Experiment: Community=arabino-guar; Passage=4
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt GFF3264 and GFF3265 overlap by 4 nucleotides GFF3265 and GFF3266 are separated by 167 nucleotides
GFF3264 - Methionine biosynthesis protein MetW, at 84,629 to 85,219
GFF3264
GFF3265 - Homoserine O-acetyltransferase (EC 2.3.1.31), at 85,216 to 86,340
GFF3265
GFF3266 - Putative transmembrane protein, at 86,508 to 87,071
GFF3266
Position (kb) 85
86
87 Strain fitness (log2 ratio) -4
-3
-2
-1
0
1
2
3 at 84.270 kb on + strand at 84.271 kb on - strand at 84.271 kb on - strand at 84.271 kb on - strand at 84.271 kb on - strand at 84.271 kb on - strand at 84.271 kb on - strand at 84.271 kb on - strand at 84.315 kb on + strand at 84.315 kb on + strand at 84.316 kb on - strand at 84.316 kb on - strand at 84.801 kb on + strand, within GFF3264 at 84.801 kb on + strand, within GFF3264 at 84.801 kb on + strand, within GFF3264 at 84.801 kb on + strand, within GFF3264 at 84.801 kb on + strand, within GFF3264 at 84.802 kb on - strand, within GFF3264 at 84.802 kb on - strand, within GFF3264 at 84.802 kb on - strand, within GFF3264 at 84.802 kb on - strand, within GFF3264 at 84.802 kb on - strand, within GFF3264 at 84.811 kb on - strand, within GFF3264 at 85.271 kb on + strand at 85.486 kb on + strand, within GFF3265 at 85.491 kb on - strand, within GFF3265 at 85.610 kb on + strand, within GFF3265 at 85.691 kb on + strand, within GFF3265 at 85.691 kb on + strand, within GFF3265 at 85.754 kb on + strand, within GFF3265 at 86.028 kb on - strand, within GFF3265 at 86.267 kb on + strand at 86.276 kb on + strand at 86.288 kb on + strand at 86.289 kb on - strand at 86.434 kb on + strand at 86.434 kb on + strand at 86.434 kb on + strand at 86.434 kb on + strand at 86.434 kb on + strand at 86.434 kb on + strand at 86.435 kb on - strand at 86.435 kb on - strand at 86.435 kb on - strand at 86.435 kb on - strand at 86.435 kb on - strand at 86.444 kb on + strand at 86.445 kb on - strand at 86.447 kb on - strand at 86.486 kb on + strand at 86.486 kb on + strand at 86.486 kb on + strand at 86.486 kb on + strand at 86.486 kb on + strand at 86.486 kb on + strand at 86.486 kb on + strand at 86.486 kb on + strand at 86.486 kb on + strand at 86.486 kb on + strand at 86.486 kb on + strand at 86.486 kb on + strand at 86.486 kb on + strand at 86.486 kb on + strand at 86.486 kb on + strand at 86.486 kb on + strand at 86.486 kb on + strand at 86.486 kb on + strand at 86.487 kb on - strand at 86.487 kb on - strand at 86.487 kb on - strand at 86.487 kb on - strand at 86.487 kb on - strand at 86.487 kb on - strand at 86.487 kb on - strand at 86.487 kb on - strand at 86.487 kb on - strand at 86.487 kb on - strand at 86.487 kb on - strand at 86.487 kb on - strand at 86.487 kb on - strand at 86.487 kb on - strand at 86.487 kb on - strand at 86.488 kb on + strand at 86.488 kb on + strand at 86.488 kb on + strand at 86.488 kb on + strand at 86.488 kb on + strand at 86.488 kb on + strand at 86.489 kb on - strand at 86.489 kb on - strand at 86.489 kb on - strand at 86.489 kb on - strand at 86.489 kb on - strand at 86.489 kb on - strand at 86.489 kb on - strand at 86.489 kb on - strand at 86.489 kb on - strand at 86.510 kb on - strand at 86.671 kb on + strand, within GFF3266 at 86.671 kb on + strand, within GFF3266 at 86.671 kb on + strand, within GFF3266 at 86.671 kb on + strand, within GFF3266 at 86.671 kb on + strand, within GFF3266 at 86.672 kb on - strand, within GFF3266 