Strain Fitness in Variovorax sp. SCN45 around GFF3300

Experiment: Community=arabino-guar; Passage=4

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntGFF3299 and GFF3300 are separated by 46 nucleotidesGFF3300 and GFF3301 overlap by 4 nucleotides GFF3299 - Pirin, at 123,322 to 124,218 GFF3299 GFF3300 - hypothetical protein, at 124,265 to 124,822 GFF3300 GFF3301 - Lignostilbene-alpha,beta-dioxygenase and related enzymes, at 124,819 to 126,246 GFF3301 Position (kb) 124 125Strain fitness (log2 ratio) -4 -3 -2 -1 0 1 2 3 4at 123.294 kb on + strandat 123.306 kb on + strandat 123.307 kb on - strandat 123.307 kb on - strandat 123.307 kb on - strandat 123.307 kb on - strandat 123.398 kb on + strandat 123.399 kb on - strandat 123.575 kb on + strand, within GFF3299at 123.576 kb on - strand, within GFF3299at 123.576 kb on - strand, within GFF3299at 123.576 kb on - strand, within GFF3299at 123.576 kb on - strand, within GFF3299at 123.647 kb on + strand, within GFF3299at 123.647 kb on + strand, within GFF3299at 123.648 kb on - strand, within GFF3299at 123.648 kb on - strand, within GFF3299at 123.968 kb on + strand, within GFF3299at 123.968 kb on + strand, within GFF3299at 123.968 kb on + strand, within GFF3299at 123.968 kb on + strand, within GFF3299at 123.968 kb on + strand, within GFF3299at 123.968 kb on + strand, within GFF3299at 123.968 kb on + strand, within GFF3299at 123.968 kb on + strand, within GFF3299at 123.968 kb on + strand, within GFF3299at 123.968 kb on + strand, within GFF3299at 123.968 kb on + strand, within GFF3299at 123.968 kb on + strand, within GFF3299at 123.968 kb on + strand, within GFF3299at 123.968 kb on + strand, within GFF3299at 123.968 kb on + strand, within GFF3299at 123.968 kb on + strand, within GFF3299at 123.969 kb on - strand, within GFF3299at 123.969 kb on - strand, within GFF3299at 123.969 kb on - strand, within GFF3299at 123.969 kb on - strand, within GFF3299at 123.969 kb on - strand, within GFF3299at 123.969 kb on - strand, within GFF3299at 123.969 kb on - strand, within GFF3299at 123.969 kb on - strand, within GFF3299at 123.969 kb on - strand, within GFF3299at 123.969 kb on - strand, within GFF3299at 123.969 kb on - strand, within GFF3299at 123.969 kb on - strand, within GFF3299at 123.969 kb on - strand, within GFF3299at 123.969 kb on - strand, within GFF3299at 123.969 kb on - strand, within GFF3299at 124.020 kb on - strand, within GFF3299at 124.020 kb on - strand, within GFF3299at 124.020 kb on - strand, within GFF3299at 124.061 kb on + strand, within GFF3299at 124.061 kb on + strand, within GFF3299at 124.061 kb on + strand, within GFF3299at 124.061 kb on + strand, within GFF3299at 124.062 kb on - strand, within GFF3299at 124.062 kb on - strand, within GFF3299at 124.236 kb on - strandat 124.305 kb on + strandat 124.306 kb on - strandat 124.306 kb on - strandat 124.386 kb on + strand, within GFF3300at 