Strain Fitness in Variovorax sp. SCN45 around GFF3401

Experiment: Community=arabino-guar; Passage=4

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntGFF3400 and GFF3401 are separated by 124 nucleotidesGFF3401 and GFF3402 are separated by 17 nucleotidesGFF3402 and GFF3403 overlap by 4 nucleotides GFF3400 - Benzaldehyde dehydrogenase, at 223,380 to 224,930 GFF3400 GFF3401 - P-hydroxylaminobenzoate lyase, at 225,055 to 225,546 GFF3401 GFF3402 - no description, at 225,564 to 225,713 GFF3402 GFF3403 - Benzoate catabolism regulator with shikimate kinase domain, at 225,710 to 226,654 GFF3403 Position (kb) 225 226Strain fitness (log2 ratio) -4 -3 -2 -1 0 1 2 3 4at 224.295 kb on + strand, within GFF3400at 224.295 kb on + strand, within GFF3400at 224.296 kb on - strand, within GFF3400at 224.296 kb on - strand, within GFF3400at 224.596 kb on + strand, within GFF3400at 224.680 kb on + strand, within GFF3400at 224.680 kb on + strand, within GFF3400at 224.681 kb on - strand, within GFF3400at 224.681 kb on - strand, within GFF3400at 224.681 kb on - strand, within GFF3400at 224.681 kb on - strand, within GFF3400at 224.683 kb on + strand, within GFF3400at 224.683 kb on + strand, within GFF3400at 224.683 kb on + strand, within GFF3400at 224.683 kb on + strand, within GFF3400at 224.683 kb on + strand, within GFF3400at 224.746 kb on + strand, within GFF3400at 224.746 kb on + strand, within GFF3400at 224.747 kb on - strand, within GFF3400at 224.747 kb on - strand, within GFF3400at 224.908 kb on + strandat 224.908 kb on + strandat 224.908 kb on + strandat 224.908 kb on + strandat 224.908 kb on + strandat 224.909 kb on - strandat 224.909 kb on - strandat 224.909 kb on - strandat 224.909 kb on - strandat 224.909 kb on - strandat 224.909 kb on - strandat 224.909 kb on - strandat 224.909 kb on - strandat 225.051 kb on + strandat 225.051 kb on + strandat 225.051 kb on + strandat 225.052 kb on - strandat 225.052 kb on - strandat 225.052 kb on - strandat 225.052 kb on - strandat 225.052 kb on - strandat 225.058 kb on + strandat 225.058 kb on + strandat 225.058 kb on + strandat 225.058 kb on + strandat 225.059 kb on - strandat 225.059 kb on - strandat 225.059 kb on - strandat 225.059 kb on - strandat 225.092 kb on + strandat 225.092 kb on + strandat 225.093 kb on - strandat 225.093 kb on - strandat 225.093 kb on - strandat 225.323 kb on + strand, within GFF3401at 225.324 kb on - strand, within GFF3401at 225.563 kb on + strandat 225.563 kb on + strandat 225.563 kb on + strandat 225.564 kb on - strandat 225.570 kb on + strandat 225.570 kb on + strandat 225.570 kb on + strandat 225.570 kb on + strandat 225.570 kb on + strandat 225.571 kb on - strandat 225.571 kb on - strandat 225.571 kb on - strandat 225.571 kb on - strandat 225.571 kb on - strandat 225.619 kb on + strand, within GFF3402at 225.619 kb on + strand, within GFF3402at 225.619 kb on + strand, within GFF3402at 225.620 kb on - strand, within GFF3402at 225.620 kb on - strand, within GFF3402at 225.620 kb on - strand, within GFF3402at 225.620 kb on - strand, within GFF3402at 225.723 kb on + strandat 225.723 kb on + strandat 225.723 kb on + strandat 225.723 kb on + strandat 225.724 kb on - strandat 225.724 kb on - strandat 225.724 kb on - strandat 225.724 kb on - strandat 225.917 kb on + strand, within GFF3403at 225.918 kb on - strand, within GFF3403at 225.918 kb on - strand, within GFF3403at 225.918 kb on - strand, within GFF3403at 226.280 kb on + strand, within GFF3403at 226.280 kb on + strand, within GFF3403at 226.280 kb on + strand, within GFF3403at 226.281 kb on - strand, within GFF3403at 226.281 kb on - strand, within GFF3403at 226.281 kb on - strand, within GFF3403at 226.281 kb on - strand, within GFF3403at 226.281 kb on - strand, within GFF3403at 226.296 kb on - strand, within GFF3403at 226.304 kb on + strand, within GFF3403at 226.304 kb on + strand, within GFF3403at 226.304 kb on + strand, within GFF3403at 226.340 kb on + strand, within GFF3403at 226.340 kb on + strand, within GFF3403at 226.340 kb on + strand, within GFF3403at 226.340 kb on + strand, within GFF3403at 226.340 kb on + strand, within GFF3403at 226.341 kb on - strand, within GFF3403at 226.341 kb on - strand, within GFF3403at 226.341 kb on - strand, within GFF3403