at 86.672 kb on - strand, within GFF3266 at 86.672 kb on - strand, within GFF3266 at 86.672 kb on - strand, within GFF3266 at 86.672 kb on - strand, within GFF3266 at 86.672 kb on - strand, within GFF3266 at 86.672 kb on - strand, within GFF3266 at 86.672 kb on - strand, within GFF3266 at 86.672 kb on - strand, within GFF3266 at 86.672 kb on - strand, within GFF3266 at 86.672 kb on - strand, within GFF3266 at 86.672 kb on - strand, within GFF3266 at 86.672 kb on - strand, within GFF3266 at 86.672 kb on - strand, within GFF3266 at 86.672 kb on - strand, within GFF3266 at 86.672 kb on - strand, within GFF3266 at 86.751 kb on + strand, within GFF3266 at 86.751 kb on + strand, within GFF3266 at 86.752 kb on - strand, within GFF3266 at 86.752 kb on - strand, within GFF3266 at 86.899 kb on + strand, within GFF3266 at 86.899 kb on + strand, within GFF3266 at 86.899 kb on + strand, within GFF3266 at 86.899 kb on + strand, within GFF3266 at 86.899 kb on + strand, within GFF3266 at 86.899 kb on + strand, within GFF3266 at 86.899 kb on + strand, within GFF3266 at 86.899 kb on + strand, within GFF3266 at 86.899 kb on + strand, within GFF3266 at 86.899 kb on + strand, within GFF3266 at 86.899 kb on + strand, within GFF3266 at 86.899 kb on + strand, within GFF3266 at 86.899 kb on + strand, within GFF3266 at 86.899 kb on + strand, within GFF3266 at 86.899 kb on + strand, within GFF3266 at 86.899 kb on + strand, within GFF3266 at 86.900 kb on - strand, within GFF3266 at 86.900 kb on - strand, within GFF3266 at 86.900 kb on - strand, within GFF3266 at 86.900 kb on - strand, within GFF3266 at 86.900 kb on - strand, within GFF3266 at 86.900 kb on - strand, within GFF3266 at 86.900 kb on - strand, within GFF3266 at 86.900 kb on - strand, within GFF3266 at 86.900 kb on - strand, within GFF3266 at 86.900 kb on - strand, within GFF3266 at 86.900 kb on - strand, within GFF3266 at 86.900 kb on - strand, within GFF3266 at 86.900 kb on - strand, within GFF3266 at 86.900 kb on - strand, within GFF3266 at 86.900 kb on - strand, within GFF3266 at 86.900 kb on - strand, within GFF3266 at 87.042 kb on + strand at 87.042 kb on + strand at 87.042 kb on + strand at 87.042 kb on + strand at 87.042 kb on + strand at 87.042 kb on + strand at 87.042 kb on + strand at 87.042 kb on + strand at 87.043 kb on - strand at 87.043 kb on - strand at 87.043 kb on - strand at 87.043 kb on - strand at 87.043 kb on - strand at 87.043 kb on - strand at 87.043 kb on - strand at 87.132 kb on + strand at 87.133 kb on - strand at 87.250 kb on + strand at 87.250 kb on + strand at 87.250 kb on + strand at 87.275 kb on + strand at 87.275 kb on + strand at 87.275 kb on + strand at 87.275 kb on + strand at 87.275 kb on + strand at 87.276 kb on - strand at 87.276 kb on - strand at 87.276 kb on - strand at 87.276 kb on - strand at 87.276 kb on - strand at 87.276 kb on - strand at 87.276 kb on - strand at 87.276 kb on - strand at 87.276 kb on - strand at 87.276 kb on - strand at 87.276 kb on - strand at 87.281 kb on + strand at 87.282 kb on - strand at 87.282 kb on - strand at 87.282 kb on - strand at 87.320 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction Community=arabino-guar; Passage=4 remove 84,270 + -2.1 84,271 - -0.1 84,271 - -1.1 84,271 - -0.3 84,271 - -3.1 84,271 - -0.0 84,271 - -3.2 84,271 - -1.9 84,315 + +0.5 84,315 + -2.2 84,316 - -1.2 84,316 - -0.7 84,801 + GFF3264 0.29 +0.3 84,801 + GFF3264 0.29 -1.2 84,801 + GFF3264 0.29 -0.5 84,801 + GFF3264 0.29 -3.3 