124.386 kb on + strand, within GFF3300at 124.386 kb on + strand, within GFF3300at 124.386 kb on + strand, within GFF3300at 124.386 kb on + strand, within GFF3300at 124.386 kb on + strand, within GFF3300at 124.386 kb on + strand, within GFF3300at 124.387 kb on - strand, within GFF3300at 124.387 kb on - strand, within GFF3300at 124.387 kb on - strand, within GFF3300at 124.387 kb on - strand, within GFF3300at 124.387 kb on - strand, within GFF3300at 124.387 kb on - strand, within GFF3300at 124.387 kb on - strand, within GFF3300at 124.387 kb on - strand, within GFF3300at 124.512 kb on + strand, within GFF3300at 124.513 kb on - strand, within GFF3300at 124.629 kb on + strand, within GFF3300at 124.629 kb on + strand, within GFF3300at 124.629 kb on + strand, within GFF3300at 124.629 kb on + strand, within GFF3300at 124.630 kb on - strand, within GFF3300at 124.630 kb on - strand, within GFF3300at 124.630 kb on - strand, within GFF3300at 125.069 kb on + strand, within GFF3301at 125.069 kb on + strand, within GFF3301at 125.069 kb on + strand, within GFF3301at 125.069 kb on + strand, within GFF3301at 125.069 kb on + strand, within GFF3301at 125.069 kb on + strand, within GFF3301at 125.069 kb on + strand, within GFF3301at 125.069 kb on + strand, within GFF3301at 125.069 kb on + strand, within GFF3301at 125.069 kb on + strand, within GFF3301at 125.069 kb on + strand, within GFF3301at 125.069 kb on + strand, within GFF3301at 125.070 kb on - strand, within GFF3301at 125.070 kb on - strand, within GFF3301at 125.070 kb on - strand, within GFF3301at 125.070 kb on - strand, within GFF3301at 125.070 kb on - strand, within GFF3301at 125.070 kb on - strand, within GFF3301at 125.117 kb on + strand, within GFF3301at 125.117 kb on + strand, within GFF3301at 125.118 kb on - strand, within GFF3301at 125.118 kb on - strand, within GFF3301at 125.118 kb on - strand, within GFF3301at 125.118 kb on - strand, within GFF3301at 125.162 kb on + strand, within GFF3301at 125.162 kb on + strand, within GFF3301at 125.162 kb on + strand, within GFF3301at 125.162 kb on + strand, within GFF3301at 125.162 kb on + strand, within GFF3301at 125.162 kb on + strand, within GFF3301at 125.163 kb on - strand, within GFF3301at 125.163 kb on - strand, within GFF3301at 125.163 kb on - strand, within GFF3301at 125.163 kb on - strand, within GFF3301at 125.163 kb on - strand, within GFF3301at 125.163 kb on - strand, within GFF3301at 125.163 kb on - strand, within GFF3301at 125.163 kb on - strand, within GFF3301at 125.163 kb on - strand, within GFF3301at 125.163 kb on - strand, within GFF3301at 125.177 kb on + strand, within GFF3301at 125.178 kb on - strand, within GFF3301at 125.356 kb on - strand, within GFF3301at 125.423 kb on + strand, within GFF3301at 125.423 kb on + strand, within GFF3301at 125.423 kb on + strand, within GFF3301at 125.423 kb on + strand, within GFF3301at 125.423 kb