Experiment: Community=arabino-guar; Passage=4
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt GFF3203 and GFF3204 are separated by 71 nucleotides GFF3204 and GFF3205 are separated by 135 nucleotides GFF3205 and GFF3206 are separated by 67 nucleotides
GFF3203 - no description, at 22,480 to 23,127
GFF3203
GFF3204 - no description, at 23,199 to 23,477
GFF3204
GFF3205 - no description, at 23,613 to 23,831
GFF3205
GFF3206 - no description, at 23,899 to 24,270
GFF3206
Position (kb) 23
24
25 Strain fitness (log2 ratio) -3
-2
-1
0
1
2
3 at 23.015 kb on + strand, within GFF3203 at 23.081 kb on - strand at 23.110 kb on + strand at 23.111 kb on - strand at 23.126 kb on - strand at 23.126 kb on - strand at 23.126 kb on - strand at 23.182 kb on + strand at 23.183 kb on - strand at 23.255 kb on + strand, within GFF3204 at 23.255 kb on + strand, within GFF3204 at 23.350 kb on + strand, within GFF3204 at 23.350 kb on + strand, within GFF3204 at 23.351 kb on - strand, within GFF3204 at 23.351 kb on - strand, within GFF3204 at 23.640 kb on + strand, within GFF3205 at 23.641 kb on - strand, within GFF3205 at 23.641 kb on - strand, within GFF3205 at 23.719 kb on - strand, within GFF3205 at 23.781 kb on - strand, within GFF3205 at 23.787 kb on + strand, within GFF3205 at 23.883 kb on + strand at 23.883 kb on + strand at 23.884 kb on - strand at 23.884 kb on - strand at 23.888 kb on - strand at 23.888 kb on - strand at 24.119 kb on + strand, within GFF3206 at 24.119 kb on + strand, within GFF3206 at 24.549 kb on + strand at 24.567 kb on - strand at 24.567 kb on - strand at 24.601 kb on - strand at 24.632 kb on - strand at 24.755 kb on + strand at 24.756 kb on - strand at 24.756 kb on - strand at 24.756 kb on - strand at 24.875 kb on + strand at 24.875 kb on + strand at 24.876 kb on - strand at 24.970 kb on + strand at 24.970 kb on + strand at 24.970 kb on + strand at 24.970 kb on + strand at 24.970 kb on + strand at 24.970 kb on + strand at 24.970 kb on + strand at 24.970 kb on + strand at 24.970 kb on + strand at 24.970 kb on + strand at 24.970 kb on + strand at 24.970 kb on + strand at 24.970 kb on + strand at 24.970 kb on + strand at 24.970 kb on + strand at 24.970 kb on + strand at 24.970 kb on + strand at 24.970 kb on + strand at 24.970 kb on + strand at 24.971 kb on - strand at 24.971 kb on - strand at 24.971 kb on - strand at 24.971 kb on - strand at 24.971 kb on - strand at 24.997 kb on + strand at 24.997 kb on + strand at 25.015 kb on - strand at 25.139 kb on + strand at 25.146 kb on + strand at 25.146 kb on + strand at 25.146 kb on + strand at 25.147 kb on - strand at 25.147 kb on - strand at 25.150 kb on + strand at 25.150 kb on + strand at 25.163 kb on - strand at 25.195 kb on + strand at 25.195 kb on + strand at 25.195 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction Community=arabino-guar; Passage=4 remove 23,015 + GFF3203 0.83 +2.7 23,081 - -1.3 23,110 + -2.1 23,111 - -0.7 23,126 - -0.5 23,126 - -0.1 23,126 - +0.4 23,182 + -1.1 23,183 - -0.2 23,255 + GFF3204 0.20 +0.7 23,255 + GFF3204 0.20 +3.3 23,350 + GFF3204 0.54 +1.7 23,350 + GFF3204 0.54 +0.7 23,351 - GFF3204 0.54 +0.9 23,351 - GFF3204 0.54 -0.2 23,640 + GFF3205 0.12 +1.8 23,641 - GFF3205 0.13 -0.7 23,641 - GFF3205 0.13 +1.0 23,719 - GFF3205 0.48 -0.1 23,781 - GFF3205 0.77 -1.1 23,787 + GFF3205 0.79 -0.3 23,883 + +0.6 23,883 + +0.3 23,884 - +0.1 23,884 - +1.0 23,888 - -0.1 23,888 - +2.9 24,119 + GFF3206 0.59 -0.9 24,119 + GFF3206 0.59 -0.6 24,549 + +1.3 24,567 - -1.2 24,567 - -0.5 24,601 - -1.7 24,632 - -1.3 24,755 + +1.1 24,756 - -0.3 24,756 - +0.3 24,756 - -0.1 24,875 + -3.2 24,875 + +2.3 24,876 - +1.4 24,970 + +0.5 24,970 + -2.6 24,970 + -2.9 24,970 + +0.7 24,970 + -3.6 24,970 + +0.2 24,970 + -0.3 24,970 + -1.3 24,970 + -1.4 24,970 + -2.5 24,970 + -1.4 24,970 + -1.4 24,970 + -1.7 24,970 + +0.7 24,970 + -2.9 24,970 + -3.0 24,970 + -1.1 24,970 + -0.9 24,970 + +1.3 24,971 - +1.5 24,971 - +0.2 24,971 - -0.8 24,971 - -3.7 24,971 - -0.3 24,997 + -0.7 24,997 + +2.3 25,015 - +0.5 25,139 + +0.3 25,146 + -2.1 25,146 + +0.9 25,146 + +0.4 25,147 - -0.2 25,147 - -2.3 25,150 + +0.2 25,150 + -0.6 25,163 - +0.1 25,195 + -3.3 25,195 + +1.6 25,195 + -0.9
Or see this region's nucleotide sequence