Strain Fitness in Variovorax sp. SCN45 around GFF3406

Experiment: Community=arabino-guar; Passage=4

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntGFF3405 and GFF3406 are separated by 132 nucleotidesGFF3406 and GFF3407 are separated by 10 nucleotidesGFF3407 and GFF3408 are separated by 72 nucleotides GFF3405 - Benzoyl-CoA oxygenase component B, at 228,516 to 229,943 GFF3405 GFF3406 - Benzoyl-CoA oxygenase component A, at 230,076 to 231,362 GFF3406 GFF3407 - MaoC domain protein, at 231,373 to 231,816 GFF3407 GFF3408 - hypothetical protein, at 231,889 to 232,320 GFF3408 Position (kb) 230 231 232Strain fitness (log2 ratio) -5 -4 -3 -2 -1 0 1 2 3at 229.143 kb on + strand, within GFF3405at 229.143 kb on + strand, within GFF3405at 229.143 kb on + strand, within GFF3405at 229.144 kb on - strand, within GFF3405at 229.144 kb on - strand, within GFF3405at 229.144 kb on - strand, within GFF3405at 229.144 kb on - strand, within GFF3405at 229.381 kb on - strand, within GFF3405at 229.395 kb on + strand, within GFF3405at 229.395 kb on + strand, within GFF3405at 229.396 kb on - strand, within GFF3405at 229.396 kb on - strand, within GFF3405at 229.452 kb on + strand, within GFF3405at 229.453 kb on - strand, within GFF3405at 229.524 kb on + strand, within GFF3405at 229.524 kb on + strand, within GFF3405at 229.524 kb on + strand, within GFF3405at 229.524 kb on + strand, within GFF3405at 229.524 kb on + strand, within GFF3405at 229.525 kb on - strand, within GFF3405at 229.525 kb on - strand, within GFF3405at 229.525 kb on - strand, within GFF3405at 229.525 kb on - strand, within GFF3405at 229.525 kb on - strand, within GFF3405at 229.926 kb on + strandat 229.927 kb on - strandat 229.927 kb on - strandat 229.950 kb on + strandat 229.950 kb on + strandat 229.959 kb on - strandat 230.064 kb on + strandat 230.064 kb on + strandat 230.065 kb on - strandat 230.065 kb on - strandat 230.065 kb on - strandat 230.199 kb on + strandat 230.199 kb on + strandat 230.199 kb on + strandat 230.199 kb on + strandat 230.200 kb on - strandat 230.200 kb on - strandat 230.200 kb on - strandat 230.200 kb on - strandat 230.200 kb on - strandat 230.200 kb on - strandat 230.301 kb on + strand, within GFF3406at 230.302 kb on - strand, within GFF3406at 230.302 kb on - strand, within GFF3406at 230.302 kb on - strand, within GFF3406at 230.479 kb on - strand, within GFF3406at 230.517 kb on + strand, within GFF3406at 230.517 kb on + strand, within GFF3406at 230.517 kb on + strand, within GFF3406at 230.517 kb on + strand, within GFF3406at 230.518 kb on - strand, within GFF3406at 230.518 kb on - strand, within GFF3406at 230.518 kb on - strand, within GFF3406at 230.518 kb on - strand, within GFF3406at 230.518 kb on - strand, within GFF3406at 230.518 kb on - strand, within GFF3406at 230.518 kb on - strand, within GFF3406at 230.518 