Experiment: Community=arabino-guar; Passage=4
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt GFF3397 and GFF3398 overlap by 4 nucleotides GFF3398 and GFF3399 are separated by 142 nucleotides
GFF3397 - Benzoate ABC transporter, substrate-binding protein, at 219,681 to 220,853
GFF3397
GFF3398 - benzoate degradation ring-cleavage hydrolase, at 220,850 to 221,659
GFF3398
GFF3399 - Benzoate--CoA ligase (EC 6.2.1.25), at 221,802 to 223,349
GFF3399
Position (kb) 220
221
222 Strain fitness (log2 ratio) -4
-3
-2
-1
0
1 at 219.906 kb on + strand, within GFF3397 at 219.906 kb on + strand, within GFF3397 at 219.906 kb on + strand, within GFF3397 at 219.907 kb on - strand, within GFF3397 at 219.907 kb on - strand, within GFF3397 at 219.925 kb on + strand, within GFF3397 at 219.940 kb on + strand, within GFF3397 at 219.940 kb on + strand, within GFF3397 at 219.973 kb on + strand, within GFF3397 at 220.022 kb on - strand, within GFF3397 at 220.180 kb on + strand, within GFF3397 at 220.180 kb on + strand, within GFF3397 at 220.181 kb on - strand, within GFF3397 at 220.330 kb on + strand, within GFF3397 at 220.396 kb on + strand, within GFF3397 at 220.642 kb on + strand, within GFF3397 at 220.642 kb on + strand, within GFF3397 at 220.643 kb on - strand, within GFF3397 at 220.687 kb on + strand, within GFF3397 at 220.729 kb on + strand, within GFF3397 at 220.729 kb on + strand, within GFF3397 at 220.729 kb on + strand, within GFF3397 at 220.730 kb on - strand, within GFF3397 at 220.730 kb on - strand, within GFF3397 at 220.730 kb on - strand, within GFF3397 at 221.014 kb on - strand, within GFF3398 at 221.188 kb on - strand, within GFF3398 at 221.292 kb on + strand, within GFF3398 at 221.292 kb on + strand, within GFF3398 at 221.292 kb on + strand, within GFF3398 at 221.292 kb on + strand, within GFF3398 at 221.293 kb on - strand, within GFF3398 at 221.897 kb on - strand at 221.902 kb on + strand at 221.902 kb on + strand at 221.903 kb on - strand at 221.903 kb on - strand at 222.085 kb on + strand, within GFF3399 at 222.085 kb on + strand, within GFF3399 at 222.085 kb on + strand, within GFF3399 at 222.085 kb on + strand, within GFF3399 at 222.085 kb on + strand, within GFF3399 at 222.086 kb on - strand, within GFF3399 at 222.086 kb on - strand, within GFF3399 at 222.086 kb on - strand, within GFF3399 at 222.086 kb on - strand, within GFF3399 at 222.086 kb on - strand, within GFF3399 at 222.086 kb on - strand, within GFF3399 at 222.086 kb on - strand, within GFF3399 at 222.086 kb on - strand, within GFF3399 at 222.086 kb on - strand, within GFF3399 at 222.127 kb on + strand, within GFF3399 at 222.127 kb on + strand, within GFF3399 at 222.128 kb on - strand, within GFF3399 at 222.137 kb on - strand, within GFF3399 at 222.157 kb on + strand, within GFF3399 at 222.158 kb on - strand, within GFF3399 at 222.158 kb on - strand, within GFF3399 at 222.223 kb on + strand, within GFF3399 at 222.224 kb on - strand, within GFF3399 at 222.253 kb on + strand, within GFF3399 at 222.253 kb on + strand, within GFF3399 at 222.253 kb on + strand, within GFF3399 at 222.253 kb on + strand, within GFF3399 at 222.254 kb on - strand, within GFF3399 at 222.254 kb on - strand, within GFF3399
Per-strain Table
Position Strand Gene LocusTag Fraction Community=arabino-guar; Passage=4 remove 219,906 + GFF3397 0.19 -0.6 219,906 + GFF3397 0.19 -0.3 219,906 + GFF3397 0.19 -2.1 219,907 - GFF3397 0.19 +0.2 219,907 - GFF3397 0.19 +0.2 219,925 + GFF3397 0.21 -1.1 219,940 + GFF3397 0.22 +0.6 219,940 + GFF3397 0.22 -0.6 219,973 + GFF3397 0.25 -0.5 220,022 - GFF3397 0.29 +0.8 220,180 + GFF3397 0.43 -0.4 220,180 + GFF3397 0.43 -2.9 220,181 - GFF3397 0.43 -0.7 220,330 + GFF3397 0.55 +0.6 220,396 + GFF3397 0.61 -2.9 220,642 + GFF3397 0.82 -0.8 220,642 + GFF3397 0.82 -0.3 220,643 - GFF3397 0.82 -1.3 220,687 + GFF3397 0.86 -1.1 220,729 + GFF3397 0.89 +0.7 220,729 + GFF3397 0.89 -1.6 220,729 + GFF3397 0.89 -0.5 220,730 - GFF3397 0.89 -0.5 220,730 - GFF3397 0.89 +1.3 220,730 - GFF3397 0.89 -0.1 221,014 - GFF3398 0.20 +0.7 221,188 - GFF3398 0.42 -0.5 221,292 + GFF3398 0.55 -0.0 221,292 + GFF3398 0.55 -2.1 221,292 + GFF3398 0.55 -1.2 221,292 + GFF3398 0.55 -1.4 221,293 - GFF3398 0.55 -2.6 221,897 - -0.3 221,902 + +0.0 221,902 + -1.4 221,903 - -2.1 221,903 - +0.5 222,085 + GFF3399 0.18 -0.7 222,085 + GFF3399 0.18 +0.4 222,085 + GFF3399 0.18 -2.0 222,085 + GFF3399 0.18 -0.4 222,085 + GFF3399 0.18 -0.7 222,086 - GFF3399 0.18 -0.2 222,086 - GFF3399 0.18 -0.2 222,086 - GFF3399 0.18 -0.6 222,086 - GFF3399 0.18 -0.5 222,086 - GFF3399 0.18 +1.4 222,086 - GFF3399 0.18 -0.5 222,086 - GFF3399 0.18 -4.4 222,086 - GFF3399 0.18 +1.5 222,086 - GFF3399 0.18 +1.0 222,127 + GFF3399 0.21 -2.5 222,127 + GFF3399 0.21 +0.4 222,128 - GFF3399 0.21 -2.0 222,137 - GFF3399 0.22 -0.7 222,157 + GFF3399 0.23 +0.3 222,158 - GFF3399 0.23 +1.0 222,158 - GFF3399 0.23 -0.7 222,223 + GFF3399 0.27 -0.7 222,224 - GFF3399 0.27 -1.1 222,253 + GFF3399 0.29 -2.8 222,253 + GFF3399 0.29 -0.1 222,253 + GFF3399 0.29 -0.3 222,253 + GFF3399 0.29 +1.3 222,254 - GFF3399 0.29 -3.7 222,254 - GFF3399 0.29 +0.6
Or see this region's nucleotide sequence