Experiment: Community=arabino-guar; Passage=4
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt GFF3440 and GFF3441 are separated by 5 nucleotides GFF3441 and GFF3442 are separated by 86 nucleotides GFF3442 and GFF3443 are separated by 6 nucleotides
GFF3440 - FIG00460300: hypothetical protein, at 263,673 to 264,503
GFF3440
GFF3441 - Hypothetical protein VC0266 (sugar utilization related?), at 264,509 to 265,087
GFF3441
GFF3442 - RidA/YER057c/UK114 superfamily protein, at 265,174 to 265,578
GFF3442
GFF3443 - hypothetical protein, at 265,585 to 267,348
GFF3443
Position (kb) 265
266 Strain fitness (log2 ratio) -4
-3
-2
-1
0
1
2
3 at 264.192 kb on + strand, within GFF3440 at 264.192 kb on + strand, within GFF3440 at 264.193 kb on - strand, within GFF3440 at 264.219 kb on + strand, within GFF3440 at 264.219 kb on + strand, within GFF3440 at 264.220 kb on - strand, within GFF3440 at 264.722 kb on + strand, within GFF3441 at 264.723 kb on - strand, within GFF3441 at 264.723 kb on - strand, within GFF3441 at 264.723 kb on - strand, within GFF3441 at 264.723 kb on - strand, within GFF3441 at 264.723 kb on - strand, within GFF3441 at 264.758 kb on + strand, within GFF3441 at 264.759 kb on - strand, within GFF3441 at 264.759 kb on - strand, within GFF3441 at 264.873 kb on + strand, within GFF3441 at 264.873 kb on + strand, within GFF3441 at 264.874 kb on - strand, within GFF3441 at 264.874 kb on - strand, within GFF3441 at 264.882 kb on - strand, within GFF3441 at 264.954 kb on - strand, within GFF3441 at 265.097 kb on + strand at 265.098 kb on - strand at 265.098 kb on - strand at 265.098 kb on - strand at 265.270 kb on + strand, within GFF3442 at 265.270 kb on + strand, within GFF3442 at 265.270 kb on + strand, within GFF3442 at 265.270 kb on + strand, within GFF3442 at 265.270 kb on + strand, within GFF3442 at 265.270 kb on + strand, within GFF3442 at 265.270 kb on + strand, within GFF3442 at 265.270 kb on + strand, within GFF3442 at 265.270 kb on + strand, within GFF3442 at 265.270 kb on + strand, within GFF3442 at 265.271 kb on - strand, within GFF3442 at 265.271 kb on - strand, within GFF3442 at 265.271 kb on - strand, within GFF3442 at 265.271 kb on - strand, within GFF3442 at 265.271 kb on - strand, within GFF3442 at 265.271 kb on - strand, within GFF3442 at 265.271 kb on - strand, within GFF3442 at 265.271 kb on - strand, within GFF3442 at 265.271 kb on - strand, within GFF3442 at 265.423 kb on + strand, within GFF3442 at 265.423 kb on + strand, within GFF3442 at 265.424 kb on - strand, within GFF3442 at 265.424 kb on - strand, within GFF3442 at 265.424 kb on - strand, within GFF3442 at 265.424 kb on - strand, within GFF3442 at 265.424 kb on - strand, within GFF3442 at 265.465 kb on + strand, within GFF3442 at 265.465 kb on + strand, within GFF3442 at 265.465 kb on + strand, within GFF3442 at 265.465 kb on + strand, within GFF3442 at 265.465 kb on + strand, within GFF3442 at 265.465 kb on + strand, within GFF3442 at 265.465 kb on + strand, within GFF3442 at 265.465 kb on + strand, within GFF3442 at 265.465 kb on + strand, within GFF3442 at 265.465 kb on + strand, within GFF3442 at 265.466 kb on - strand, within GFF3442 at 265.466 kb on - strand, within GFF3442 at 265.466 kb on - strand, within GFF3442 at 265.466 kb on - strand, within GFF3442 at 265.466 kb on - strand, within GFF3442 at 265.637 kb on + strand at 265.637 kb on + strand at 265.638 kb on - strand at 265.638 kb on - strand at 265.638 kb on - strand at 265.638 kb on - strand at 265.638 kb on - strand at 265.806 kb on - strand, within GFF3443 at 265.913 kb on + strand, within GFF3443 at 265.913 kb on + strand, within GFF3443 at 265.914 kb on - strand, within GFF3443 at 265.914 kb on - strand, within GFF3443 at 265.914 kb on - strand, within GFF3443 at 265.914 kb on - strand, within GFF3443 at 265.914 kb on - strand, within GFF3443 at 265.914 kb on - strand, within GFF3443 at 265.914 kb on - strand, within GFF3443 at 266.039 kb on + strand, within GFF3443 at 266.039 kb on + strand, within GFF3443 at 266.039 kb on + strand, within GFF3443 at 266.040 kb on - strand, within GFF3443 at 266.040 kb on - strand, within GFF3443 at 266.040 kb on - strand, within GFF3443 at 266.261 kb on + strand, within GFF3443 at 266.261 kb on + strand, within GFF3443 at 266.261 kb on + strand, within GFF3443 at 266.262 kb on - strand, within GFF3443 at 266.303 kb on + strand, within GFF3443 at 266.303 kb on + strand, within GFF3443 at 266.303 kb on + strand, within GFF3443 at 266.304 kb on - strand, within GFF3443 at 266.304 kb on - strand, within GFF3443 at 266.304 kb on - strand, within GFF3443 at 266.436 kb on - strand, within GFF3443 at 266.436 kb on - strand, within GFF3443
Per-strain Table
Position Strand Gene LocusTag Fraction Community=arabino-guar; Passage=4 remove 264,192 + GFF3440 0.62 -0.8 264,192 + GFF3440 0.62 -2.4 264,193 - GFF3440 0.63 +0.3 264,219 + GFF3440 0.66 +0.5 264,219 + GFF3440 0.66 -2.4 264,220 - GFF3440 0.66 -2.7 264,722 + GFF3441 0.37 -0.8 264,723 - GFF3441 0.37 -0.1 264,723 - GFF3441 0.37 -0.4 264,723 - GFF3441 0.37 -2.0 264,723 - GFF3441 0.37 -1.7 264,723 - GFF3441 0.37 -0.9 264,758 + GFF3441 0.43 +0.8 264,759 - GFF3441 0.43 +1.4 264,759 - GFF3441 0.43 -1.7 264,873 + GFF3441 0.63 +3.0 264,873 + GFF3441 0.63 -0.1 264,874 - GFF3441 0.63 +0.5 264,874 - GFF3441 0.63 -0.3 264,882 - GFF3441 0.64 -0.5 264,954 - GFF3441 0.77 -0.1 265,097 + -1.3 265,098 - +1.0 265,098 - +0.5 265,098 - -2.8 265,270 + GFF3442 0.24 +1.3 265,270 + GFF3442 0.24 -2.5 265,270 + GFF3442 0.24 -3.1 265,270 + GFF3442 0.24 +1.5 265,270 + GFF3442 0.24 -1.4 265,270 + GFF3442 0.24 +0.3 265,270 + GFF3442 0.24 +1.9 265,270 + GFF3442 0.24 +0.3 265,270 + GFF3442 0.24 -0.4 265,270 + GFF3442 0.24 -0.2 265,271 - GFF3442 0.24 +0.3 265,271 - GFF3442 0.24 -2.4 265,271 - GFF3442 0.24 -1.7 265,271 - GFF3442 0.24 +2.3 265,271 - GFF3442 0.24 -2.4 265,271 - GFF3442 0.24 -1.6 265,271 - GFF3442 0.24 +1.7 265,271 - GFF3442 0.24 +0.7 265,271 - GFF3442 0.24 -2.1 265,423 + GFF3442 0.61 -0.8 265,423 + GFF3442 0.61 +0.1 265,424 - GFF3442 0.62 -1.2 265,424 - GFF3442 0.62 -0.0 265,424 - GFF3442 0.62 +0.0 265,424 - GFF3442 0.62 -0.5 265,424 - GFF3442 0.62 -1.3 265,465 + GFF3442 0.72 +0.7 265,465 + GFF3442 0.72 -2.1 265,465 + GFF3442 0.72 -2.3 265,465 + GFF3442 0.72 +2.0 265,465 + GFF3442 0.72 +0.7 265,465 + GFF3442 0.72 +0.4 265,465 + GFF3442 0.72 -0.3 265,465 + GFF3442 0.72 -1.2 265,465 + GFF3442 0.72 +1.1 265,465 + GFF3442 0.72 +0.3 265,466 - GFF3442 0.72 -0.5 265,466 - GFF3442 0.72 -1.6 265,466 - GFF3442 0.72 -0.7 265,466 - GFF3442 0.72 -0.1 265,466 - GFF3442 0.72 +0.1 265,637 + +1.5 265,637 + -1.3 265,638 - -2.3 265,638 - +0.9 265,638 - -0.9 265,638 - -2.9 265,638 - +1.5 265,806 - GFF3443 0.13 +1.0 265,913 + GFF3443 0.19 +1.3 265,913 + GFF3443 0.19 +0.7 265,914 - GFF3443 0.19 +1.3 265,914 - GFF3443 0.19 +0.7 265,914 - GFF3443 0.19 -0.9 265,914 - GFF3443 0.19 -1.6 265,914 - GFF3443 0.19 -0.2 265,914 - GFF3443 0.19 -3.8 265,914 - GFF3443 0.19 -4.5 266,039 + GFF3443 0.26 -1.6 266,039 + GFF3443 0.26 -1.9 266,039 + GFF3443 0.26 -2.3 266,040 - GFF3443 0.26 +0.3 266,040 - GFF3443 0.26 -1.2 266,040 - GFF3443 0.26 +0.3 266,261 + GFF3443 0.38 +0.6 266,261 + GFF3443 0.38 -2.5 266,261 + GFF3443 0.38 +2.8 266,262 - GFF3443 0.38 -0.5 266,303 + GFF3443 0.41 +3.1 266,303 + GFF3443 0.41 +1.3 266,303 + GFF3443 0.41 -0.1 266,304 - GFF3443 0.41 +0.7 266,304 - GFF3443 0.41 +1.3 266,304 - GFF3443 0.41 -1.2 266,436 - GFF3443 0.48 -1.5 266,436 - GFF3443 0.48 +0.8
Or see this region's nucleotide sequence