kb on - strand, within GFF3406at 230.721 kb on + strand, within GFF3406at 230.760 kb on + strand, within GFF3406at 230.761 kb on - strand, within GFF3406at 230.761 kb on - strand, within GFF3406at 230.838 kb on + strand, within GFF3406at 230.838 kb on + strand, within GFF3406at 230.838 kb on + strand, within GFF3406at 230.838 kb on + strand, within GFF3406at 230.838 kb on + strand, within GFF3406at 230.838 kb on + strand, within GFF3406at 230.838 kb on + strand, within GFF3406at 230.838 kb on + strand, within GFF3406at 230.839 kb on - strand, within GFF3406at 230.839 kb on - strand, within GFF3406at 230.839 kb on - strand, within GFF3406at 230.839 kb on - strand, within GFF3406at 230.842 kb on + strand, within GFF3406at 230.842 kb on + strand, within GFF3406at 230.842 kb on + strand, within GFF3406at 230.842 kb on + strand, within GFF3406at 230.842 kb on + strand, within GFF3406at 230.842 kb on + strand, within GFF3406at 230.842 kb on + strand, within GFF3406at 230.842 kb on + strand, within GFF3406at 230.842 kb on + strand, within GFF3406at 230.843 kb on - strand, within GFF3406at 230.843 kb on - strand, within GFF3406at 230.843 kb on - strand, within GFF3406at 230.843 kb on - strand, within GFF3406at 230.843 kb on - strand, within GFF3406at 230.843 kb on - strand, within GFF3406at 230.843 kb on - strand, within GFF3406at 230.843 kb on - strand, within GFF3406at 230.843 kb on - strand, within GFF3406at 230.843 kb on - strand, within GFF3406at 230.843 kb on - strand, within GFF3406at 230.843 kb on - strand, within GFF3406at 230.843 kb on - strand, within GFF3406at 230.843 kb on - strand, within GFF3406at 230.843 kb on - strand, within GFF3406at 230.843 kb on - strand, within GFF3406at 231.153 kb on + strand, within GFF3406at 231.225 kb on + strand, within GFF3406at 231.225 kb on + strand, within GFF3406at 231.225 kb on + strand, within GFF3406at 231.226 kb on - strand, within GFF3406at 231.226 kb on - strand, within GFF3406at 231.226 kb on - strand, within GFF3406at 231.226 kb on - strand, within GFF3406at 231.226 kb on - strand, within GFF3406at 231.226 kb on - strand, within GFF3406at 231.357 kb on + strandat 231.357 kb on + strandat 231.358 kb on - strandat 231.358 kb on - strandat 231.358 kb on - strandat 231.358 kb on - strandat 231.358 kb on - strandat 231.360 kb on + strandat 231.360 kb on + strandat 231.360 kb on + strandat 231.360 kb on + strandat 231.360 kb on + strandat 231.360 kb on + strandat 231.361 kb on - strandat 231.361 kb on - strandat 231.361 kb on - strandat 231.361 kb on - strandat 231.361 kb on - strandat 231.361 kb on - strandat 231.361 kb on - strandat 231.361 kb on - strandat 231.421 kb on + strand, within GFF3407at 231.421 kb on + strand, within GFF3407at 231.421 kb on + strand, within GFF3407at 231.421 kb on + strand, within GFF3407at 231.421 kb on + strand, within GFF3407at 231.421 kb on + strand, within GFF3407at 231.421 kb on + strand, within GFF3407at 231.421 kb on + strand, within GFF3407at 231.422 kb on - strand, within GFF3407at 231.422 kb on - strand, within GFF3407at 231.422 kb on - strand, within GFF3407at 231.422 kb on - strand, within GFF3407at 231.422 kb on - strand, within GFF3407at 231.422 kb on - strand, within GFF3407at 231.464 kb on - strand, within GFF3407at 231.543 kb on + strand, within GFF3407at 231.543 kb on + strand, within GFF3407at 231.543 kb on + strand, within GFF3407at 231.543 kb on + strand, within GFF3407at 231.543 kb on + strand, within GFF3407at 231.543 kb on + strand, within GFF3407at 231.543 kb on + strand, within GFF3407at 231.543 kb on + strand, within GFF3407at 231.543 kb on + strand, within GFF3407at 231.543 kb on + strand, within GFF3407at 231.544 kb on - strand, within GFF3407at 231.544 kb on - strand, within GFF3407at 231.544 kb on - strand, within GFF3407at 231.544 kb on - strand, within GFF3407at 231.544 kb on - strand, within GFF3407at 231.544 kb on - strand, within GFF3407at 231.544 kb on - strand, within GFF3407at 231.544 kb on - strand, within GFF3407at 231.891 kb on - strandat 232.339 kb on + strandat 232.339 kb on + strandat 232.339 kb on + strandat 232.340 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction Community=arabino-guar; Passage=4
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229,143 + GFF3405 0.44 -3.3
229,143 + GFF3405 0.44 +0.8
229,143 + GFF3405 0.44 +1.1
229,144 - GFF3405 0.44 -1.2
229,144 - GFF3405 0.44 +2.4
229,144 - GFF3405 0.44 -2.1
229,144 - GFF3405 0.44 -4.1
229,381 - GFF3405 0.61 +1.9
229,395 + GFF3405 0.62 -1.1
229,395 + GFF3405 0.62 +2.3
229,396 - GFF3405 0.62 +0.9
229,396 - GFF3405 0.62 -0.2
229,452 + GFF3405 0.66 -1.6
229,453 - GFF3405 0.66 -0.1
229,524 + GFF3405 0.71 -3.8
229,524 + GFF3405 0.71 -0.5
229,524 + GFF3405 0.71 -0.5
229,524 + GFF3405 0.71 +0.2
229,524 + GFF3405 0.71 -3.7
229,525 - GFF3405 0.71 -2.4
229,525 - GFF3405 0.71 +2.1
229,525 - GFF3405 0.71 -1.3
229,525 - GFF3405 0.71 -3.1
229,525 - GFF3405 0.71 -1.5
229,926 + -2.3
229,927 - -1.9
229,927 - -2.7
229,950 + +0.5
229,950 + -0.2
229,959 - -0.6
230,064 + -1.4
230,064 + +2.5
230,065 - +0.7
230,065 - -0.8
230,065 - -0.1
230,199 + -2.3
230,199 + -3.4
230,199 + -3.4
230,199 + -0.9
230,200 - -0.5
230,200 - -1.5
230,200 - -0.3
230,200 - -1.1
230,200 - -0.1
230,200 - -0.3
230,301 + GFF3406 0.17 -1.7
230,302 - GFF3406 0.18 -2.8
230,302 - GFF3406 0.18 -3.8
230,302 - GFF3406 0.18 +1.3
230,479 - GFF3406 0.31 -2.6
230,517 + GFF3406 0.34 -0.7
230,517 + GFF3406 0.34 -2.5
230,517 + GFF3406 0.34 -1.3
230,517 + GFF3406 0.34 +0.7
230,518 - GFF3406 0.34 -1.2
230,518 - GFF3406 0.34 -4.2
230,518 - GFF3406 0.34 +1.3
230,518 - GFF3406 0.34 -0.7
230,518 - GFF3406 0.34 -4.5
230,518 - GFF3406 0.34 -2.3