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Per-strain Table

Position Strand Gene LocusTag Fraction Community=arabino-guar; Passage=4
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224,295 + GFF3400 0.59 +3.1
224,295 + GFF3400 0.59 -1.0
224,296 - GFF3400 0.59 -0.2
224,296 - GFF3400 0.59 +1.6
224,596 + GFF3400 0.78 +0.4
224,680 + GFF3400 0.84 -0.3
224,680 + GFF3400 0.84 +2.0
224,681 - GFF3400 0.84 -3.1
224,681 - GFF3400 0.84 -1.9
224,681 - GFF3400 0.84 +0.7
224,681 - GFF3400 0.84 -2.1
224,683 + GFF3400 0.84 +1.3
224,683 + GFF3400 0.84 -1.1
224,683 + GFF3400 0.84 -1.5
224,683 + GFF3400 0.84 -3.2
224,683 + GFF3400 0.84 +0.3
224,746 + GFF3400 0.88 -0.6
224,746 + GFF3400 0.88 -2.3
224,747 - GFF3400 0.88 -3.2
224,747 - GFF3400 0.88 -1.1
224,908 + -1.2
224,908 + +0.3
224,908 + -2.2
224,908 + -0.7
224,908 + -1.3
224,909 - -0.7
224,909 - -3.8
224,909 - -1.3
224,909 - +1.0
224,909 - -0.1
224,909 - -0.1
224,909 - -0.3
224,909 - -2.3
225,051 + +1.2
225,051 + +0.1
225,051 + -3.0
225,052 - -0.1
225,052 - -1.1
225,052 - +0.7
225,052 - -1.2
225,052 - +0.4
225,058 + +0.5
225,058 + +0.9
225,058 + -2.2
225,058 + +0.3
225,059 - -0.1
225,059 - -0.5
225,059 - -0.1
225,059 - +0.3
225,092 + -0.8
225,092 + -2.1
225,093 - -1.3
225,093 - -0.3
225,093 - -2.7
225,323 + GFF3401 0.54 -1.8
225,324 - GFF3401 0.55 -1.5
225,563 + -0.7
225,563 + -1.0
225,563 + +0.7
225,564 - -1.5
225,570 + -1.5
225,570 + -0.0
225,570 + -1.8
225,570 + -1.4
225,570 + -0.3
225,571 - +0.5
225,571 - -2.3
225,571 - +1.6
225,571 - +0.7
225,571 - +1.6
225,619 + GFF3402 0.37 -0.1
225,619 + GFF3402 0.37 +1.2
225,619 + GFF3402 0.37 +1.3
225,620 - GFF3402 0.37 -0.1
225,620 - GFF3402 0.37 -1.5
225,620 - GFF3402 0.37 -0.3
225,620 - GFF3402 0.37 -1.8
225,723 + +4.4
225,723 + -2.4
225,723 + -0.1
225,723 + +1.8
225,724 - +0.2
225,724 - +1.9
225,724 - +1.8
225,724 - -1.5
225,917 + GFF3403 0.22 +2.7
225,918 - GFF3403 0.22 -0.1
225,918 - GFF3403 0.22 -3.0
225,918 - GFF3403 0.22 +0.3
226,280 + GFF3403 0.60 -1.4
226,280 + GFF3403 0.60 +0.9
226,280 + GFF3403 0.60 -3.2
226,281 - GFF3403 0.60 +0.6
226,281 - GFF3403 0.60 -1.3
226,281 - GFF3403 0.60 -0.1
226,281 - GFF3403 0.60 +1.3
226,281 - GFF3403 0.60 -3.8
226,296 - GFF3403 0.62 +0.6
226,304 + GFF3403 0.63 -0.8
226,304 + GFF3403 0.63 -1.6
226,304 + GFF3403 0.63 -3.3
226,340 + GFF3403 0.67 -1.5
226,340 + GFF3403 0.67 -1.7
226,340 + GFF3403 0.67 -1.2
226,340 + GFF3403 0.67 +1.0
226,340 + GFF3403 0.67 -2.4
226,341 - GFF3403 0.67 +0.2
226,341 - GFF3403 0.67 -1.7
226,341 - GFF3403 0.67 -0.3

Or see this region's nucleotide sequence