1
307,196 - GFF3484 0.60 +1.7
307,196 - GFF3484 0.60 +0.9
307,196 - GFF3484 0.60 +0.7
307,196 - GFF3484 0.60 -1.2
307,249 + GFF3484 0.65 +0.9
307,249 + GFF3484 0.65 -0.5
307,336 + GFF3484 0.72 -1.1
307,337 - GFF3484 0.72 +0.7
307,498 + GFF3484 0.86 -1.6
307,498 - GFF3484 0.86 -0.3
307,532 - GFF3484 0.88 +2.3
307,552 + -3.0
307,552 + +2.3
307,552 + -1.7
307,552 + -1.1
307,552 + +2.3
307,552 + +2.3
307,552 + +0.5
307,553 - +0.9
307,935 + GFF3485 0.52 -1.3
307,936 - GFF3485 0.52 +1.6
307,936 - GFF3485 0.52 +3.0
307,936 - GFF3485 0.52 +1.3
308,073 + +2.4
308,073 + +0.5
308,073 + +0.0
308,073 + +0.9
308,073 + -1.5
308,073 + +1.5
308,073 + -0.9
308,073 + +2.8
308,073 + +0.4
308,073 + -1.9
308,073 + -0.3
308,073 + -0.6
308,073 + +0.1
308,074 - +1.4
308,074 - -0.9
308,074 - -0.3
308,074 - +0.8
308,074 - -0.3
308,074 - +1.1
308,074 - -0.7
308,074 - -3.0
308,074 - -0.3
308,074 - -1.7
308,074 - -0.6
308,074 - +2.4
308,074 - +0.5
308,074 - -2.7
308,074 - -3.4
308,075 - -2.9
308,197 + -1.8
308,197 + -0.1
308,197 + +0.3
308,198 - -1.8
308,380 + GFF3486 0.19 -0.1
308,380 + GFF3486 0.19 -2.3
308,380 + GFF3486 0.19 -0.5
308,381 - GFF3486 0.19 +2.9
308,381 - GFF3486 0.19 +2.0
308,381 - GFF3486 0.19 -2.1
308,381 - GFF3486 0.19 +0.7
308,381 - GFF3486 0.19 -2.1
308,381 - GFF3486 0.19 -0.3
308,387 - GFF3486 0.19 +0.6
308,387 - GFF3486 0.19 -0.3
308,533 + GFF3486 0.29 -1.4
308,533 + GFF3486 0.29 -1.3
308,534 - GFF3486 0.29 -1.5
308,534 - GFF3486 0.29 -0.4
308,534 - GFF3486 0.29 -1.9
308,534 - GFF3486 0.29 +0.9
308,599 + GFF3486 0.34 -0.5
308,599 + GFF3486 0.34 +0.7
308,599 + GFF3486 0.34 -2.3
308,599 + GFF3486 0.34 +0.4
308,599 + GFF3486 0.34 +1.3
308,599 + GFF3486 0.34 +0.3
308,599 + GFF3486 0.34 -0.9
308,599 + GFF3486 0.34 -2.4
308,599 + GFF3486 0.34 -2.4
308,599 + GFF3486 0.34 -2.9
308,599 + GFF3486 0.34 -1.4
308,600 - GFF3486 0.34 -0.3
308,600 - GFF3486 0.34 +0.3
308,944 + GFF3486 0.58 -2.1
308,945 - GFF3486 0.58 +0.7
308,945 - GFF3486 0.58 -1.2
308,962 + GFF3486 0.59 +0.7
308,962 + GFF3486 0.59 +0.1
308,962 + GFF3486 0.59 -2.9
308,962 + GFF3486 0.59 -0.5
308,963 - GFF3486 0.59 -2.9
308,963 - GFF3486 0.59 +0.3
308,963 - GFF3486 0.59 +2.1

Or see this region's nucleotide sequence