Experiment: Community=arabino-guar; Passage=4
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt GFF3405 and GFF3406 are separated by 132 nucleotides GFF3406 and GFF3407 are separated by 10 nucleotides GFF3407 and GFF3408 are separated by 72 nucleotides
GFF3405 - Benzoyl-CoA oxygenase component B, at 228,516 to 229,943
GFF3405
GFF3406 - Benzoyl-CoA oxygenase component A, at 230,076 to 231,362
GFF3406
GFF3407 - MaoC domain protein, at 231,373 to 231,816
GFF3407
GFF3408 - hypothetical protein, at 231,889 to 232,320
GFF3408
Position (kb)
230
231
232 Strain fitness (log2 ratio)
-5
-4
-3
-2
-1
0
1
2
3 at 229.143 kb on + strand, within GFF3405 at 229.143 kb on + strand, within GFF3405 at 229.143 kb on + strand, within GFF3405 at 229.144 kb on - strand, within GFF3405 at 229.144 kb on - strand, within GFF3405 at 229.144 kb on - strand, within GFF3405 at 229.144 kb on - strand, within GFF3405 at 229.381 kb on - strand, within GFF3405 at 229.395 kb on + strand, within GFF3405 at 229.395 kb on + strand, within GFF3405 at 229.396 kb on - strand, within GFF3405 at 229.396 kb on - strand, within GFF3405 at 229.452 kb on + strand, within GFF3405 at 229.453 kb on - strand, within GFF3405 at 229.524 kb on + strand, within GFF3405 at 229.524 kb on + strand, within GFF3405 at 229.524 kb on + strand, within GFF3405 at 229.524 kb on + strand, within GFF3405 at 229.524 kb on + strand, within GFF3405 at 229.525 kb on - strand, within GFF3405 at 229.525 kb on - strand, within GFF3405 at 229.525 kb on - strand, within GFF3405 at 229.525 kb on - strand, within GFF3405 at 229.525 kb on - strand, within GFF3405 at 229.926 kb on + strand at 229.927 kb on - strand at 229.927 kb on - strand at 229.950 kb on + strand at 229.950 kb on + strand at 229.959 kb on - strand at 230.064 kb on + strand at 230.064 kb on + strand at 230.065 kb on - strand at 230.065 kb on - strand at 230.065 kb on - strand at 230.199 kb on + strand at 230.199 kb on + strand at 230.199 kb on + strand at 230.199 kb on + strand at 230.200 kb on - strand at 230.200 kb on - strand at 230.200 kb on - strand at 230.200 kb on - strand at 230.200 kb on - strand at 230.200 kb on - strand at 230.301 kb on + strand, within GFF3406 at 230.302 kb on - strand, within GFF3406 at 230.302 kb on - strand, within GFF3406 at 230.302 kb on - strand, within GFF3406 at 230.479 kb on - strand, within GFF3406 at 230.517 kb on + strand, within GFF3406 at 230.517 kb on + strand, within GFF3406 at 230.517 kb on + strand, within GFF3406 at 230.517 kb on + strand, within GFF3406 at 230.518 kb on - strand, within GFF3406 at 230.518 kb on - strand, within GFF3406 at 230.518 kb on - strand, within GFF3406 at 230.518 kb on - strand, within GFF3406 at 230.518 kb on - strand, within GFF3406 at 230.518 kb on - strand, within GFF3406 at 230.518 kb on - strand, within GFF3406 at 230.518 kb on - strand, within GFF3406 at 230.721 kb on + strand, within GFF3406 at 230.760 kb on + strand, within GFF3406 at 230.761 kb on - strand, within GFF3406 at 230.761 kb on - strand, within GFF3406 at 230.838 kb on + strand, within GFF3406 at 230.838 kb on + strand, within GFF3406 at 230.838 kb on + strand, within GFF3406 at 230.838 kb on + strand, within GFF3406 at 230.838 kb on + strand, within GFF3406 at 230.838 kb on + strand, within GFF3406 at 230.838 kb on + strand, within GFF3406 at 230.838 kb on + strand, within GFF3406 at 230.839 kb on - strand, within GFF3406 at 230.839 kb on - strand, within GFF3406 at 230.839 kb on - strand, within GFF3406 at 230.839 kb on - strand, within GFF3406 at 230.842 kb on + strand, within GFF3406 at 230.842 kb on + strand, within GFF3406 at 230.842 kb on + strand, within GFF3406 at 230.842 kb on + strand, within GFF3406 at 230.842 kb on + strand, within GFF3406 at 230.842 kb on + strand, within GFF3406 at 230.842 kb on + strand, within GFF3406 at 230.842 kb on + strand, within GFF3406 at 230.842 kb on + strand, within GFF3406 at 230.843 kb on - strand, within GFF3406 at 230.843 kb on - strand, within GFF3406 at 230.843 kb on - strand, within GFF3406 at 230.843 kb on - strand, within GFF3406 at 230.843 kb on - strand, within GFF3406 at 230.843 kb on - strand, within GFF3406 at 230.843 kb on - strand, within GFF3406 at 230.843 kb on - strand, within GFF3406 at 230.843 kb on - strand, within GFF3406 at 230.843 kb on - strand, within GFF3406 at 230.843 kb on - strand, within GFF3406 at 230.843 kb on - strand, within GFF3406 at 230.843 kb on - strand, within GFF3406 at 230.843 kb on - strand, within GFF3406 at 230.843 kb on - strand, within GFF3406 at 230.843 kb on - strand, within GFF3406 at 231.153 kb on + strand, within GFF3406 at 231.225 kb on + strand, within GFF3406 at 231.225 kb on + strand, within GFF3406 at 231.225 kb on + strand, within GFF3406 at 231.226 kb on - strand, within GFF3406 at 231.226 kb on - strand, within GFF3406 at 231.226 kb on - strand, within GFF3406 at 231.226 kb on - strand, within GFF3406 at 231.226 kb on - strand, within GFF3406 at 231.226 kb on - strand, within GFF3406 at 231.357 kb on + strand at 231.357 kb on + strand at 231.358 kb on - strand at 231.358 kb on - strand at 231.358 kb on - strand at 231.358 kb on - strand at 231.358 kb on - strand at 231.360 kb on + strand at 231.360 kb on + strand at 231.360 kb on + strand at 231.360 kb on + strand at 231.360 kb on + strand at 231.360 kb on + strand at 231.361 kb on - strand at 231.361 kb on - strand at 231.361 kb on - strand at 231.361 kb on - strand at 231.361 kb on - strand at 231.361 kb on - strand at 231.361 kb on - strand at 231.361 kb on - strand at 231.421 kb on + strand, within GFF3407 at 231.421 kb on + strand, within GFF3407 at 231.421 kb on + strand, within GFF3407 at 231.421 kb