230,518 - GFF3406 0.34 -0.5
230,518 - GFF3406 0.34 -0.9
230,721 + GFF3406 0.50 +0.7
230,760 + GFF3406 0.53 -2.2
230,761 - GFF3406 0.53 -0.7
230,761 - GFF3406 0.53 -1.2
230,838 + GFF3406 0.59 -2.6
230,838 + GFF3406 0.59 -2.3
230,838 + GFF3406 0.59 -1.4
230,838 + GFF3406 0.59 -1.1
230,838 + GFF3406 0.59 -3.9
230,838 + GFF3406 0.59 -1.2
230,838 + GFF3406 0.59 -1.1
230,838 + GFF3406 0.59 -2.1
230,839 - GFF3406 0.59 -4.3
230,839 - GFF3406 0.59 -1.2
230,839 - GFF3406 0.59 -3.2
230,839 - GFF3406 0.59 -1.4
230,842 + GFF3406 0.60 -3.2
230,842 + GFF3406 0.60 -2.9
230,842 + GFF3406 0.60 -1.4
230,842 + GFF3406 0.60 -3.1
230,842 + GFF3406 0.60 -1.1
230,842 + GFF3406 0.60 -1.1
230,842 + GFF3406 0.60 -2.4
230,842 + GFF3406 0.60 -1.5
230,842 + GFF3406 0.60 -0.1
230,843 - GFF3406 0.60 -1.3
230,843 - GFF3406 0.60 -2.6
230,843 - GFF3406 0.60 -3.2
230,843 - GFF3406 0.60 -0.5
230,843 - GFF3406 0.60 -4.1
230,843 - GFF3406 0.60 -2.0
230,843 - GFF3406 0.60 +0.3
230,843 - GFF3406 0.60 -5.4
230,843 - GFF3406 0.60 -3.7
230,843 - GFF3406 0.60 -1.2
230,843 - GFF3406 0.60 -0.3
230,843 - GFF3406 0.60 -1.6
230,843 - GFF3406 0.60 -2.4
230,843 - GFF3406 0.60 -1.9
230,843 - GFF3406 0.60 -2.4
230,843 - GFF3406 0.60 +0.9
231,153 + GFF3406 0.84 -0.1
231,225 + GFF3406 0.89 -4.0
231,225 + GFF3406 0.89 -3.3
231,225 + GFF3406 0.89 -1.1
231,226 - GFF3406 0.89 -0.3
231,226 - GFF3406 0.89 -2.6
231,226 - GFF3406 0.89 +0.9
231,226 - GFF3406 0.89 -1.7
231,226 - GFF3406 0.89 -4.6
231,226 - GFF3406 0.89 -3.2
231,357 + +0.2
231,357 + -2.3
231,358 - -1.0
231,358 - -1.8
231,358 - -1.4
231,358 - +0.6
231,358 - -1.0
231,360 + -1.3
231,360 + -0.3
231,360 + -2.7
231,360 + -3.8
231,360 + -1.1
231,360 + -0.2
231,361 - +2.9
231,361 - -0.2
231,361 - -1.0
231,361 - -0.9
231,361 - -0.4
231,361 - +0.8
231,361 - -1.3
231,361 - +0.1
231,421 + GFF3407 0.11 -2.8
231,421 + GFF3407 0.11 +1.2
231,421 + GFF3407 0.11 -0.7
231,421 + GFF3407 0.11 -1.6
231,421 + GFF3407 0.11 +0.5
231,421 + GFF3407 0.11 -0.2
231,421 + GFF3407 0.11 -3.8
231,421 + GFF3407 0.11 +0.5
231,422 - GFF3407 0.11 -0.7
231,422 - GFF3407 0.11 -0.2
231,422 - GFF3407 0.11 +0.9
231,422 - GFF3407 0.11 +1.4
231,422 - GFF3407 0.11 +0.3
231,422 - GFF3407 0.11 -0.4
231,464 - GFF3407 0.20 -0.5
231,543 + GFF3407 0.38 +1.1
231,543 + GFF3407 0.38 +0.2
231,543 + GFF3407 0.38 -2.1
231,543 + GFF3407 0.38 -0.1
231,543 + GFF3407 0.38 +0.6
231,543 + GFF3407 0.38 +0.6
231,543 + GFF3407 0.38 -1.1
231,543 + GFF3407 0.38 +1.3
231,543 + GFF3407 0.38 -1.5
231,543 + GFF3407 0.38 -0.7
231,544 - GFF3407 0.39 +0.7
231,544 - GFF3407 0.39 +1.3
231,544 - GFF3407 0.39 -0.4
231,544 - GFF3407 0.39 -0.8
231,544 - GFF3407 0.39 +0.9
231,544 - GFF3407 0.39 -2.7
231,544 - GFF3407 0.39 -0.5
231,544 - GFF3407 0.39 +0.2
231,891 - +1.2
232,339 + -3.0
232,339 + +1.3
232,339 + -0.4
232,340 - +0.1

Or see this region's nucleotide sequence