Strain Fitness in Variovorax sp. SCN45 around GFF3249

Experiment: Community=arabino-guar; Passage=4

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntGFF3248 and GFF3249 are separated by 181 nucleotidesGFF3249 and GFF3250 overlap by 4 nucleotidesGFF3250 and GFF3251 are separated by 296 nucleotides GFF3248 - NADP-dependent malic enzyme (EC 1.1.1.40), at 63,622 to 65,970 GFF3248 GFF3249 - Guanyl-specific ribonuclease (EC 3.1.27.3), at 66,152 to 66,565 GFF3249 GFF3250 - Barstar, ribonuclease (Barnase) inhibitor, at 66,562 to 67,041 GFF3250 GFF3251 - SSU rRNA (adenine(1518)-N(6)/adenine(1519)-N(6))-dimethyltransferase (EC 2.1.1.182), at 67,338 to 68,105 GFF3251 Position (kb) 66 67Strain fitness (log2 ratio) -4 -3 -2 -1 0 1 2 3 4at 65.155 kb on + strand, within GFF3248at 65.155 kb on + strand, within GFF3248at 65.155 kb on + strand, within GFF3248at 65.155 kb on + strand, within GFF3248at 65.155 kb on + strand, within GFF3248at 65.155 kb on + strand, within GFF3248at 65.155 kb on + strand, within GFF3248at 65.155 kb on + strand, within GFF3248at 65.156 kb on - strand, within GFF3248at 65.156 kb on - strand, within GFF3248at 65.156 kb on - strand, within GFF3248at 65.156 kb on - strand, within GFF3248at 65.156 kb on - strand, within GFF3248at 65.156 kb on - strand, within GFF3248at 65.156 kb on - strand, within GFF3248at 65.209 kb on + strand, within GFF3248at 65.209 kb on + strand, within GFF3248at 65.209 kb on + strand, within GFF3248at 65.209 kb on + strand, within GFF3248at 65.209 kb on + strand, within GFF3248at 65.209 kb on + strand, within GFF3248at 65.209 kb on + strand, within GFF3248at 65.209 kb on + strand, within GFF3248at 65.209 kb on + strand, within GFF3248at 65.209 kb on + strand, within GFF3248at 65.209 kb on + strand, within GFF3248at 65.209 kb on + strand, within GFF3248at 65.209 kb on + strand, within GFF3248at 65.210 kb on - strand, within GFF3248at 65.210 kb on - strand, within GFF3248at 65.210 kb on - strand, within GFF3248at 65.210 kb on - strand, within GFF3248at 65.210 kb on - strand, within GFF3248at 65.210 kb on - strand, within GFF3248at 65.210 kb on - strand, within GFF3248at 65.210 kb on - strand, within GFF3248at 65.210 kb on - strand, within GFF3248at 65.210 kb on - strand, within GFF3248at 65.210 kb on - strand, within GFF3248at 65.210 kb on - strand, within GFF3248at 65.210 kb on - strand, within GFF3248at 65.365 kb on + strand, within GFF3248at 65.365 kb on + strand, within GFF3248at 65.365 kb on + strand, within GFF3248at 65.365 kb on + strand, within GFF3248at 65.365 kb on + strand, within GFF3248at 65.365 kb on + strand, within GFF3248at 65.365 kb on + strand, within GFF3248at 65.365 kb on + strand, within GFF3248at 65.365 kb on + strand, within GFF3248at 65.365 kb on + strand, within GFF3248at 65.365 kb on + strand, within GFF3248at 65.365 kb on + strand, within GFF3248at 65.365 kb on + strand, within GFF3248at 65.365 