on + strand, within GFF3407 at 231.421 kb on + strand, within GFF3407 at 231.421 kb on + strand, within GFF3407 at 231.421 kb on + strand, within GFF3407 at 231.421 kb on + strand, within GFF3407 at 231.422 kb on - strand, within GFF3407 at 231.422 kb on - strand, within GFF3407 at 231.422 kb on - strand, within GFF3407 at 231.422 kb on - strand, within GFF3407 at 231.422 kb on - strand, within GFF3407 at 231.422 kb on - strand, within GFF3407 at 231.464 kb on - strand, within GFF3407 at 231.543 kb on + strand, within GFF3407 at 231.543 kb on + strand, within GFF3407 at 231.543 kb on + strand, within GFF3407 at 231.543 kb on + strand, within GFF3407 at 231.543 kb on + strand, within GFF3407 at 231.543 kb on + strand, within GFF3407 at 231.543 kb on + strand, within GFF3407 at 231.543 kb on + strand, within GFF3407 at 231.543 kb on + strand, within GFF3407 at 231.543 kb on + strand, within GFF3407 at 231.544 kb on - strand, within GFF3407 at 231.544 kb on - strand, within GFF3407 at 231.544 kb on - strand, within GFF3407 at 231.544 kb on - strand, within GFF3407 at 231.544 kb on - strand, within GFF3407 at 231.544 kb on - strand, within GFF3407 at 231.544 kb on - strand, within GFF3407 at 231.544 kb on - strand, within GFF3407 at 231.891 kb on - strand at 232.339 kb on + strand at 232.339 kb on + strand at 232.339 kb on + strand at 232.340 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction Community=arabino-guar; Passage=4 remove 229,143 + GFF3405 0.44 -3.3 229,143 + GFF3405 0.44 +0.8 229,143 + GFF3405 0.44 +1.1 229,144 - GFF3405 0.44 -1.2 229,144 - GFF3405 0.44 +2.4 229,144 - GFF3405 0.44 -2.1 229,144 - GFF3405 0.44 -4.1 229,381 - GFF3405 0.61 +1.9 229,395 + GFF3405 0.62 -1.1 229,395 + GFF3405 0.62 +2.3 229,396 - GFF3405 0.62 +0.9 229,396 - GFF3405 0.62 -0.2 229,452 + GFF3405 0.66 -1.6 229,453 - GFF3405 0.66 -0.1 229,524 + GFF3405 0.71 -3.8 229,524 + GFF3405 0.71 -0.5 229,524 + GFF3405 0.71 -0.5 229,524 + GFF3405 0.71 +0.2 229,524 + GFF3405 0.71 -3.7 229,525 - GFF3405 0.71 -2.4 229,525 - GFF3405 0.71 +2.1 229,525 - GFF3405 0.71 -1.3 229,525 - GFF3405 0.71 -3.1 229,525 - GFF3405 0.71 -1.5 229,926 + -2.3 229,927 - -1.9 229,927 - -2.7 229,950 + +0.5 229,950 + -0.2 229,959 - -0.6 230,064 + -1.4 230,064 + +2.5 230,065 - +0.7 230,065 - -0.8 230,065 - -0.1 230,199 + -2.3 230,199 + -3.4 230,199 + -3.4 230,199 + -0.9 230,200 - -0.5 230,200 - -1.5 230,200 - -0.3 230,200 - -1.1 230,200 - -0.1 230,200 - -0.3 230,301 + GFF3406 0.17 -1.7 230,302 - GFF3406 0.18 -2.8 230,302 - GFF3406 0.18 -3.8 230,302 - GFF3406 0.18 +1.3 230,479 - GFF3406 0.31 -2.6 230,517 + GFF3406 0.34 -0.7 230,517 + GFF3406 0.34 -2.5 230,517 + GFF3406 0.34 -1.3 230,517 + GFF3406 0.34 +0.7 230,518 - GFF3406 0.34 -1.2 230,518 - GFF3406 0.34 -4.2 230,518 - GFF3406 0.34 +1.3 230,518 - GFF3406 0.34 -0.7 230,518 - GFF3406 0.34 -4.5 230,518 - GFF3406 