Experiment: Community=arabino-guar; Passage=4
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt GFF3462 and GFF3463 are separated by 4 nucleotides GFF3463 and GFF3464 are separated by 5 nucleotides GFF3464 and GFF3465 are separated by 63 nucleotides GFF3465 and GFF3466 are separated by 33 nucleotides GFF3466 and GFF3467 overlap by 4 nucleotides
GFF3462 - Urea ABC transporter, permease protein UrtC, at 283,791 to 284,846
GFF3462
GFF3463 - Urea ABC transporter, permease protein UrtB, at 284,851 to 285,753
GFF3463
GFF3464 - Urea ABC transporter, substrate-binding protein UrtA, at 285,759 to 286,952
GFF3464
GFF3465 - hypothetical protein, at 287,016 to 287,297
GFF3465
GFF3466 - FIG00932805: hypothetical protein, at 287,331 to 287,825
GFF3466
GFF3467 - Transcriptional regulator, LysR family, at 287,822 to 288,769
GFF3467
Position (kb) 285
286
287 Strain fitness (log2 ratio) -4
-3
-2
-1
0
1
2
3 at 284.894 kb on + strand at 284.894 kb on + strand at 284.895 kb on - strand at 284.895 kb on - strand at 284.895 kb on - strand at 284.954 kb on + strand, within GFF3463 at 284.954 kb on + strand, within GFF3463 at 284.955 kb on - strand, within GFF3463 at 285.059 kb on + strand, within GFF3463 at 285.060 kb on - strand, within GFF3463 at 285.060 kb on - strand, within GFF3463 at 285.060 kb on - strand, within GFF3463 at 285.060 kb on - strand, within GFF3463 at 285.060 kb on - strand, within GFF3463 at 285.060 kb on - strand, within GFF3463 at 285.254 kb on + strand, within GFF3463 at 285.398 kb on + strand, within GFF3463 at 285.461 kb on + strand, within GFF3463 at 285.495 kb on - strand, within GFF3463 at 285.545 kb on + strand, within GFF3463 at 285.546 kb on - strand, within GFF3463 at 285.546 kb on - strand, within GFF3463 at 285.596 kb on + strand, within GFF3463 at 285.596 kb on + strand, within GFF3463 at 285.597 kb on - strand, within GFF3463 at 285.605 kb on + strand, within GFF3463 at 285.606 kb on - strand, within GFF3463 at 285.883 kb on - strand, within GFF3464 at 285.883 kb on - strand, within GFF3464 at 285.989 kb on - strand, within GFF3464 at 286.000 kb on + strand, within GFF3464 at 286.001 kb on - strand, within GFF3464 at 286.001 kb on - strand, within GFF3464 at 286.001 kb on - strand, within GFF3464 at 286.042 kb on + strand, within GFF3464 at 286.042 kb on + strand, within GFF3464 at 286.043 kb on - strand, within GFF3464 at 286.047 kb on - strand, within GFF3464 at 286.047 kb on - strand, within GFF3464 at 286.118 kb on - strand, within GFF3464 at 286.120 kb on + strand, within GFF3464 at 286.120 kb on + strand, within GFF3464 at 286.228 kb on + strand, within GFF3464 at 286.229 kb on - strand, within GFF3464 at 286.229 kb on - strand, within GFF3464 at 286.264 kb on + strand, within GFF3464 at 286.264 kb on + strand, within GFF3464 at 286.264 kb on + strand, within GFF3464 at 286.264 kb on + strand, within GFF3464 at 286.265 kb on - strand, within GFF3464 at 286.265 kb on - strand, within GFF3464 at 286.408 kb on + strand, within GFF3464 at 286.408 kb on + strand, within GFF3464 at 286.414 kb on + strand, within GFF3464 at 286.414 kb on + strand, within GFF3464 at 286.415 kb on - strand, within GFF3464 at 286.540 kb on + strand, within GFF3464 at 286.540 kb on + strand, within GFF3464 at 286.540 kb on + strand, within GFF3464 at 286.541 kb on - strand, within GFF3464 at 286.543 kb on + strand, within GFF3464 at 287.180 kb on + strand, within GFF3465 at 287.181 kb on - strand, within GFF3465 at 287.222 kb on + strand, within