on + strand, within GFF3301at 125.423 kb on + strand, within GFF3301at 125.423 kb on + strand, within GFF3301at 125.423 kb on + strand, within GFF3301at 125.423 kb on + strand, within GFF3301at 125.423 kb on + strand, within GFF3301at 125.423 kb on + strand, within GFF3301at 125.423 kb on + strand, within GFF3301at 125.423 kb on + strand, within GFF3301at 125.424 kb on - strand, within GFF3301at 125.424 kb on - strand, within GFF3301at 125.424 kb on - strand, within GFF3301at 125.424 kb on - strand, within GFF3301at 125.424 kb on - strand, within GFF3301at 125.424 kb on - strand, within GFF3301at 125.424 kb on - strand, within GFF3301at 125.424 kb on - strand, within GFF3301at 125.424 kb on - strand, within GFF3301at 125.424 kb on - strand, within GFF3301at 125.424 kb on - strand, within GFF3301at 125.424 kb on - strand, within GFF3301at 125.424 kb on - strand, within GFF3301at 125.424 kb on - strand, within GFF3301at 125.498 kb on + strand, within GFF3301at 125.499 kb on - strand, within GFF3301at 125.499 kb on - strand, within GFF3301at 125.621 kb on + strand, within GFF3301at 125.622 kb on - strand, within GFF3301at 125.622 kb on - strand, within GFF3301

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Per-strain Table

Position Strand Gene LocusTag Fraction Community=arabino-guar; Passage=4
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123,294 + +0.1
123,306 + -1.4
123,307 - +1.6
123,307 - +0.7
123,307 - +0.7
123,307 - -2.1
123,398 + -1.1
123,399 - -2.0
123,575 + GFF3299 0.28 +0.0
123,576 - GFF3299 0.28 +1.9
123,576 - GFF3299 0.28 +0.1
123,576 - GFF3299 0.28 +0.7
123,576 - GFF3299 0.28 -1.6
123,647 + GFF3299 0.36 +0.5
123,647 + GFF3299 0.36 -0.0
123,648 - GFF3299 0.36 -0.5
123,648 - GFF3299 0.36 -0.3
123,968 + GFF3299 0.72 -0.7
123,968 + GFF3299 0.72 -2.6
123,968 + GFF3299 0.72 -2.3
123,968 + GFF3299 0.72 +0.4
123,968 + GFF3299 0.72 -3.2
123,968 + GFF3299 0.72 +0.4
123,968 + GFF3299 0.72 +1.1
123,968 + GFF3299 0.72 -1.3
123,968 + GFF3299 0.72 +0.3
123,968 + GFF3299 0.72 +0.7
123,968 + GFF3299 0.72 -0.2
123,968 + GFF3299 0.72 -1.6
123,968 + GFF3299 0.72 -1.1
123,968 + GFF3299 0.72 -2.4
123,968 + GFF3299 0.72 -0.1
123,968 + GFF3299 0.72 +1.9
123,969 - GFF3299 0.72 -0.9
123,969 - GFF3299 0.72 +2.7
123,969 - GFF3299 0.72 -0.5
123,969 - GFF3299 0.72 -1.6
123,969 - GFF3299 0.72 -0.3
123,969 - GFF3299 0.72 +0.7
123,969 - GFF3299 0.72 -0.2
123,969 - GFF3299 0.72 +2.3
123,969 - GFF3299 0.72 +3.1
123,969 - GFF3299 0.72 -2.3
123,969 - GFF3299 0.72 +1.7
123,969 - GFF3299 0.72 +2.3
123,969 - GFF3299 0.72 +0.3
123,969 - GFF3299 0.72 -0.5
123,969 - GFF3299 0.72 -3.9
124,020 - GFF3299 0.78 -0.8
124,020 - GFF3299 0.78 +0.9
124,020 - GFF3299 0.78 +0.6
124,061 + GFF3299 0.82 +0.8
124,061 + GFF3299 0.82 +0.9
124,061 + GFF3299 0.82 -3.3
124,061 + GFF3299 0.82 +0.5
124,062 - GFF3299 0.82 -1.1
124,062 - GFF3299 0.82 +0.2
124,236 - +0.2