0.34 -2.3 230,518 - GFF3406 0.34 -0.5 230,518 - GFF3406 0.34 -0.9 230,721 + GFF3406 0.50 +0.7 230,760 + GFF3406 0.53 -2.2 230,761 - GFF3406 0.53 -0.7 230,761 - GFF3406 0.53 -1.2 230,838 + GFF3406 0.59 -2.6 230,838 + GFF3406 0.59 -2.3 230,838 + GFF3406 0.59 -1.4 230,838 + GFF3406 0.59 -1.1 230,838 + GFF3406 0.59 -3.9 230,838 + GFF3406 0.59 -1.2 230,838 + GFF3406 0.59 -1.1 230,838 + GFF3406 0.59 -2.1 230,839 - GFF3406 0.59 -4.3 230,839 - GFF3406 0.59 -1.2 230,839 - GFF3406 0.59 -3.2 230,839 - GFF3406 0.59 -1.4 230,842 + GFF3406 0.60 -3.2 230,842 + GFF3406 0.60 -2.9 230,842 + GFF3406 0.60 -1.4 230,842 + GFF3406 0.60 -3.1 230,842 + GFF3406 0.60 -1.1 230,842 + GFF3406 0.60 -1.1 230,842 + GFF3406 0.60 -2.4 230,842 + GFF3406 0.60 -1.5 230,842 + GFF3406 0.60 -0.1 230,843 - GFF3406 0.60 -1.3 230,843 - GFF3406 0.60 -2.6 230,843 - GFF3406 0.60 -3.2 230,843 - GFF3406 0.60 -0.5 230,843 - GFF3406 0.60 -4.1 230,843 - GFF3406 0.60 -2.0 230,843 - GFF3406 0.60 +0.3 230,843 - GFF3406 0.60 -5.4 230,843 - GFF3406 0.60 -3.7 230,843 - GFF3406 0.60 -1.2 230,843 - GFF3406 0.60 -0.3 230,843 - GFF3406 0.60 -1.6 230,843 - GFF3406 0.60 -2.4 230,843 - GFF3406 0.60 -1.9 230,843 - GFF3406 0.60 -2.4 230,843 - GFF3406 0.60 +0.9 231,153 + GFF3406 0.84 -0.1 231,225 + GFF3406 0.89 -4.0 231,225 + GFF3406 0.89 -3.3 231,225 + GFF3406 0.89 -1.1 231,226 - GFF3406 0.89 -0.3 231,226 - GFF3406 0.89 -2.6 231,226 - GFF3406 0.89 +0.9 231,226 - GFF3406 0.89 -1.7 231,226 - GFF3406 0.89 -4.6 231,226 - GFF3406 0.89 -3.2 231,357 + +0.2 231,357 + -2.3 231,358 - -1.0 231,358 - -1.8 231,358 - -1.4 231,358 - +0.6 231,358 - -1.0 231,360 + -1.3 231,360 + -0.3 231,360 + -2.7 231,360 + -3.8 231,360 + -1.1 231,360 + -0.2 231,361 - +2.9 231,361 - -0.2 231,361 - -1.0 231,361 - -0.9 231,361 - -0.4 231,361 - +0.8 231,361 - -1.3 231,361 - +0.1 231,421 + GFF3407 0.11 -2.8 231,421 + GFF3407 0.11 +1.2 231,421 + GFF3407 0.11 -0.7 231,421 + GFF3407 0.11 -1.6 231,421 + GFF3407 0.11 +0.5 231,421 + GFF3407 0.11 -0.2 231,421 + GFF3407 0.11 -3.8 231,421 + GFF3407 0.11 +0.5 231,422 - GFF3407 0.11 -0.7 231,422 - GFF3407 0.11 -0.2 231,422 - GFF3407 0.11 +0.9 231,422 - GFF3407 0.11 +1.4 231,422 - GFF3407 0.11 +0.3 231,422 - GFF3407 0.11 -0.4 231,464 - GFF3407 0.20 -0.5 231,543 + GFF3407 0.38 +1.1 231,543 + GFF3407 0.38 +0.2 231,543 + GFF3407 0.38 -2.1 231,543 + GFF3407 0.38 -0.1 231,543 + GFF3407 0.38 +0.6 231,543 + GFF3407 0.38 +0.6 231,543 + GFF3407 0.38 -1.1 231,543 + GFF3407 0.38 +1.3 231,543 + GFF3407 0.38 -1.5 231,543 + GFF3407 0.38 -0.7 231,544 - GFF3407 0.39 +0.7 231,544 - GFF3407 0.39 +1.3 231,544 - GFF3407 0.39 -0.4 231,544 - GFF3407 0.39 -0.8 231,544 - GFF3407 0.39 +0.9 231,544 - GFF3407 0.39 -2.7 231,544 - GFF3407 0.39 -0.5 231,544 - GFF3407 0.39 +0.2 231,891 - +1.2 232,339 + -3.0 232,339 + +1.3 232,339 + -0.4 232,340 - +0.1
Or see this region's nucleotide sequence