GFF3465 at 287.222 kb on + strand, within GFF3465 at 287.222 kb on + strand, within GFF3465 at 287.223 kb on - strand, within GFF3465 at 287.223 kb on - strand, within GFF3465 at 287.223 kb on - strand, within GFF3465 at 287.223 kb on - strand, within GFF3465 at 287.223 kb on - strand, within GFF3465 at 287.232 kb on - strand, within GFF3465 at 287.282 kb on + strand at 287.282 kb on + strand at 287.282 kb on + strand at 287.282 kb on + strand at 287.282 kb on + strand at 287.282 kb on + strand at 287.283 kb on - strand at 287.283 kb on - strand at 287.283 kb on - strand at 287.283 kb on - strand at 287.283 kb on - strand at 287.322 kb on + strand at 287.322 kb on + strand at 287.443 kb on + strand, within GFF3466 at 287.443 kb on + strand, within GFF3466 at 287.443 kb on + strand, within GFF3466 at 287.443 kb on + strand, within GFF3466 at 287.443 kb on + strand, within GFF3466 at 287.827 kb on - strand at 287.839 kb on + strand at 287.839 kb on + strand at 287.892 kb on + strand at 287.893 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction Community=arabino-guar; Passage=4 remove 284,894 + -2.1 284,894 + +0.7 284,895 - -2.6 284,895 - -1.2 284,895 - -0.3 284,954 + GFF3463 0.11 -1.3 284,954 + GFF3463 0.11 -0.8 284,955 - GFF3463 0.12 +0.2 285,059 + GFF3463 0.23 -2.8 285,060 - GFF3463 0.23 +1.8 285,060 - GFF3463 0.23 -2.4 285,060 - GFF3463 0.23 -0.1 285,060 - GFF3463 0.23 +1.7 285,060 - GFF3463 0.23 -1.5 285,060 - GFF3463 0.23 -0.3 285,254 + GFF3463 0.45 -1.5 285,398 + GFF3463 0.61 +0.2 285,461 + GFF3463 0.68 -0.7 285,495 - GFF3463 0.71 +1.3 285,545 + GFF3463 0.77 -1.4 285,546 - GFF3463 0.77 -0.7 285,546 - GFF3463 0.77 -1.9 285,596 + GFF3463 0.83 +0.5 285,596 + GFF3463 0.83 -2.0 285,597 - GFF3463 0.83 +2.3 285,605 + GFF3463 0.83 +0.6 285,606 - GFF3463 0.84 +0.7 285,883 - GFF3464 0.10 -0.3 285,883 - GFF3464 0.10 -1.3 285,989 - GFF3464 0.19 +0.1 286,000 + GFF3464 0.20 -4.1 286,001 - GFF3464 0.20 -0.3 286,001 - GFF3464 0.20 -2.4 286,001 - GFF3464 0.20 -0.8 286,042 + GFF3464 0.24 -0.3 286,042 + GFF3464 0.24 +1.4 286,043 - GFF3464 0.24 -2.9 286,047 - GFF3464 0.24 -0.1 286,047 - GFF3464 0.24 -0.7 286,118 - GFF3464 0.30 -0.7 286,120 + GFF3464 0.30 -1.1 286,120 + GFF3464 0.30 -0.5 286,228 + GFF3464 0.39 +0.1 286,229 - GFF3464 0.39 -3.5 286,229 - GFF3464 0.39 +0.3 286,264 + GFF3464 0.42 +0.5 286,264 + GFF3464 0.42 +1.8 286,264 + GFF3464 0.42 -2.1 286,264 + GFF3464 0.42 -1.6 286,265 - GFF3464 0.42 +0.2 286,265 - GFF3464 0.42 -1.0 286,408 + GFF3464 0.54 +1.0 286,408 + GFF3464 0.54 -1.8 286,414 + GFF3464 0.55 -1.6 286,414 + GFF3464 0.55 -1.6 286,415 - GFF3464 0.55 -2.6 286,540 + GFF3464 0.65 -0.3 286,540 + GFF3464 0.65 -1.3 286,540 + GFF3464 0.65 +0.1 286,541 - GFF3464 0.65 -4.0 286,543 + GFF3464 0.66 +1.5 287,180 + GFF3465 0.58 -0.7 287,181 - GFF3465 0.59 -0.5 287,222 + GFF3465 0.73 -0.7 287,222 + GFF3465 0.73 +1.3 287,222 + GFF3465 0.73 +1.1 287,223 - GFF3465 0.73 -3.5 287,223 - GFF3465 0.73 -1.3 287,223 - GFF3465 0.73 -0.3 287,223 - GFF3465 0.73 -2.3 287,223 - GFF3465 0.73 +0.8 287,232 - GFF3465 0.77 -1.4 287,282 + +0.4 287,282 + +0.6 287,282 + +1.2 287,282 + -0.7 287,282 + +0.0 287,282 + +0.3 287,283 - +2.3 287,283 - -0.7 287,283 - -0.9 287,283 - +3.0 287,283 - -0.9 287,322 + +0.9 287,322 + +0.4 287,443 + GFF3466 0.23 -0.4 287,443 + GFF3466 0.23 -0.2 287,443 + GFF3466 0.23 -1.8 287,443 + GFF3466 0.23 -3.2 287,443 + GFF3466 0.23 -1.9 287,827 - -1.3 287,839 + -2.5 287,839 + -0.5 287,892 + -3.2 287,893 - +0.6
Or see this region's nucleotide sequence