Experiment: Community=arabino-guar; Passage=4
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt GFF3322 and GFF3323 are separated by 181 nucleotides GFF3323 and GFF3324 are separated by 7 nucleotides GFF3324 and GFF3325 are separated by 17 nucleotides GFF3325 and GFF3326 are separated by 8 nucleotides
GFF3322 - hypothetical protein, at 148,892 to 149,752
GFF3322
GFF3323 - Tricarboxylate transport transcriptional regulator TctD, at 149,934 to 150,578
GFF3323
GFF3324 - hypothetical protein, at 150,586 to 151,980
GFF3324
GFF3325 - Uncharacterized protein YaeR with similarity to glyoxylase family, at 151,998 to 152,753
GFF3325
GFF3326 - hypothetical protein, at 152,762 to 153,223
GFF3326
Position (kb) 150
151
152 Strain fitness (log2 ratio) -3
-2
-1
0
1
2 at 149.613 kb on + strand, within GFF3322 at 149.789 kb on + strand at 149.790 kb on - strand at 149.790 kb on - strand at 149.790 kb on - strand at 149.790 kb on - strand at 149.790 kb on - strand at 149.790 kb on - strand at 149.790 kb on - strand at 149.800 kb on + strand at 149.800 kb on + strand at 149.800 kb on + strand at 149.801 kb on - strand at 149.801 kb on - strand at 149.801 kb on - strand at 149.868 kb on + strand at 150.555 kb on + strand at 150.555 kb on + strand at 150.725 kb on - strand at 150.770 kb on - strand, within GFF3324 at 150.871 kb on + strand, within GFF3324 at 150.872 kb on - strand, within GFF3324 at 150.976 kb on + strand, within GFF3324 at 150.976 kb on + strand, within GFF3324 at 150.976 kb on + strand, within GFF3324 at 150.977 kb on - strand, within GFF3324 at 151.106 kb on - strand, within GFF3324 at 151.430 kb on + strand, within GFF3324 at 151.430 kb on + strand, within GFF3324 at 151.430 kb on + strand, within GFF3324 at 151.431 kb on - strand, within GFF3324 at 151.431 kb on - strand, within GFF3324 at 151.431 kb on - strand, within GFF3324 at 151.431 kb on - strand, within GFF3324 at 151.431 kb on - strand, within GFF3324 at 151.657 kb on + strand, within GFF3324 at 151.658 kb on - strand, within GFF3324 at 151.658 kb on - strand, within GFF3324 at 151.658 kb on - strand, within GFF3324 at 151.717 kb on + strand, within GFF3324 at 151.732 kb on - strand, within GFF3324 at 152.122 kb on + strand, within GFF3325 at 152.123 kb on - strand, within GFF3325 at 152.232 kb on + strand, within GFF3325 at 152.233 kb on - strand, within GFF3325 at 152.377 kb on + strand, within GFF3325 at 152.378 kb on - strand, within GFF3325 at 152.378 kb on - strand, within GFF3325 at 152.378 kb on - strand, within GFF3325 at 152.434 kb on + strand, within GFF3325 at 152.434 kb on + strand, within GFF3325 at 152.434 kb on + strand, within GFF3325 at 152.435 kb on - strand, within GFF3325 at 152.686 kb on + strand at 152.687 kb on - strand at 152.687 kb on - strand at 152.708 kb on - strand at 152.820 kb on + strand, within GFF3326 at 152.820 kb on + strand, within GFF3326 at 152.820 kb on + strand, within GFF3326 at 152.821 kb on - strand, within GFF3326 at 152.821 kb on - strand, within GFF3326 at 152.886 kb on + strand, within GFF3326 at 152.887 kb on - strand, within GFF3326 at 152.887 kb on - strand, within GFF3326 at 152.887 kb on - strand, within GFF3326
Per-strain Table
Position Strand Gene LocusTag Fraction Community=arabino-guar; Passage=4 remove 149,613 + GFF3322 0.84 +1.6 149,789 + +2.0 149,790 - +2.1 149,790 - +1.4 149,790 - -2.0 149,790 - -1.3 149,790 - -1.4 149,790 - -1.7 149,790 - +2.7 149,800 + -0.4 149,800 + +0.3 149,800 + -0.7 149,801 - +0.2 149,801 - -0.1 149,801 - -1.2 149,868 + -0.9 150,555 + -0.5 150,555 + -2.1 150,725 - -2.5 150,770 - GFF3324 0.13 -0.3 150,871 + GFF3324 0.20 +0.4 150,872 - GFF3324 0.21 +0.4 150,976 + GFF3324 0.28 +0.3 150,976 + GFF3324 0.28 -2.2 150,976 + GFF3324 0.28 -0.5 150,977 - GFF3324 0.28 -1.2 151,106 - GFF3324 0.37 -2.2 151,430 + GFF3324 0.61 -3.3 151,430 + GFF3324 0.61 -0.3 151,430 + GFF3324 0.61 -0.6 151,431 - GFF3324 0.61 +0.8 151,431 - GFF3324 0.61 -1.3 151,431 - GFF3324 0.61 -0.7 151,431 - GFF3324 0.61 -0.6 151,431 - GFF3324 0.61 +0.3 151,657 + GFF3324 0.77 +0.7 151,658 - GFF3324 0.77 -0.9 151,658 - GFF3324 0.77 -3.7 151,658 - GFF3324 0.77 +0.7 151,717 + GFF3324 0.81 +1.8 151,732 - GFF3324 0.82 -0.8 152,122 + GFF3325 0.16 -3.3 152,123 - GFF3325 0.17 -0.0 152,232 + GFF3325 0.31 -0.7 152,233 - GFF3325 0.31 +0.2 152,377 + GFF3325 0.50 +0.5 152,378 - GFF3325 0.50 +1.1 152,378 - GFF3325 0.50 +0.6 152,378 - GFF3325 0.50 +2.0 152,434 + GFF3325 0.58 -0.2 152,434 + GFF3325 0.58 -0.7 152,434 + GFF3325 0.58 -0.3 152,435 - GFF3325 0.58 +0.0 152,686 + +1.5 152,687 - +2.0 152,687 - +2.7 152,708 - +0.5 152,820 + GFF3326 0.13 -1.9 152,820 + GFF3326 0.13 -1.6 152,820 + GFF3326 0.13 +1.1 152,821 - GFF3326 0.13 -0.6 152,821 - GFF3326 0.13 -0.2 152,886 + GFF3326 0.27 +0.3 152,887 - GFF3326 0.27 -3.5 152,887 - GFF3326 0.27 +1.0 152,887 - GFF3326 0.27 -2.3
Or see this region's nucleotide sequence