kb on + strand, within GFF3248at 65.365 kb on + strand, within GFF3248at 65.366 kb on - strand, within GFF3248at 65.366 kb on - strand, within GFF3248at 65.366 kb on - strand, within GFF3248at 65.366 kb on - strand, within GFF3248at 65.366 kb on - strand, within GFF3248at 65.366 kb on - strand, within GFF3248at 65.366 kb on - strand, within GFF3248at 65.366 kb on - strand, within GFF3248at 65.366 kb on - strand, within GFF3248at 65.366 kb on - strand, within GFF3248at 65.366 kb on - strand, within GFF3248at 65.366 kb on - strand, within GFF3248at 65.366 kb on - strand, within GFF3248at 65.366 kb on - strand, within GFF3248at 65.366 kb on - strand, within GFF3248at 65.366 kb on - strand, within GFF3248at 65.366 kb on - strand, within GFF3248at 65.431 kb on + strand, within GFF3248at 65.431 kb on + strand, within GFF3248at 65.431 kb on + strand, within GFF3248at 65.431 kb on + strand, within GFF3248at 65.431 kb on + strand, within GFF3248at 65.431 kb on + strand, within GFF3248at 65.432 kb on - strand, within GFF3248at 65.432 kb on - strand, within GFF3248at 65.432 kb on - strand, within GFF3248at 65.432 kb on - strand, within GFF3248at 65.432 kb on - strand, within GFF3248at 65.432 kb on - strand, within GFF3248at 65.432 kb on - strand, within GFF3248at 65.432 kb on - strand, within GFF3248at 65.432 kb on - strand, within GFF3248at 65.432 kb on - strand, within GFF3248at 65.432 kb on - strand, within GFF3248at 65.497 kb on + strand, within GFF3248at 65.497 kb on + strand, within GFF3248at 65.497 kb on + strand, within GFF3248at 65.497 kb on + strand, within GFF3248at 65.497 kb on + strand, within GFF3248at 65.497 kb on + strand, within GFF3248at 65.497 kb on + strand, within GFF3248at 65.497 kb on + strand, within GFF3248at 65.497 kb on + strand, within GFF3248at 65.497 kb on + strand, within GFF3248at 65.497 kb on + strand, within GFF3248at 65.497 kb on + strand, within GFF3248at 65.497 kb on + strand, within GFF3248at 65.498 kb on - strand, within GFF3248at 65.498 kb on - strand, within GFF3248at 65.498 kb on - strand, within GFF3248at 65.498 kb on - strand, within GFF3248at 65.498 kb on - strand, within GFF3248at 65.498 kb on - strand, within GFF3248at 65.498 kb on - strand, within GFF3248at 65.498 kb on - strand, within GFF3248at 65.498 kb on - strand, within GFF3248at 65.498 kb on - strand, within GFF3248at 65.498 kb on - strand, within GFF3248at 65.498 kb on - strand, within GFF3248at 65.805 kb on + strandat 65.805 kb on + strandat 65.805 kb on + strandat 65.805 kb on + strandat 65.806 kb on - strandat 65.806 kb on - strandat 65.812 kb on + strandat 65.813 kb on - strandat 65.968 kb on + strandat 65.968 kb on + strandat 65.968 kb on + strandat 65.968 kb on + strandat 65.969 kb on - strandat 65.969 kb on - strandat 65.969 kb on - strandat 65.969 kb on - strandat 65.973 kb on + strandat 65.973 kb on + strandat 65.973 kb on + strandat 65.973 kb on + strandat 65.973 kb on + strandat 65.974 kb on - strandat 65.974 kb on - strandat 65.974 kb on - strandat 65.998 kb on + strandat 65.998 kb on + strandat 65.999 kb on - strandat 65.999 kb on - strandat 66.051 kb on + strandat 66.051 kb on + strandat 66.161 kb on + strandat 66.161 kb on + strandat 66.161 kb on + strandat 66.161 kb on + strandat 66.162 kb on - strandat 66.162 kb on - strandat 66.323 kb on + strand, within GFF3249at 66.323 kb on + strand, within GFF3249at 66.323 kb on + strand, within GFF3249at 66.323 kb on + strand, within GFF3249at 66.323 kb on + strand, within GFF3249at 66.323 kb on + strand, within GFF3249at 66.323 kb on + strand, within GFF3249at 66.323 kb on + strand, within GFF3249at 66.323 kb on + strand, within GFF3249at 66.323 kb on + strand, within GFF3249at 66.323 kb on + strand, within GFF3249at 66.323 kb on + strand, within GFF3249at 66.323 kb on + strand, within GFF3249at 66.323 kb on + strand, within GFF3249at 66.323 kb on + strand, within GFF3249at 66.323 kb on + strand, within GFF3249at 66.323 kb on + strand, within GFF3249at 66.323 kb on + strand, within GFF3249at 66.323 kb on + strand, within GFF3249at 66.323 kb on + strand, within GFF3249at 66.323 kb on + strand, within GFF3249at 66.324 kb on - strand, within GFF3249at 66.324 kb on - strand, within GFF3249at 66.324 kb on - strand, within GFF3249at 66.324 kb on - strand, within GFF3249at 66.324 kb on - strand, within GFF3249at 66.324 kb on - strand, within GFF3249at 66.324 kb on - strand, within GFF3249at 66.356 kb on + strand, within GFF3249at 66.356 kb on + strand, within GFF3249at 66.356 kb on + strand, within GFF3249at 66.357 kb on - strand, within GFF3249at 66.375 kb on + strand, within GFF3249at 66.375 kb on + strand, within GFF3249at 66.375 kb on + strand, within GFF3249at 66.375 kb on + strand, within GFF3249at 66.375 kb on + strand, within GFF3249at 66.375 kb on + strand, within GFF3249at 66.375 kb on + strand, within GFF3249at 66.375 kb on + strand, within GFF3249at 66.375 kb on + strand, within GFF3249at 66.375 kb on + strand, within GFF3249at 66.375 kb on + strand, within GFF3249at 66.375 kb on + strand, within GFF3249at 66.376 kb on - strand, within GFF3249at 66.376 kb on - strand, within GFF3249at 66.376 kb on - strand, within GFF3249at 66.376 kb on - strand, within GFF3249at 66.376 kb on - strand, within GFF3249at 66.376 kb on - strand, within GFF3249at 66.376 kb on - strand, within GFF3249at 66.376 kb on - strand, within GFF3249at 66.376 kb on - strand, within GFF3249at 66.376 kb on - strand, within GFF3249at 66.376 kb on - strand, within GFF3249at 66.376 kb on - strand, within GFF3249at 66.376 kb on - strand, within GFF3249at 66.376 kb on - strand, within GFF3249at 66.422 kb on + strand, within GFF3249at 66.422 kb on + strand, within GFF3249at 66.431 kb on + strand, within GFF3249at 66.431 kb on + strand, within GFF3249at 66.431 kb on + strand, within GFF3249at 