124,305 + -2.9
124,306 - +0.4
124,306 - +1.6
124,386 + GFF3300 0.22 +2.9
124,386 + GFF3300 0.22 +0.3
124,386 + GFF3300 0.22 +0.7
124,386 + GFF3300 0.22 +2.0
124,386 + GFF3300 0.22 +1.5
124,386 + GFF3300 0.22 -0.4
124,386 + GFF3300 0.22 -1.3
124,387 - GFF3300 0.22 +2.0
124,387 - GFF3300 0.22 -0.5
124,387 - GFF3300 0.22 +2.3
124,387 - GFF3300 0.22 -0.6
124,387 - GFF3300 0.22 -0.6
124,387 - GFF3300 0.22 -2.1
124,387 - GFF3300 0.22 +0.7
124,387 - GFF3300 0.22 -2.1
124,512 + GFF3300 0.44 -0.3
124,513 - GFF3300 0.44 -0.2
124,629 + GFF3300 0.65 -0.9
124,629 + GFF3300 0.65 -2.3
124,629 + GFF3300 0.65 +0.5
124,629 + GFF3300 0.65 +2.2
124,630 - GFF3300 0.65 +0.4
124,630 - GFF3300 0.65 +1.5
124,630 - GFF3300 0.65 +1.8
125,069 + GFF3301 0.18 -1.0
125,069 + GFF3301 0.18 -1.0
125,069 + GFF3301 0.18 +0.3
125,069 + GFF3301 0.18 +0.2
125,069 + GFF3301 0.18 -3.3
125,069 + GFF3301 0.18 +0.4
125,069 + GFF3301 0.18 +1.4
125,069 + GFF3301 0.18 -1.5
125,069 + GFF3301 0.18 -0.5
125,069 + GFF3301 0.18 -1.2
125,069 + GFF3301 0.18 -0.3
125,069 + GFF3301 0.18 +1.1
125,070 - GFF3301 0.18 -0.3
125,070 - GFF3301 0.18 -1.4
125,070 - GFF3301 0.18 +0.5
125,070 - GFF3301 0.18 +1.9
125,070 - GFF3301 0.18 +0.6
125,070 - GFF3301 0.18 -0.6
125,117 + GFF3301 0.21 -3.0
125,117 + GFF3301 0.21 -0.7
125,118 - GFF3301 0.21 +0.2
125,118 - GFF3301 0.21 -0.3
125,118 - GFF3301 0.21 +0.5
125,118 - GFF3301 0.21 -1.6
125,162 + GFF3301 0.24 -0.3
125,162 + GFF3301 0.24 +0.3
125,162 + GFF3301 0.24 -0.5
125,162 + GFF3301 0.24 -0.3
125,162 + GFF3301 0.24 -3.5
125,162 + GFF3301 0.24 -3.3
125,163 - GFF3301 0.24 +0.6
125,163 - GFF3301 0.24 +0.5
125,163 - GFF3301 0.24 -0.5
125,163 - GFF3301 0.24 +0.1
125,163 - GFF3301 0.24 -1.4
125,163 - GFF3301 0.24 -3.6
125,163 - GFF3301 0.24 -0.7
125,163 - GFF3301 0.24 -0.1
125,163 - GFF3301 0.24 -0.7
125,163 - GFF3301 0.24 -1.6
125,177 + GFF3301 0.25 -0.3
125,178 - GFF3301 0.25 +0.6
125,356 - GFF3301 0.38 -0.9
125,423 + GFF3301 0.42 -2.6
125,423 + GFF3301 0.42 -1.8
125,423 + GFF3301 0.42 +4.3
125,423 + GFF3301 0.42 +0.3
125,423 + GFF3301 0.42 +0.3
125,423 + GFF3301 0.42 +0.2
125,423 + GFF3301 0.42 -0.9
125,423 + GFF3301 0.42 +1.5
125,423 + GFF3301 0.42 -0.9
125,423 + GFF3301 0.42 -2.8
125,423 + GFF3301 0.42 -2.5
125,423 + GFF3301 0.42 -3.7
125,423 + GFF3301 0.42 -1.8
125,424 - GFF3301 0.42 -0.5
125,424 - GFF3301 0.42 -2.4
125,424 - GFF3301 0.42 -1.7
125,424 - GFF3301 0.42 -1.5
125,424 - GFF3301 0.42 +0.2
125,424 - GFF3301 0.42 +0.2
125,424 - GFF3301 0.42 +1.2
125,424 - GFF3301 0.42 +1.3
125,424 - GFF3301 0.42 -1.4
125,424 - GFF3301 0.42 +0.4
125,424 - GFF3301 0.42 +0.7
125,424 - GFF3301 0.42 -1.1
125,424 - GFF3301 0.42 -0.1
125,424 - GFF3301 0.42 -0.4
125,498 + GFF3301 0.48 -2.2
125,499 - GFF3301 0.48 +1.9
125,499 - GFF3301 0.48 +0.9
125,621 + GFF3301 0.56 -1.5
125,622 - GFF3301 0.56 -0.1
125,622 - GFF3301 0.56 -2.8

Or see this region's nucleotide sequence