84,801 + GFF3264 0.29 +2.3 84,802 - GFF3264 0.29 -2.4 84,802 - GFF3264 0.29 -3.7 84,802 - GFF3264 0.29 -3.7 84,802 - GFF3264 0.29 -2.1 84,802 - GFF3264 0.29 -4.4 84,811 - GFF3264 0.31 -2.7 85,271 + +1.3 85,486 + GFF3265 0.24 -0.9 85,491 - GFF3265 0.24 -1.7 85,610 + GFF3265 0.35 -1.2 85,691 + GFF3265 0.42 -1.2 85,691 + GFF3265 0.42 +1.3 85,754 + GFF3265 0.48 -0.7 86,028 - GFF3265 0.72 -0.3 86,267 + -0.3 86,276 + -1.7 86,288 + -0.7 86,289 - -0.1 86,434 + -3.2 86,434 + -2.7 86,434 + -2.5 86,434 + -3.4 86,434 + -2.4 86,434 + +1.6 86,435 - -0.2 86,435 - -0.1 86,435 - -0.1 86,435 - +1.0 86,435 - +2.9 86,444 + -0.7 86,445 - -1.9 86,447 - -0.8 86,486 + -3.5 86,486 + -1.4 86,486 + -2.7 86,486 + -0.9 86,486 + -4.3 86,486 + -0.9 86,486 + -0.9 86,486 + -2.3 86,486 + -2.3 86,486 + -0.3 86,486 + -0.7 86,486 + -0.1 86,486 + -0.7 86,486 + -0.5 86,486 + -2.9 86,486 + +1.3 86,486 + -4.5 86,486 + -1.1 86,487 - -1.5 86,487 - -4.1 86,487 - +0.4 86,487 - +1.0 86,487 - -1.1 86,487 - +0.8 86,487 - -1.5 86,487 - -2.3 86,487 - -1.5 86,487 - -0.4 86,487 - -1.9 86,487 - -1.2 86,487 - +1.4 86,487 - -3.8 86,487 - -0.6 86,488 + -0.2 86,488 + +1.3 86,488 + +0.8 86,488 + -4.0 86,488 + -1.0 86,488 + +2.3 86,489 - +1.1 86,489 - +2.4 86,489 - -1.0 86,489 - -2.0 86,489 - -1.3 86,489 - -3.3 86,489 - +0.3 86,489 - -0.0 86,489 - -2.3 86,510 - +1.4 86,671 + GFF3266 0.29 -3.2 86,671 + GFF3266 0.29 -1.9 86,671 + GFF3266 0.29 -1.5 86,671 + GFF3266 0.29 -0.4 86,671 + GFF3266 0.29 -0.2 86,672 - GFF3266 0.29 -3.2 86,672 - GFF3266 0.29 +2.6 86,672 - GFF3266 0.29 +0.3 86,672 - GFF3266 0.29 -2.5 86,672 - GFF3266 0.29 -2.1 86,672 - GFF3266 0.29 +0.0 86,672 - GFF3266 0.29 -1.2 86,672 - GFF3266 0.29 +0.2 86,672 - GFF3266 0.29 -0.5 86,672 - GFF3266 0.29 -1.9 86,672 - GFF3266 0.29 +0.3 86,672 - GFF3266 0.29 -2.5 86,672 - GFF3266 0.29 -4.7 86,672 - GFF3266 0.29 +0.7 86,672 - GFF3266 0.29 -3.4 86,672 - GFF3266 0.29 -1.9 86,751 + GFF3266 0.43 -0.9 86,751 + GFF3266 0.43 -0.3 86,752 - GFF3266 0.43 -0.6 86,752 - GFF3266 0.43 -1.9 86,899 + GFF3266 0.69 -0.1 86,899 + GFF3266 0.69 -0.4 86,899 + GFF3266 0.69 -0.1 86,899 + GFF3266 0.69 +0.0 86,899 + GFF3266 0.69 -1.4 86,899 + GFF3266 0.69 +2.4 86,899 + GFF3266 0.69 -2.0 86,899 + GFF3266 0.69 -0.0 86,899 + GFF3266 0.69 -2.1 86,899 + GFF3266 0.69 +0.0 86,899 + GFF3266 0.69 -0.5 86,899 + GFF3266 0.69 -0.5 86,899 + GFF3266 0.69 -1.1 86,899 + GFF3266 0.69 -1.4 86,899 + GFF3266 0.69 -1.7 86,899 + GFF3266 0.69 +0.4 86,900 - GFF3266 0.70 -0.5 86,900 - GFF3266 0.70 -2.7 86,900 - GFF3266 0.70 +0.4 86,900 - GFF3266 0.70 -1.3 86,900 - GFF3266 0.70 -1.9 86,900 - GFF3266 0.70 +0.0 86,900 - GFF3266 0.70 +0.1 86,900 - GFF3266 0.70 -0.5 86,900 - GFF3266 0.70 -2.6 86,900 - GFF3266 0.70 +1.2 86,900 - GFF3266 0.70 -1.8 86,900 - GFF3266 0.70 -1.8 86,900 - GFF3266 0.70 +0.7 86,900 - GFF3266 0.70 -3.5 86,900 - GFF3266 0.70 -0.6 86,900 - GFF3266 0.70 -0.1 87,042 + -0.5 87,042 + +1.9 87,042 + -0.7 87,042 + -1.1 87,042 + +0.5 87,042 + +0.8 87,042 + -1.1 87,042 + -1.8 87,043 - -1.6 87,043 - +0.2 87,043 - -0.7 87,043 - +0.9 87,043 - +0.4 87,043 - +0.1 87,043 - -3.6 87,132 + +0.1 87,133 - -0.4 87,250 + -1.1 87,250 + +2.3 87,250 + +0.6 87,275 + -1.8 87,275 + -1.6 87,275 + -2.0 87,275 + +0.5 87,275 + +0.4 87,276 - +2.3 87,276 - -2.3 87,276 - -3.8 87,276 - -3.2 87,276 - -2.5 87,276 - -1.9 87,276 - +0.3 87,276 - -0.3 87,276 - -0.7 87,276 - +1.3 87,276 - -1.0 87,281 + -1.0 87,282 - +1.8 87,282 - -0.3 87,282 - -4.1 87,320 - +2.5
Or see this region's nucleotide sequence