66.431 kb on + strand, within GFF3249at 66.432 kb on - strand, within GFF3249at 66.432 kb on - strand, within GFF3249at 66.521 kb on + strand, within GFF3249at 66.522 kb on - strand, within GFF3249at 66.522 kb on - strand, within GFF3249at 66.522 kb on - strand, within GFF3249at 66.536 kb on + strandat 66.536 kb on + strandat 66.536 kb on + strandat 66.536 kb on + strandat 66.536 kb on + strandat 66.536 kb on + strandat 66.536 kb on + strandat 66.536 kb on + strandat 66.537 kb on - strandat 66.537 kb on - strandat 66.537 kb on - strandat 66.537 kb on - strandat 66.537 kb on - strandat 66.537 kb on - strandat 66.537 kb on - strandat 66.621 kb on + strand, within GFF3250at 66.648 kb on - strand, within GFF3250at 66.648 kb on - strand, within GFF3250at 67.039 kb on + strandat 67.055 kb on + strandat 67.055 kb on + strandat 67.055 kb on + strandat 67.055 kb on + strandat 67.055 kb on + strandat 67.055 kb on + strandat 67.055 kb on + strandat 67.056 kb on - strandat 67.056 kb on - strandat 67.056 kb on - strandat 67.056 kb on - strandat 67.056 kb on - strandat 67.056 kb on - strandat 67.056 kb on - strandat 67.056 kb on - strandat 67.056 kb on - strandat 67.056 kb on - strandat 67.056 kb on - strandat 67.056 kb on - strandat 67.056 kb on - strandat 67.248 kb on + strandat 67.266 kb on + strandat 67.295 kb on + strandat 67.295 kb on + strandat 67.295 kb on + strandat 67.296 kb on - strandat 67.296 kb on - strandat 67.372 kb on + strandat 67.372 kb on + strandat 67.372 kb on + strandat 67.372 kb on + strandat 67.372 kb on + strandat 67.372 kb on + strandat 67.373 kb on - strandat 67.373 kb on - strandat 67.373 kb on - strandat 67.373 kb on - strandat 67.373 kb on - strandat 67.373 kb on - strandat 67.373 kb on - strandat 67.373 kb on - strandat 67.373 kb on - strandat 67.373 kb on - strandat 67.440 kb on + strand, within GFF3251at 67.441 kb on - strand, within GFF3251at 67.441 kb on - strand, within GFF3251at 67.441 kb on - strand, within GFF3251

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Per-strain Table

Position Strand Gene LocusTag Fraction Community=arabino-guar; Passage=4
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65,155 + GFF3248 0.65 -2.1
65,155 + GFF3248 0.65 -0.3
65,155 + GFF3248 0.65 +0.3
65,155 + GFF3248 0.65 -1.2
65,155 + GFF3248 0.65 -1.3
65,155 + GFF3248 0.65 -1.5
65,155 + GFF3248 0.65 +1.1
65,155 + GFF3248 0.65 +1.2
65,156 - GFF3248 0.65 -0.7
65,156 - GFF3248 0.65 +1.8
65,156 - GFF3248 0.65 +2.3
65,156 - GFF3248 0.65 -0.1
65,156 - GFF3248 0.65 -1.1
65,156 - GFF3248 0.65 +0.1
65,156 - GFF3248 0.65 -0.1
65,209 + GFF3248 0.68 +0.5
65,209 + GFF3248 0.68 -1.2
65,209 + GFF3248 0.68 +3.6
65,209 + GFF3248 0.68 -2.1
65,209 + GFF3248 0.68 +0.0
65,209 + GFF3248 0.68 -1.3
65,209 + GFF3248 0.68 -0.3
65,209 + GFF3248 0.68 +0.6
65,209 + GFF3248 0.68 +0.1
65,209 + GFF3248 0.68 -3.1
65,209 + GFF3248 0.68 -2.3
65,209 + GFF3248 0.68 -0.5
65,209 + GFF3248 0.68 +0.1
65,210 - GFF3248 0.68 -1.8
65,210 - GFF3248 0.68 -3.3
65,210 - GFF3248 0.68 -3.8
65,210 - GFF3248 0.68 -0.5
65,210 - GFF3248 0.68 +1.3
65,210 - GFF3248 0.68 +3.9
65,210 - GFF3248 0.68 +0.7
65,210 - GFF3248 0.68 -2.3
65,210 - GFF3248 0.68 -2.2
65,210 - GFF3248 0.68 -3.6
65,210 - GFF3248 0.68 -1.8
65,210 - GFF3248 0.68 +0.8
65,210 - GFF3248 0.68 -1.1
65,365 + GFF3248 0.74 -1.0
65,365 + GFF3248 0.74 +0.0
65,365 + GFF3248 0.74 +2.3
65,365 + GFF3248 0.74 +0.4
65,365 + GFF3248 0.74 +0.9
65,365 + GFF3248 0.74 +2.6
65,365 + GFF3248 0.74 +1.4
65,365 + GFF3248 0.74 -1.1
65,365 + GFF3248 0.74 +1.6
65,365 + GFF3248 0.74 -2.1
65,365 + GFF3248 0.74 +2.2
65,365 + GFF3248 0.74 -1.1
65,365 + GFF3248 0.74 -1.5
65,365 + GFF3248 0.74 -1.8
65,365 + GFF3248 0.74 -2.0
65,366 - GFF3248 0.74 -2.3
65,366 - GFF3248 0.74 +1.5
65,366 - GFF3248 0.74 -1.4
65,366 - GFF3248 0.74 +1.3
65,366 - GFF3248 0.74 -1.0
65,366 - GFF3248 0.74 -0.3
65,366 - GFF3248 0.74 -2.0
65,366 - GFF3248 0.74 +0.7
65,366 - GFF3248 0.74 -0.9
65,366 - GFF3248 0.74 -0.1
65,366 - GFF3248 0.74 -3.2
65,366 - GFF3248 0.74 -0.1
65,366 - GFF3248 0.74 +0.4
65,366 - GFF3248 0.74 -0.3
65,366 - GFF3248 0.74 -1.1
65,366 - GFF3248 0.74 -2.3
65,366 - GFF3248 0.74 +0.4
65,431 + GFF3248 0.77 +0.5
65,431 + GFF3248 0.77 -1.2
65,431 + GFF3248 0.77 -4.1
65,431 + GFF3248 0.77 -1.7
65,431 + GFF3248 0.77 -2.1
65,431 + GFF3248 0.77 -1.5
65,432 - GFF3248 0.77 -0.9
65,432 - GFF3248 0.77 +0.4
65,432 - GFF3248 0.77 -2.2
65,432 - GFF3248 0.77 -1.5
65,432 - GFF3248 0.77 -2.7
65,432 - GFF3248 0.77 +1.3
65,432 - GFF3248 0.77 +1.2
65,432 - GFF3248 0.77 -0.6
65,432 - GFF3248 0.77 -1.1
65,432 - GFF3248 0.77 -0.1
65,432 - GFF3248 0.77 -1.1
65,497 + GFF3248 0.80 +1.7
65,497 + GFF3248 0.80 -2.5
65,497 + GFF3248 0.80 -2.5
65,497 + GFF3248 0.80 -0.9
65,497 + GFF3248 0.80 -2.2
65,497 + GFF3248 0.80 +2.9
65,497 + GFF3248 0.80 +0.3
65,497 + GFF3248 0.80 +0.7
65,497 + GFF3248 0.80 -1.1
65,497 + GFF3248 0.80 -1.2
65,497 + GFF3248 0.80 -0.5
65,497 + GFF3248 0.80 -0.5
65,497 + GFF3248 0.80 -0.6
65,498 - GFF3248 0.80 -0.5
65,498 - GFF3248 0.80 +0.3
65,498 - GFF3248 0.80 +0.2
65,498 - GFF3248 0.80 +0.3
65,498 - GFF3248 0.80 -3.1
65,498 - GFF3248 0.80 +0.6
65,498 - GFF3248 0.80 -0.3
65,498 - GFF3248 0.80 -2.5
65,498 - GFF3248 0.80 -2.8
65,498 - GFF3248 0.80 -2.1
65,498 - GFF3248 0.80 +1.1
65,498 - GFF3248 0.80 -0.7
65,805 + +1.2
65,805 + -2.1
65,805 + -0.5
65,805 + +1.3
65,806 - -2.4
65,806 - -0.9
65,812 + +0.8
65,813 - -0.9
65,968 + +0.1
65,968 + -0.9
65,968 + -1.6
65,968 + +0.2
65,969 - -0.5
65,969 - -0.0
65,969 - -2.3
65,969 - +2.6
65,973 + -0.5
65,973 + -1.7
65,973 + -3.9
65,973 + -0.5
65,973 + -0.7
65,974 - -0.8
65,974 - -0.5
65,974 - -0.8
65,998 + +0.0
65,998 + +0.6
65,999 - +1.3
65,999 - -1.3
66,051 + +0.7
66,051 + -0.9
66,161 + +1.7
66,161 + -0.9
66,161 + +0.8
66,161 + -0.5
66,162 - +2.3
66,162 - +2.3
66,323 + GFF3249 0.41 -0.9
66,323 + GFF3249 0.41 -2.1
66,323 + GFF3249 0.41 -0.3
66,323 + GFF3249 0.41 -3.7
66,323 + GFF3249 0.41 -0.8
66,323 + GFF3249 0.41 -2.4
66,323 + GFF3249 0.41 -1.9
66,323 + GFF3249 0.41 -0.9
66,323 + GFF3249 0.41 -1.2
66,323 + GFF3249 0.41 +0.2
66,323 + GFF3249 0.41 -0.3
66,323 + GFF3249 0.41 -0.3
66,323 + GFF3249 0.41 +0.2
66,323 + GFF3249 0.41 -0.3
66,323 + GFF3249 0.41 -2.7
66,323 + GFF3249 0.41 -2.3
66,323 + GFF3249 0.41 -1.6
66,323 + GFF3249 0.41 -2.9
66,323 + GFF3249 0.41 -0.3
66,323 + GFF3249 0.41 +1.3
66,323 + GFF3249 0.41 +0.5
66,324 - GFF3249 0.42 +1.3
66,324 - GFF3249 0.42 +0.3
66,324 - GFF3249 0.42 +0.7
66,324 - GFF3249 0.42 -0.9
66,324 - GFF3249 0.42 +2.3
66,324 - GFF3249 0.42 -0.1
66,324 - GFF3249 0.42 +1.3
66,356 + GFF3249 0.49 -1.2
66,356 + GFF3249 0.49 +0.5
66,356 + GFF3249 0.49 +0.7
66,357 - GFF3249 0.50 +2.3
66,375 + GFF3249 0.54 +1.4
66,375 + GFF3249 0.54 +0.8
66,375 + GFF3249 0.54 +1.2
66,375 + GFF3249 0.54 -4.2
66,375 + GFF3249 0.54 -1.9
66,375 + GFF3249 0.54 +0.5
66,375 + GFF3249 0.54 +1.7
66,375 + GFF3249 0.54 -1.1
66,375 + GFF3249 0.54 +0.7
66,375 + GFF3249 0.54 +1.9
66,375 + GFF3249 0.54 +1.9
66,375 + GFF3249 0.54 -2.9
66,376 - GFF3249 0.54 -1.4
66,376 - GFF3249 0.54 -2.8
66,376 - GFF3249 0.54 -0.7
66,376 - GFF3249 0.54 +2.3
66,376 - GFF3249 0.54 -1.4
66,376 - GFF3249 0.54 -0.3
66,376 - GFF3249 0.54 -0.1
66,376 - GFF3249 0.54 -2.4
66,376 - GFF3249 0.54 -1.6
66,376 - GFF3249 0.54 -0.7
66,376 - GFF3249 0.54 +2.3
66,376 - GFF3249 0.54 -1.2
66,376 - GFF3249 0.54 -0.9
66,376 - GFF3249 0.54 -2.4
66,422 + GFF3249 0.65 +0.3
66,422 + GFF3249 0.65 -0.7
66,431 + GFF3249 0.67 -0.4
66,431 + GFF3249 0.67 -1.2
66,431 + GFF3249 0.67 +0.1
66,431 + GFF3249 0.67 -0.3
66,432 - GFF3249 0.68 +0.7
66,432 - GFF3249 0.68 +0.7
66,521 + GFF3249 0.89 +0.4
66,522 - GFF3249 0.89 +1.3
66,522 - GFF3249 0.89 -0.3
66,522 - GFF3249 0.89 -1.6
66,536 + -1.0
66,536 + +1.1
66,536 + +0.7
66,536 + +0.3
66,536 + -1.9
66,536 + -0.4
66,536 + +2.1
66,536 + -2.0
66,537 - +2.3
66,537 - +1.3
66,537 - +2.3
66,537 - +0.3
66,537 - +1.3
66,537 - -0.1
66,537 - -0.1
66,621 + GFF3250 0.12 -2.4
66,648 - GFF3250 0.18 -1.5
66,648 - GFF3250 0.18 +1.3
67,039 + -4.0
67,055 + -1.2
67,055 + -0.9
67,055 + -2.0
67,055 + +0.3
67,055 + +1.0
67,055 + -0.9
67,055 + -1.8
67,056 - -1.4
67,056 - -4.4
67,056 - +2.3
67,056 - -0.3
67,056 - -0.8
67,056 - -1.1
67,056 - +0.9
67,056 - -1.6
67,056 - +0.6
67,056 - +1.6
67,056 - -0.0
67,056 - -1.6
67,056 - -0.9
67,248 + -2.4
67,266 + +1.9
67,295 + -0.5
67,295 + -0.5
67,295 + -0.9
67,296 - -1.6
67,296 - -0.9
67,372 + -0.3
67,372 + -0.7
67,372 + +0.2
67,372 + +0.7
67,372 + +1.3
67,372 + +2.7
67,373 - -2.3
67,373 - -1.2
67,373 - -2.7
67,373 - -2.5
67,373 - -2.0
67,373 - +1.3
67,373 - -1.2
67,373 - -2.9
67,373 - -2.5
67,373 - +0.8
67,440 + GFF3251 0.13 -0.9
67,441 - GFF3251 0.13 +2.1
67,441 - GFF3251 0.13 -0.1
67,441 - GFF3251 0.13 +0.3

Or see this region's nucleotide sequence